View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14682_low_20 (Length: 319)
Name: NF14682_low_20
Description: NF14682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14682_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 6 - 311
Target Start/End: Original strand, 39032127 - 39032439
Alignment:
| Q |
6 |
actaaacacttacatattttgtaccttaattccacagtctgctttgaaaagaagaaacatcttattcactttatattgaacactttgccgtcataaaaag |
105 |
Q |
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| T |
39032127 |
actaaacacttacatattttgtaccttaattccacagtccgctttgaaaaggagaaacatcttattcactttatattgaacactttgccgtcataaaaag |
39032226 |
T |
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| Q |
106 |
tcttgctctctttcact----agaaaagtattgttctattggcgaagaaaactaacctagttannnnnnncgtgtaaaataagctaaaatatataattag |
201 |
Q |
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| T |
39032227 |
tcttgctgtctttcactaaaaagaaaagtattgttctatttgcgaagaaaactaacctagttatttttttcgtgtaaaataagctaaaatatataattag |
39032326 |
T |
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| Q |
202 |
---nnnnnnnnnnnngaaggaataattagttcttatttcattatatatcttcctattacactgctctgctctgtgtgattatatttaaataggggtgcgc |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||| |||||||||||||| |
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| T |
39032327 |
tttttttttttttttgaaggaataattagttcttatttcattatatatcttcctattacactgttttgctttgtgtgattatattcaaataggggtgcgc |
39032426 |
T |
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| Q |
299 |
atgagccaactca |
311 |
Q |
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||||||||||||| |
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| T |
39032427 |
atgagccaactca |
39032439 |
T |
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