View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14682_low_35 (Length: 246)

Name: NF14682_low_35
Description: NF14682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14682_low_35
NF14682_low_35
[»] chr3 (6 HSPs)
chr3 (77-241)||(35687491-35687653)
chr3 (92-245)||(40796152-40796303)
chr3 (134-245)||(2487717-2487828)
chr3 (132-245)||(1772452-1772565)
chr3 (196-245)||(23330086-23330135)
chr3 (86-165)||(39655282-39655359)
[»] chr2 (13 HSPs)
chr2 (80-245)||(38342522-38342684)
chr2 (93-245)||(3547089-3547239)
chr2 (130-245)||(42576535-42576650)
chr2 (80-223)||(43371498-43371639)
chr2 (80-245)||(4427847-4428010)
chr2 (132-245)||(14331450-14331563)
chr2 (153-245)||(26755676-26755766)
chr2 (132-245)||(30978848-30978963)
chr2 (132-245)||(18485573-18485684)
chr2 (132-245)||(6164526-6164644)
chr2 (157-244)||(24051696-24051781)
chr2 (132-190)||(44057860-44057919)
chr2 (209-245)||(44057797-44057833)
[»] chr4 (23 HSPs)
chr4 (96-245)||(16216673-16216820)
chr4 (132-245)||(568345-568458)
chr4 (68-245)||(30266322-30266497)
chr4 (68-245)||(30285691-30285866)
chr4 (69-245)||(21544507-21544681)
chr4 (86-245)||(18423518-18423675)
chr4 (71-245)||(29527741-29527912)
chr4 (93-245)||(1866566-1866715)
chr4 (68-245)||(10574411-10574592)
chr4 (80-235)||(14605929-14606081)
chr4 (94-245)||(45065177-45065326)
chr4 (66-245)||(31782543-31782718)
chr4 (155-243)||(30672893-30672981)
chr4 (153-245)||(41915060-41915152)
chr4 (87-245)||(31415942-31416097)
chr4 (140-245)||(11172897-11173002)
chr4 (132-245)||(24637122-24637233)
chr4 (80-245)||(47103661-47103829)
chr4 (83-245)||(15733533-15733685)
chr4 (132-206)||(15132185-15132259)
chr4 (77-165)||(26564839-26564925)
chr4 (86-165)||(6382282-6382359)
chr4 (71-166)||(12825456-12825549)
[»] scaffold0013 (2 HSPs)
scaffold0013 (77-244)||(128121-128286)
scaffold0013 (87-244)||(105479-105634)
[»] chr7 (19 HSPs)
chr7 (80-245)||(31425935-31426098)
chr7 (86-245)||(18683901-18684058)
chr7 (93-240)||(32546124-32546269)
chr7 (77-245)||(29014952-29015124)
chr7 (87-245)||(29157276-29157434)
chr7 (153-245)||(42908104-42908196)
chr7 (95-245)||(28309420-28309567)
chr7 (77-245)||(30839134-30839300)
chr7 (77-245)||(27063067-27063231)
chr7 (68-245)||(21750713-21750884)
chr7 (132-245)||(37103180-37103293)
chr7 (132-245)||(43218210-43218323)
chr7 (153-245)||(2471922-2472014)
chr7 (80-223)||(44845138-44845278)
chr7 (80-218)||(22973342-22973478)
chr7 (190-245)||(27062375-27062430)
chr7 (86-183)||(27063323-27063418)
chr7 (77-125)||(2472028-2472076)
chr7 (86-163)||(25979926-25980001)
[»] chr1 (13 HSPs)
chr1 (77-225)||(35069889-35070035)
chr1 (81-245)||(16237308-16237470)
chr1 (132-245)||(10450112-10450225)
chr1 (77-245)||(12718772-12718931)
chr1 (158-245)||(19003733-19003820)
chr1 (136-245)||(37032263-37032372)
chr1 (80-175)||(23058459-23058552)
chr1 (153-245)||(19892898-19892987)
chr1 (210-245)||(17516350-17516385)
chr1 (190-243)||(23058319-23058372)
chr1 (71-125)||(16433161-16433215)
chr1 (132-165)||(41477005-41477038)
chr1 (86-165)||(29936419-29936496)
[»] chr8 (11 HSPs)
chr8 (77-245)||(40789511-40789677)
chr8 (86-245)||(15068597-15068753)
chr8 (77-245)||(2183606-2183771)
chr8 (139-245)||(2189907-2190013)
chr8 (135-245)||(8031062-8031170)
chr8 (81-243)||(10297381-10297542)
chr8 (155-245)||(4594213-4594301)
chr8 (71-165)||(17469257-17469349)
chr8 (132-205)||(14507280-14507350)
chr8 (80-178)||(15173883-15173979)
chr8 (71-163)||(30904050-30904139)
[»] scaffold0059 (1 HSPs)
scaffold0059 (95-244)||(70018-70165)
[»] chr6 (11 HSPs)
chr6 (68-245)||(29199876-29200051)
chr6 (77-245)||(18908816-18908981)
chr6 (88-242)||(20610993-20611145)
chr6 (77-245)||(9458587-9458751)
chr6 (190-245)||(9458242-9458297)
chr6 (94-215)||(17546919-17547038)
chr6 (77-165)||(256492-256578)
chr6 (86-165)||(32053090-32053167)
chr6 (86-165)||(27738774-27738851)
chr6 (86-183)||(9458842-9458937)
chr6 (80-165)||(14410858-14410941)
[»] scaffold0015 (1 HSPs)
scaffold0015 (132-245)||(55950-56063)
[»] chr5 (12 HSPs)
chr5 (86-245)||(23045001-23045157)
chr5 (77-245)||(2681139-2681304)
chr5 (136-243)||(12915397-12915504)
chr5 (77-245)||(20634103-20634270)
chr5 (77-245)||(20650217-20650384)
chr5 (68-194)||(12712549-12712673)
chr5 (68-194)||(12773813-12773937)
chr5 (132-245)||(43523683-43523794)
chr5 (132-234)||(18116560-18116661)
chr5 (94-245)||(12250894-12251041)
chr5 (190-245)||(10834133-10834188)
chr5 (132-245)||(34259183-34259290)
[»] scaffold0005 (1 HSPs)
scaffold0005 (80-235)||(211297-211449)
[»] scaffold0008 (2 HSPs)
scaffold0008 (87-245)||(67671-67827)
scaffold0008 (87-245)||(75514-75670)
[»] scaffold0184 (1 HSPs)
scaffold0184 (77-245)||(2891-3057)
[»] scaffold0182 (1 HSPs)
scaffold0182 (132-245)||(16890-17002)
[»] scaffold0036 (1 HSPs)
scaffold0036 (80-164)||(33396-33478)


Alignment Details
Target: chr3 (Bit Score: 114; Significance: 6e-58; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 77 - 241
Target Start/End: Original strand, 35687491 - 35687653
Alignment:
Q  77 tgagtttgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatg 176  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||  ||||  ||||||| | |||||||||||||| ||||| ||||||||||    
T  35687491 tgagtttgagttttccccgatttcataatacgggtacgagacgggtaactgtgatat--atgtacctatcccaaatccataccaaaaccctacccgaatg 35687588  T
