View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14682_low_21 (Length: 317)
Name: NF14682_low_21
Description: NF14682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14682_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 21 - 301
Target Start/End: Complemental strand, 26920519 - 26920239
Alignment:
| Q |
21 |
tcaatgaaacatgggtttcctccattttcttcatccaagaacaaacagcaacaacaaagttctcagatgagtgatgaagatgaaccaaattttccagctg |
120 |
Q |
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| T |
26920519 |
tcaatgaaacatgggtttcctccattttcttcatccaagaacaaacagcaacaacaaagttctcagatgagtgatgaagatgaaccaaattttccagctg |
26920420 |
T |
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| Q |
121 |
aagaaagctctggtggtgacccaaaaaggaagatttcaccatggcaaagaatgaaatggactgatacaatggtaaggctattgataatggctgtttatta |
220 |
Q |
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| T |
26920419 |
aagaaagctctggtggtgacccaaaaaggaagatttcaccatggcaaagaatgaaatggactgatacaatggtaaggctattgataatggctgtttatta |
26920320 |
T |
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| Q |
221 |
cattggtgatgaagctggttctgaagggactgatccaaataagaaaaagtctagtggtttgttacagaagaagggaaagtg |
301 |
Q |
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| T |
26920319 |
cattggtgatgaagctggttctgaagggactgatccaaataagaaaaagtctagtggtttgttacagaagaagggaaagtg |
26920239 |
T |
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Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 90 - 239
Target Start/End: Original strand, 41824834 - 41824983
Alignment:
| Q |
90 |
agtgatgaagatgaaccaaattttccagctgaagaaagctctggtggtgacccaaaaaggaagatttcaccatggcaaagaatgaaatggactgatacaa |
189 |
Q |
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|||||||||||||||||| |||| ||| || |||| ||||| ||||||||||||||| || ||||||||||| |||||||||||||| ||||||| |
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| T |
41824834 |
agtgatgaagatgaaccatgttttggagcagatgaaacctctgttggtgacccaaaaagaaaaggatcaccatggcatagaatgaaatggacagatacaa |
41824933 |
T |
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| Q |
190 |
tggtaaggctattgataatggctgtttattacattggtgatgaagctggt |
239 |
Q |
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| T |
41824934 |
tggtaagactcttaataatggctgtttattacattggtgatgaagctggt |
41824983 |
T |
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