View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14682_low_30 (Length: 256)
Name: NF14682_low_30
Description: NF14682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14682_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 21818142 - 21818390
Alignment:
| Q |
1 |
ttaagacaagatgctaaccaagaccagattctgatggagtattcacagttgaagaacaaatggaatgaggattcttcatgtttgtaacataaattacaaa |
100 |
Q |
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| T |
21818142 |
ttaagacaagatgctaaccaagatcagattctgatggagtattcacagttgaagaacaaatggaatgaggattcttcatgtttgtaacataaattacaaa |
21818241 |
T |
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| Q |
101 |
tagagggaaagctgcagcctctttgtttcaagttctcatctgttggcactttgttgtgcttcaatctccaaatgaacatggattttgaaggtggtatatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
21818242 |
tagagggaaagctgcagcctctttgtttcaagttctcatctgttggcactttgttgtgcttcaatctccaaatgaacatggattttgaaggtgggatatc |
21818341 |
T |
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| Q |
201 |
tacactccatatcgttttggcccaacgaagctcttgaaattgatgatgt |
249 |
Q |
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| T |
21818342 |
tacactccatatcgttttggcccaatgaagctcttgaaattgatgatgt |
21818390 |
T |
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Back To:
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Target: chr5 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 14369036 - 14368941
Alignment:
| Q |
1 |
ttaagacaagatgctaaccaagaccagattctgatggagtattcacagttgaagaacaaatggaatgaggattcttcatgtttgtaacataaatta |
96 |
Q |
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| T |
14369036 |
ttaagacaagatgctaaccaagaccagattctgatggagtattcacagttgaagaacaaatggaatgaggattcttcatgtttgtaacataaatta |
14368941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 249
Target Start/End: Original strand, 16010582 - 16010698
Alignment:
| Q |
133 |
ttctcatctgttggcactttgttgtgcttcaatctccaaatgaacatggattttgaaggtggtatatctacactccatatcgttttggcccaacgaagct |
232 |
Q |
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| T |
16010582 |
ttctcatctgtaggaattttgttgtacatcaatctccaaacaaatagagattttgagggagggacatcaacactccaaatggttttggcccaatggagat |
16010681 |
T |
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| Q |
233 |
cttgaaattgatgatgt |
249 |
Q |
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| T |
16010682 |
cttgaaactgatgatgt |
16010698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 43581183 - 43581139
Alignment:
| Q |
181 |
gattttgaaggtggtatatctacactccatatcgttttggcccaa |
225 |
Q |
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|||||||||||||| ||||| ||||||||||| || ||||||||| |
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| T |
43581183 |
gattttgaaggtggaatatcaacactccatattgtattggcccaa |
43581139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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