Q  177 tacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttg 241  Q
    || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35687589 tagaaatgtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttg 35687653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 92 - 245
Target Start/End: Original strand, 40796152 - 40796303
Alignment:
Q  92 tccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatgtacaaaggtcatatt 191  Q
    |||||||||| ||||||| |||| |||||||||   | ||| ||  ||||||||||||||  ||||||||||||||||| ||||||| ||||||||||||    
T  40796152 tccgatttcaaaatacgggtacgggacgggtaatgaggatacat--gtacccaccccaaagtcatacccaaaccttaccggaatgtagaaaggtcatatt 40796249  T
Q  192 tttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    ||| |||||||| || ||||||||||||||||||| ||||||||||||||||||    
T  40796250 tttatttttgttaagggggttgataatgatatgtcctgttatttggtttgataa 40796303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 134 - 245
Target Start/End: Complemental strand, 2487828 - 2487717
Alignment:
Q  134 atatgtacccaccccaaatccatacccaaaccttacccgaatgtacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttat 233  Q
    ||||||||||||||| || ||||||||||||| ||||  |||||| |||||||||||||||||||||||| ||  |||||||||||||||| ||||||||    
T  2487828 atatgtacccaccccgaacccatacccaaaccctacctaaatgtagaaaggtcatatttttgtttttgttaaggaggttgataatgatatgccatgttat 2487729  T
Q  234 ttggtttgataa 245  Q
    ||||||||||||    
T  2487728 ttggtttgataa 2487717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 132 - 245
Target Start/End: Original strand, 1772452 - 1772565
Alignment:
Q  132 atatatgtacccaccccaaatccatacccaaaccttacccgaatgtacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgtt 231  Q
    ||||||||||||||||| ||  ||||| |||||| |||||||||||| ||||  |||||||||||||||||| || ||||||||||||||||||||||||    
T  1772452 atatatgtacccaccccgaactcatacacaaaccctacccgaatgtagaaagaccatatttttgtttttgttaagggggttgataatgatatgtcatgtt 1772551  T
Q  232 atttggtttgataa 245  Q
    |||| |||||||||    
T  1772552 attttgtttgataa 1772565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 196 - 245
Target Start/End: Complemental strand, 23330135 - 23330086
Alignment:
Q  196 tttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||||||||||    
T  23330135 tttttgttgagggggttaataatgatatgtcatgttattcggtttgataa 23330086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 165
Target Start/End: Original strand, 39655282 - 39655359
Alignment:
Q  86 gttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaacc 165  Q
    |||||| ||||| ||| || |||| || | |||||||||| ||  |||||| |||||||||||||| |||||||||||||    
T  39655282 gttttccccgatctcaaaacacgggtatgggacgggtaacagg--tatataggtacccaccccaaacccatacccaaacc 39655359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 6e-49; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 80 - 245
Target Start/End: Original strand, 38342522 - 38342684
Alignment:
Q  80 gtttgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatgtac 179  Q
    |||||||||||| ||||||| | |||||||||||| |||||||||| || ||||  ||||||||||||| || ||||||||||||| ||||||||||||     
T  38342522 gtttgagttttccccgattttaaaatacggatacgggacgggtaacggggatat--atgtacccaccccgaacccatacccaaaccctacccgaatgtag 38342619  T
Q  180 aaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    ||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38342620 aaaggtcgtgtttttgtttttgttgag-gggttgataatgatatgtcatgttatttggtttgataa 38342684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 93 - 245
Target Start/End: Complemental strand, 3547239 - 3547089
Alignment:
Q  93 ccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatgtacaaaggtcatattt 192  Q
    ||||||||| ||||||| |||| |||||||||| |  | ||||||||||||||||| || ||||| ||||||| |||||||||||| ||| |||||||||    
T  3547239 ccgatttcaaaatacgggtacgggacgggtaacgg--agatatatgtacccaccccgaacccatatccaaaccctacccgaatgtagaaatgtcatattt 3547142  T
Q  193 ttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    |||||||||||||| |||||||||||||||||  |||||||||||||||||||    
T  3547141 ttgtttttgttgagggggttgataatgatatgctatgttatttggtttgataa 3547089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 130 - 245
Target Start/End: Complemental strand, 42576650 - 42576535
Alignment:
Q  130 atatatatgtacccaccccaaatccatacccaaaccttacccgaatgtacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatg 229  Q
    ||||||||||||||||||  || |||||| |||||| |||||||||||| |||||||||||||||||||||||| ||  |||||||||||||||||||||    
T  42576650 atatatatgtacccaccctgaacccatacacaaaccctacccgaatgtagaaaggtcatatttttgtttttgttaaggaggttgataatgatatgtcatg 42576551  T
Q  230 ttatttggtttgataa 245  Q
    ||||||||||||||||    
T  42576550 ttatttggtttgataa 42576535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 80 - 223
Target Start/End: Complemental strand, 43371639 - 43371498
Alignment:
Q  80 gtttgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatgtac 179  Q
    |||||||||||| ||||||| | ||||||| |||| |||||||||| || ||||||  ||||||||||||||  |||||||||||| ||||||||||||     
T  43371639 gtttgagttttccccgattttaaaatacgggtacgggacgggtaacggggatatat--gtacccaccccaaactcatacccaaaccctacccgaatgtag 43371542  T
Q  180 aaaggtcatatttttgtttttgttgagtgggttgataatgatat 223  Q
    ||| ||||||||||||||||||||||| ||||||| ||||||||    
T  43371541 aaatgtcatatttttgtttttgttgagggggttgaaaatgatat 43371498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 80 - 245
Target Start/End: Complemental strand, 4428010 - 4427847
Alignment:
Q  80 gtttgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatgtac 179  Q
    ||||| |||||| |||| |||||||||||| || | |||||| ||| |  ||||||  | | ||||| | || ||||||||||||| ||||||||||||     
T  4428010 gtttgggttttccccgacttcataatacgggtaagggacgggcaacggtgatatat--ggatccacctcgaacccatacccaaaccctacccgaatgtag 4427913  T
Q  180 aaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    |||||| || ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  4427912 aaaggttatgtttttgtttttgttgagggggttcataatgatatgtcatgttatttggtttgataa 4427847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 132 - 245
Target Start/End: Complemental strand, 14331563 - 14331450
Alignment:
Q  132 atatatgtacccaccccaaatccatacccaaaccttacccgaatgtacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgtt 231  Q
    |||||||||||||| || || ||||||||||||| |||||||||||| ||| ||||||||||||||||||||||| ||||  |||||||||||  |||||    
T  14331563 atatatgtacccactccgaacccatacccaaaccctacccgaatgtagaaatgtcatatttttgtttttgttgagggggtatataatgatatgctatgtt 14331464  T
Q  232 atttggtttgataa 245  Q
    ||||||||||||||    
T  14331463 atttggtttgataa 14331450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 153 - 245
Target Start/End: Complemental strand, 26755766 - 26755676
Alignment:
Q  153 ccatacccaaaccttacccgaatgtacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    ||||||||||||| |||||||||||| |||||||||  |||| |||||||||||  |||||||||||||||| ||||||||||||||||||||    
T  26755766 ccatacccaaaccctacccgaatgtaaaaaggtcat--ttttatttttgttgaggaggttgataatgatatgccatgttatttggtttgataa 26755676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 132 - 245
Target Start/End: Complemental strand, 30978963 - 30978848
Alignment:
Q  132 atatatgtacccaccccaaatccatacccaaaccttacccgaatgtacaaaggtcatatttttgtttttgt--tgagtgggttgataatgatatgtcatg 229  Q
    ||||||||| ||||||| || ||||||||||||| ||||| |||||| ||||||||| ||||| ||||| |  |||| || |||||||| ||||||||||    
T  30978963 atatatgtatccaccccgaacccatacccaaaccctacccaaatgtagaaaggtcattttttttttttttttatgaggggtttgataattatatgtcatg 30978864  T
Q  230 ttatttggtttgataa 245  Q
    ||||||||||||||||    
T  30978863 ttatttggtttgataa 30978848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 132 - 245
Target Start/End: Complemental strand, 18485684 - 18485573
Alignment:
Q  132 atatatgtacccaccccaaatccatacccaaaccttacccgaatgtacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgtt 231  Q
    ||||||||||||||||  || ||||||||||||||||||| |||| | |||||| |||||||||||||  || || |||||||||||| |||| ||| ||    
T  18485684 atatatgtacccaccctgaacccatacccaaaccttacccaaatgcagaaaggttatatttttgtttt--tttagggggttgataatggtatgccatctt 18485587  T
Q  232 atttggtttgataa 245  Q
    ||||||||||||||    
T  18485586 atttggtttgataa 18485573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 132 - 245
Target Start/End: Original strand, 6164526 - 6164644
Alignment:
Q  132 atatatgtacccaccccaaatccatacccaaaccttacccgaatgtacaaaggtcatatttttg-----tttttgttgagtgggttgataatgatatgtc 226  Q
    ||||||||||||||||| ||  |||||| | ||| ||||||||| || |||||||||||||||      ||||||||||  ||||||||||||||||| |    
T  6164526 atatatgtacccaccccgaactcatacctagaccctacccgaatatagaaaggtcatattttttatttttttttgttgaaggggttgataatgatatgcc 6164625  T
Q  227 atgttatttggtttgataa 245  Q
    |||||||||| ||||||||    
T  6164626 atgttatttgatttgataa 6164644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 244
Target Start/End: Original strand, 24051696 - 24051781
Alignment:
Q  157 acccaaaccttacccgaatgtacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgata 244  Q
    ||||| ||| |||||||||||| ||||||| | |||||  | |||||||| ||||||||||||||||| ||| |||||||||||||||    
T  24051696 acccataccctacccgaatgtagaaaggtcgttttttt--tgttgttgagggggttgataatgatatgccatattatttggtttgata 24051781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 44057919 - 44057860
Alignment:
Q  132 atatatgtacccacccca-aatccatacccaaaccttacccgaatgtacaaaggtcatat 190  Q
    |||||||||||||||||  || ||||||||||||| |||||||||||| |||||||||||    
T  44057919 atatatgtacccacccccgaacccatacccaaaccctacccgaatgtagaaaggtcatat 44057860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 44057833 - 44057797
Alignment:
Q  209 ggttgataatgatatgtcatgttatttggtttgataa 245  Q
    ||||||||||||||||  |||||||||||||||||||    
T  44057833 ggttgataatgatatgctatgttatttggtttgataa 44057797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 96 - 245
Target Start/End: Original strand, 16216673 - 16216820
Alignment:
Q  96 atttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatgtacaaaggtcatatttttg 195  Q
    ||||||||||||||||||||||||||||| ||| | |||||||||||  ||||||| || |||||||||| |||||||||||| ||| ||||| ||||||    
T  16216673 atttcataatacggatacgagacgggtaa-tgg-agatatatgtaccttccccaaacccttacccaaaccctacccgaatgtagaaatgtcatgtttttg 16216770  T
Q  196 tttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16216771 tttttgttgagggggttgataatgatatgtcatgttatttggtttgataa 16216820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 132 - 245
Target Start/End: Complemental strand, 568458 - 568345
Alignment:
Q  132 atatatgtacccaccccaaatccatacccaaaccttacccgaatgtacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgtt 231  Q
    ||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||| ||||||||||||||    
T  568458 atatatgtacccaccccgaacccatacccaaaccttacccgaatgtagaaaggtcatatttttgtttttgttaagggggttgatagtgatatgtcatgtt 568359  T
Q  232 atttggtttgataa 245  Q
    ||||||||||||||    
T  568358 atttggtttgataa 568345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 68 - 245
Target Start/End: Original strand, 30266322 - 30266497
Alignment:
Q  68 cgatttgattgagtttgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaacctt 167  Q
    |||||||| || |||||  |||| |||||||||||||||||| |||  |||||||||| || ||||||  ||| ||||||| || ||||||||||||| |    
T  30266322 cgatttgactgggtttggtttttttccgatttcataatacgggtacaggacgggtaacggggatatat--gtatccaccccgaacccatacccaaaccct 30266419  T
Q  168 acccgaatgtacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    ||| ||||||| ||||||| | ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  30266420 acctgaatgtagaaaggtcgtgtttttgtttttgttgagagggttgataatgatatgacatgttatttggtttgataa 30266497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 68 - 245
Target Start/End: Complemental strand, 30285866 - 30285691
Alignment:
Q  68 cgatttgattgagtttgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaacctt 167  Q
    |||||||| || |||||  |||| |||||||||||||||||| |||  |||||||||| || ||||||  ||| ||||||| || ||||||||||||| |    
T  30285866 cgatttgactgggtttggtttttttccgatttcataatacgggtacaggacgggtaacggggatatat--gtatccaccccgaacccatacccaaaccct 30285769  T
Q  168 acccgaatgtacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    ||| ||||||| ||||||| | ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  30285768 acctgaatgtagaaaggtcgtgtttttgtttttgttgagagggttgataatgatatgacatgttatttggtttgataa 30285691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 69 - 245
Target Start/End: Complemental strand, 21544681 - 21544507
Alignment:
Q  69 gatttgattgagtttgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaacctta 168  Q
    |||||||||| |||||  ||||  ||||||||| ||||||| |||| ||| |||||  || ||||||  ||||||||||| || ||||||||||||| ||    
T  21544681 gatttgattgggtttggatttttcccgatttcaaaatacgggtacgggacaggtaatggggatatat--gtacccaccccgaacccatacccaaacccta 21544584  T
Q  169 cccgaatgtacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    |||||| ||| |||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||    
T  21544583 cccgaaggtagaaaggtcatatttttgtttttgttaagggggttgataatgatatgccatgttatttggtttgataa 21544507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 86 - 245
Target Start/End: Complemental strand, 18423675 - 18423518
Alignment:
Q  86 gttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatgtacaaaggt 185  Q
    ||||| ||| ||||||||||||||||||| ||||||||||  |   |||||||||| || ||| || ||||||| ||||| |||||||||||| ||||||    
T  18423675 gttttttccaatttcataatacggatacgggacgggtaac--gaggatatatgtactcatcccgaacccatacctaaaccctacccgaatgtagaaaggt 18423578  T
Q  186 catatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    ||| ||||||||||||||||| |  |||||||||||||||||||||||||||||||||||    
T  18423577 catgtttttgtttttgttgagggaattgataatgatatgtcatgttatttggtttgataa 18423518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 71 - 245
Target Start/End: Complemental strand, 29527912 - 29527741
Alignment:
Q  71 tttgattgagtttgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacc 170  Q
    |||||| | ||||| |||||| ||||||||| ||||||| |||| |||||||||| || ||||||  ||||||||||| || ||||||||||||| || |    
T  29527912 tttgatagggtttgggttttccccgatttcaaaatacgggtacgtgacgggtaacggggatatat--gtacccaccccgaacccatacccaaaccctatc 29527815  T
Q  171 cgaatgtacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    |||||||| |||||||||| |||||||||||||||| | |||||||||||||||  |||||||||| ||||||||    
T  29527814 cgaatgtagaaaggtcata-ttttgtttttgttgagggagttgataatgatatgctatgttatttgatttgataa 29527741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 93 - 245
Target Start/End: Original strand, 1866566 - 1866715
Alignment:
Q  93 ccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatgtacaaaggtcatattt 192  Q
    ||||||||| ||||||| ||||||||||||||   ||  ||||||||| ||||||| || ||||||||||||  |||||||||||| |||||||||  ||    
T  1866566 ccgatttcaaaatacgggtacgagacgggtaa--tgcggatatatgtatccaccccgaacccatacccaaactctacccgaatgtagaaaggtcat-gtt 1866662  T
Q  193 ttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  1866663 ttgtttttgtttagggggttgataatgatatgtcatgttatttggtttgataa 1866715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 68 - 245
Target Start/End: Original strand, 10574411 - 10574592
Alignment:
Q  68 cgatttgattgagtttgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaacctt 167  Q
    |||||||| || |||||| ||||| ||||||||||||||| | |||| |||||||||| || ||||  |||||||| |||| ||  |||||||||||| |    
T  10574411 cgatttgactgggtttgaattttccccgatttcataatacaggtacgggacgggtaacggggatat--atgtacccgccccgaactcatacccaaaccct 10574508  T
Q  168 acccgaatgtacaaaggtcatatttttgtttt------tgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    ||||||||||| |||| |||| ||||||||||      |||||||  |||||||||||||||||||||||||||||||||||||    
T  10574509 acccgaatgtagaaagatcatgtttttgtttttatttgtgttgaggaggttgataatgatatgtcatgttatttggtttgataa 10574592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 80 - 235
Target Start/End: Original strand, 14605929 - 14606081
Alignment:
Q  80 gtttgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatgtac 179  Q
    ||||| |||||||||||||||| ||||||| ||||||||||||||| || ||||  ||||||||||||| || ||||||||||||  |||| |||||||     
T  14605929 gtttgggttttctccgatttcaaaatacgggtacgagacgggtaacagggatat--atgtacccaccccgaacccatacccaaactctacctgaatgtag 14606026  T
Q  180 aaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttattt 235  Q
    ||| ||||||||||||||||| || || | ||||||||||||||| ||||||||||    
T  14606027 aaatgtcatatttttgttttt-tttagggagttgataatgatatgccatgttattt 14606081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 94 - 245
Target Start/End: Complemental strand, 45065326 - 45065177
Alignment:
Q  94 cgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatgtacaaaggtcatatttt 193  Q
    |||||||| ||||||| |||| |||| ||||| || ||||||  ||||||| ||| ||  |||||||||||| |||||||||||| |||  |||||||||    
T  45065326 cgatttcaaaatacgggtacgggacgagtaacagggatatat--gtacccatcccgaacgcatacccaaaccctacccgaatgtagaaatatcatatttt 45065229  T
Q  194 tgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    ||||||||||||| |||||||||||||||||  |||||||||||||||||||    
T  45065228 tgtttttgttgagggggttgataatgatatgctatgttatttggtttgataa 45065177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 66 - 245
Target Start/End: Complemental strand, 31782718 - 31782543
Alignment:
Q  66 ctcgatttgattgagtttgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaacc 165  Q
    |||||||||| || ||||| |||||| ||||||||| ||||||| ||||  || |||||| || ||||||  ||||||||||||||  ||||||||||||    
T  31782718 ctcgatttgactgggtttgggttttccccgatttcaaaatacgggtacggtacaggtaacggggatatat--gtacccaccccaaactcatacccaaacc 31782621  T
Q  166 ttacccgaatgtacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    ||||| ||||| | |||||| |||||||||||||  || || |||||||||||| |||| ||| ||||||||||||||||    
T  31782620 ttacctgaatgcagaaaggttatatttttgtttt--tttagggggttgataatggtatgccatcttatttggtttgataa 31782543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 155 - 243
Target Start/End: Complemental strand, 30672981 - 30672893
Alignment:
Q  155 atacccaaaccttacccgaatgtacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgat 243  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||    
T  30672981 atacccaaaccctacccgaatgtagaaaggtcatatttttgtttttgttaagggggttgataatgatatgccatgttatttggtttgat 30672893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 153 - 245
Target Start/End: Original strand, 41915060 - 41915152
Alignment:
Q  153 ccatacccaaaccttacccgaatgtacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    ||||||||||||| ||| |||||||| ||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  41915060 ccatacccaaaccctacacgaatgtagaaatgtcatatttttgtttttgttgagggggttgataatgatatgccatgttatttggtttgataa 41915152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 87 - 245
Target Start/End: Original strand, 31415942 - 31416097
Alignment:
Q  87 ttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatgtacaaaggtc 186  Q
    ||||||||||||||| ||||||| |||| || || |||| || ||||||  ||||||||||| || ||| || |||||| ||||  |||||| |||||||    
T  31415942 ttttctccgatttcaaaatacgggtacgggatggataacagggatatat--gtacccaccccgaacccacactcaaaccctacca-aatgtagaaaggtc 31416038  T
Q  187 atatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    |||||||| ||||||||||| ||||||||||||||||| ||||||| ||||||||||||    
T  31416039 atatttttatttttgttgagggggttgataatgatatgccatgttagttggtttgataa 31416097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 140 - 245
Target Start/End: Complemental strand, 11173002 - 11172897
Alignment:
Q  140 acccaccccaaatccatacccaaaccttacccgaatgtacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtt 239  Q
    ||||||||| || ||||||||||||| | |||||||||| |||||||||||||| ||||||||| ||  |||||||||||||||| ||||||||||||||    
T  11173002 acccaccccgaacccatacccaaacccttcccgaatgtagaaaggtcatattttagtttttgttaaggaggttgataatgatatgccatgttatttggtt 11172903  T
Q  240 tgataa 245  Q
    ||||||    
T  11172902 tgataa 11172897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 245
Target Start/End: Complemental strand, 24637233 - 24637122
Alignment:
Q  132 atatatgtacccaccccaaatccatacccaaaccttacccgaatgtacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgtt 231  Q
    |||||||| |||||||   | ||||||||||||| |||| ||||||| || |||||| ||||||||||| || || ||||||||||||||||| ||||||    
T  24637233 atatatgtgcccacccaggacccatacccaaaccctacctgaatgtagaa-ggtcatgtttttgtttttttt-agggggttgataatgatatgccatgtt 24637136  T
Q  232 atttggtttgataa 245  Q
    ||||||||||||||    
T  24637135 atttggtttgataa 24637122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 80 - 245
Target Start/End: Complemental strand, 47103829 - 47103661
Alignment:
Q  80 gtttgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatgtac 179  Q
    ||||| |||||| || |||||| ||||||| |||| | ||||||||  ||  ||||||||||||||||| || ||||||||||||| ||||||||||||     
T  47103829 gtttgggttttccccaatttcaaaatacgggtacggggcgggtaac--gcggatatatgtacccaccccgaacccatacccaaaccctacccgaatgtag 47103732  T
Q  180 aaaggtcatatttttgtttttgtt-----gagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
     |||  ||||||||| ||||| ||      |  | |||||||| ||||||| |||||||||||||||||||    
T  47103731 gaagaccatattttttttttttttttttgtaaggagttgataaagatatgttatgttatttggtttgataa 47103661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 245
Target Start/End: Original strand, 15733533 - 15733685
Alignment:
Q  83 tgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatgtacaaa 182  Q
    |||||||||  |||||||| ||||||| ||||||||||||||| |  | ||||||||||||||||| ||  | ||| |||||| || | |||| || |||    
T  15733533 tgagttttcctcgatttcaaaatacgggtacgagacgggtaacgg--agatatatgtacccaccccgaactcgtactcaaaccctagctgaatatagaaa 15733630  T
Q  183 ggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
     ||||| ||||| |        || ||||||||||||||||| ||||||||||||||||||||    
T  15733631 tgtcattttttttt--------agggggttgataatgatatgccatgttatttggtttgataa 15733685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 15132185 - 15132259
Alignment:
Q  132 atatatgtacccaccccaaatccatacccaaaccttacccgaatgtacaaaggtcatatttttgtttttgttgag 206  Q
    |||||||| |||||||  || ||||||  ||||| ||||| |||||| ||| |||||||||||||||||||||||    
T  15132185 atatatgtgcccaccctgaacccatacataaaccctacccaaatgtagaaatgtcatatttttgtttttgttgag 15132259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 165
Target Start/End: Complemental strand, 26564925 - 26564839
Alignment:
Q  77 tgagtttgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaacc 165  Q
    |||||||||| |||| ||||||||| ||  ||| || | |||||||||| ||  |||||| ||||||||||| || |||||||||||||    
T  26564925 tgagtttgagctttccccgatttcaaaacgcgggtatgggacgggtaacggg--tatataggtacccaccccgaaaccatacccaaacc 26564839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 165
Target Start/End: Original strand, 6382282 - 6382359
Alignment:
Q  86 gttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaacc 165  Q
    |||||||||||| ||| || |||| || | |||||||||| ||  |||||| ||||||||||| || |||||||||||||    
T  6382282 gttttctccgatctcaaaacacgggtatgggacgggtaacggg--tatataggtacccaccccgaacccatacccaaacc 6382359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 166
Target Start/End: Original strand, 12825456 - 12825549
Alignment:
Q  71 tttgattgagtttgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaacct 166  Q
    ||||| |||||||| |||||| ||||||||| || |||| || | |||||||||| |  ||||||| ||||||||||  || | ||||||||||||    
T  12825456 tttgactgagtttgggttttccccgatttcaaaacacgggtatgggacgggtaacgg--atatatacgtacccaccctgaacctatacccaaacct 12825549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 77 - 244
Target Start/End: Original strand, 128121 - 128286
Alignment:
Q  77 tgagtttgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatg 176  Q
    |||||||| ||||| ||| |||||||||||||| |||| |||||||||  ||   ||||||||||||||||| || ||||||||||||| ||||| ||||    
T  128121 tgagtttgggttttttccaatttcataatacgggtacgggacgggtaatggg--gatatatgtacccaccccgaacccatacccaaaccctacccaaatg 128218  T
Q  177 tacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgata 244  Q
    || ||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  128219 tagaaaggtcatatttttatttttgttgagggggttgaaaatgatatgtcatgttatttggtttgata 128286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 87 - 244
Target Start/End: Original strand, 105479 - 105634
Alignment:
Q  87 ttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatgtacaaaggtc 186  Q
    |||| ||||||||| |||||||| |||| |||||||||| || ||||  ||||||||||||| || ||||||||||||| ||||| |||||  |||||||    
T  105479 ttttttccgatttcttaatacgggtacgggacgggtaacagggatat--atgtacccaccccgaacccatacccaaaccctacccaaatgttgaaaggtc 105576  T
Q  187 atatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgata 244  Q
    || ||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  105577 atgtttttatttttgttgagggggttgaaaatgatatgtcatgttatttggtttgata 105634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 80 - 245
Target Start/End: Complemental strand, 31426098 - 31425935
Alignment:
Q  80 gtttgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatgtac 179  Q
    ||||| |||||| ||||||| | ||||||| || |||||||||||| || ||||||  ||| ||||||| ||  |||||||||||| ||||||||||||     
T  31426098 gtttgggttttccccgatttaaaaatacgggtatgagacgggtaacggggatatat--gtatccaccccgaacgcatacccaaaccctacccgaatgtag 31426001  T
Q  180 aaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31426000 aaaggtcatgtttttgtttttgttgagggggttgataatgatatgtcatgttatttggtttgataa 31425935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 86 - 245
Target Start/End: Complemental strand, 18684058 - 18683901
Alignment:
Q  86 gttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatgtacaaaggt 185  Q
    |||||| ||||||||| ||||||| |||| |||||||||| || ||||||  ||| ||||| | || ||||||||||||| |||||||||||| | ||||    
T  18684058 gttttccccgatttcaaaatacgggtacgggacgggtaacagggatatat--gtatccacctcgaacccatacccaaaccctacccgaatgtagataggt 18683961  T
Q  186 catatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    |||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||    
T  18683960 catatttttgtttttgtttagggggttgataatgatatgccatgttatttggtttgataa 18683901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 93 - 240
Target Start/End: Complemental strand, 32546269 - 32546124
Alignment:
Q  93 ccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatgtacaaaggtcatattt 192  Q
    ||||||||| ||||||| ||||  ||||||||| || ||||||  ||||||||||| || ||||||||||||| |||||||||||| ||| |||||||||    
T  32546269 ccgatttcaaaatacgggtacggaacgggtaacggggatatat--gtacccaccccgaacccatacccaaaccctacccgaatgtagaaatgtcatattt 32546172  T
Q  193 ttgtttttgttgagtgggttgataatgatatgtcatgttatttggttt 240  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||    
T  32546171 ttgtttttgttgagggggttgataatgatatgccatgttatttggttt 32546124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 77 - 245
Target Start/End: Original strand, 29014952 - 29015124
Alignment:
Q  77 tgagtttgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtac----ccaccccaaatccatacccaaaccttacccg 172  Q
    ||||||||||||||  ||||||||| ||||||| |||| ||||| || | || |||||||| ||     ||||||| || |||||| |||||| ||||||    
T  29014952 tgagtttgagtttttcccgatttcaaaatacgggtacgggacggatagcggggatatatatatatatatccaccccgaacccatactcaaaccctacccg 29015051  T
Q  173 aatgtacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    | |||| ||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||    
T  29015052 actgtagaaaggtcatatttttgtttttgttgagggggttgataattatatggcatgttatttggtttgataa 29015124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 87 - 245
Target Start/End: Complemental strand, 29157434 - 29157276
Alignment:
Q  87 ttttctccgatttcataata--cggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatgtacaaagg 184  Q
    ||||| ||||||||||||||  ||| || |||||||||||| || ||||||  ||| |||||| ||| || |||||||||| |||||| ||||| |||||    
T  29157434 ttttccccgatttcataatatacgggtatgagacgggtaacggggatatat--gtatccaccctaaacccgtacccaaaccctacccggatgtagaaagg 29157337  T
Q  185 tcatatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    |||| ||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||    
T  29157336 tcatgtttttgtttttgttgagggggttggtaataatatgtcatgttatttggtttgataa 29157276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 153 - 245
Target Start/End: Original strand, 42908104 - 42908196
Alignment:
Q  153 ccatacccaaaccttacccgaatgtacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    ||||||||||||| |||||||||||| ||||||| |||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||    
T  42908104 ccatacccaaaccctacccgaatgtagaaaggtcgtatttttgtttttgttaagggggttgataatgatatgccatgttatttggtttgataa 42908196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 95 - 245
Target Start/End: Complemental strand, 28309567 - 28309420
Alignment:
Q  95 gatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatgtacaaaggtcatattttt 194  Q
    ||||||| ||||||| |||| |||||||||| || ||||||  ||| | ||||| ||  |||||||||||| |||||||||||| ||| ||||| |||||    
T  28309567 gatttcaaaatacgggtacgggacgggtaacgggaatatat--gtatctaccccgaactcatacccaaaccctacccgaatgtagaaatgtcatgttttt 28309470  T
Q  195 gtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    |||||| ||||| |||||||||||||||||||||||||||| |||||||||    
T  28309469 gtttttattgag-gggttgataatgatatgtcatgttatttagtttgataa 28309420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 77 - 245
Target Start/End: Original strand, 30839134 - 30839300
Alignment:
Q  77 tgagtttgagttttctccgatttcataatacggatacgagacgggtaac-tggcatatatatgtacccaccccaaatccatacccaaaccttacccgaat 175  Q
    ||||||||||||||| | ||||||| ||||||| || | |||| ||||| |||   ||||||||| | ||||| ||  ||| ||||||||||||||||||    
T  30839134 tgagtttgagttttccctgatttcaaaatacgggtatgggacgagtaacgtgg---atatatgtatctaccccgaactcatgcccaaaccttacccgaat 30839230  T
Q  176 gtacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    ||| |||||||||||||||||||||||| ||  |||||||||||||||| || ||||| |||||||||||    
T  30839231 gtagaaaggtcatatttttgtttttgtttaggtggttgataatgatatgccaagttatgtggtttgataa 30839300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 77 - 245
Target Start/End: Complemental strand, 27063231 - 27063067
Alignment:
Q  77 tgagtttgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatg 176  Q
    |||||||||||||||  |||||||| ||||||| |||  ||||| |||| || ||||||  |||| |||||| ||  |||||||||||| ||||||||||    
T  27063231 tgagtttgagttttcctcgatttcaaaatacgggtacaggacggataacggggatatat--gtactcaccccgaactcatacccaaaccctacccgaatg 27063134  T
Q  177 tacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    || ||| ||||||||||||||||  || || |||||||||||||||| |||| ||||||||||||||||    
T  27063133 tagaaaagtcatatttttgtttt--tttagggggttgataatgatatctcatcttatttggtttgataa 27063067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 68 - 245
Target Start/End: Complemental strand, 21750884 - 21750713
Alignment:
Q  68 cgatttgattgagtttgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaacctt 167  Q
    ||||||||| | ||||  |||||  ||||||||| |||||||||| ||||||||| || || ||||||  ||||||||| | ||  |||||||||||| |    
T  21750884 cgatttgatcgggtttaggtttttcccgatttcaaaatacggatatgagacgggtgacggggatatat--gtacccacctcgaactcatacccaaaccct 21750787  T
Q  168 acccgaatgtacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    || ||||| || ||||||||| ||||| ||||    ||| ||||||||||||||||||||||||||||||||||||||    
T  21750786 actcgaatctagaaaggtcatttttttttttt----gagggggttgataatgatatgtcatgttatttggtttgataa 21750713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 132 - 245
Target Start/End: Original strand, 37103180 - 37103293
Alignment:
Q  132 atatatgtacccaccccaaatccatacccaaaccttacccgaatgtacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgtt 231  Q
    ||||||| ||||| ||| ||  |||| ||||||| |||||||||||| ||||||||| ||||||||||||||||  | ||||||||||||||| ||||||    
T  37103180 atatatgcacccatcccgaacacatatccaaaccctacccgaatgtagaaaggtcatgtttttgtttttgttgacggagttgataatgatatgccatgtt 37103279  T
Q  232 atttggtttgataa 245  Q
    ||||||||||||||    
T  37103280 atttggtttgataa 37103293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 132 - 245
Target Start/End: Complemental strand, 43218323 - 43218210
Alignment:
Q  132 atatatgtacccaccccaaatccatacccaaaccttacccgaatgtacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgtt 231  Q
    |||||||||| |||||| ||  |||||||||||| || || |||||| ||||||| | ||||||||||||||||| | ||||||||||||||| ||||||    
T  43218323 atatatgtactcaccccgaactcatacccaaaccctagccaaatgtaaaaaggtcgtgtttttgtttttgttgagggagttgataatgatatgacatgtt 43218224  T
Q  232 atttggtttgataa 245  Q
    ||||||||||||||    
T  43218223 atttggtttgataa 43218210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 153 - 245
Target Start/End: Complemental strand, 2472014 - 2471922
Alignment:
Q  153 ccatacccaaaccttacccgaatgtacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    ||||||||||||| |||||||||||| ||||||  | || || ||||||||||| |||||||||||||| | |||||||||||||||||||||    
T  2472014 ccatacccaaaccctacccgaatgtagaaaggtggtgttcttatttttgttgagggggttgataatgatgtatcatgttatttggtttgataa 2471922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 80 - 223
Target Start/End: Original strand, 44845138 - 44845278
Alignment:
Q  80 gtttgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatgtac 179  Q
    ||||| |||||| ||||||||||||||||| |||| ||||| |||   | |||||| |  ||||||||| || |||||| |||||| | ||||||||||     
T  44845138 gtttgggttttccccgatttcataatacgggtacgggacggttaatgaggatatattt--acccaccccgaacccatacacaaaccctgcccgaatgtag 44845235  T
Q  180 aaaggtcatatttttgtttttgttgagtgggttgataatgatat 223  Q
    |||||||||  |||||||||||||||| |||| |||||||||||    
T  44845236 aaaggtcatgcttttgtttttgttgag-gggtcgataatgatat 44845278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 80 - 218
Target Start/End: Complemental strand, 22973478 - 22973342
Alignment:
Q  80 gtttgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatgtac 179  Q
    ||||| ||||||  |||||||| ||||||| |||| |||||||||  || |||| |  ||||||||| | || ||||||||||||| ||| ||||||||     
T  22973478 gtttgggttttccacgatttcaaaatacgggtacgggacgggtaatggggatatct--gtacccacctcgaacccatacccaaaccctactcgaatgtag 22973381  T
Q  180 aaaggtcatatttttgtttttgttgagtgggttgataat 218  Q
    ||| |||||||||||||||||||| ||  ||||||||||    
T  22973380 aaatgtcatatttttgtttttgttaaggaggttgataat 22973342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 245
Target Start/End: Original strand, 27062375 - 27062430
Alignment:
Q  190 tttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    ||||||||||||||||| || ||||||||||||| |||||||||||||||||||||    
T  27062375 tttttgtttttgttgaggggattgataatgatatatcatgttatttggtttgataa 27062430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 183
Target Start/End: Complemental strand, 27063418 - 27063323
Alignment:
Q  86 gttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatgtacaaag 183  Q
    |||||| ||||||| ||||||||| |||| |||||||||| || ||||||  ||||||||||| ||  ||||||| |||| |||||||||||| ||||    
T  27063418 gttttccccgatttaataatacgggtacgggacgggtaacgggaatatat--gtacccaccccgaactcataccccaaccctacccgaatgtagaaag 27063323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 2472076 - 2472028
Alignment:
Q  77 tgagtttgagttttctccgatttcataatacggatacgagacgggtaac 125  Q
    |||||||||||||| |||||||||||||||||| ||| |||||||||||    
T  2472076 tgagtttgagttttttccgatttcataatacgggtactagacgggtaac 2472028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 163
Target Start/End: Original strand, 25979926 - 25980001
Alignment:
Q  86 gttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaa 163  Q
    |||||| ||||||||| || || | || |||||||||||| |  ||||||||||||||||||||||  ||||||||||    
T  25979926 gttttccccgatttcaaaacacaggtatgagacgggtaacgg--atatatatgtacccaccccaaactcatacccaaa 25980001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 77 - 225
Target Start/End: Original strand, 35069889 - 35070035
Alignment:
Q  77 tgagtttgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatg 176  Q
    ||||||||||||||| ||||||||||||||||| ||| ||||||||||| || ||||  ||||||||||||| || |||||| |||||| ||||||||||    
T  35069889 tgagtttgagttttccccgatttcataatacgggtacaagacgggtaacagggatat--atgtacccaccccgaacccatactcaaaccctacccgaatg 35069986  T
Q  177 tacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgt 225  Q
    || |||| |||||||||||||||||||||| ||||||||||||||||||    
T  35069987 tagaaagatcatatttttgtttttgttgagggggttgataatgatatgt 35070035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 81 - 245
Target Start/End: Original strand, 16237308 - 16237470
Alignment:
Q  81 tttgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatgtaca 180  Q
    |||| |||||| ||||||||| ||||||| || | ||||||||||  | ||||||  ||||  ||||| || ||||||||||||| |||||||||||| |    
T  16237308 tttgggttttccccgatttcaaaatacgggtaagggacgggtaacgaggatatat--gtactaaccccgaacccatacccaaaccctacccgaatgtaga 16237405  T
Q  181 aaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16237406 aatgtcatatttttgtttttgttgagggggttgataatgatatgtcatgttatttggtttgataa 16237470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 132 - 245
Target Start/End: Original strand, 10450112 - 10450225
Alignment:
Q  132 atatatgtacccaccccaaatccatacccaaaccttacccgaatgtacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgtt 231  Q
    ||||||||||||||||| ||  |||||||||||| |||||||||||| ||||||||| ||||||||||||||||| ||||| ||||||||||||||||||    
T  10450112 atatatgtacccaccccgaactcatacccaaaccctacccgaatgtagaaaggtcatgtttttgtttttgttgagggggtttataatgatatgtcatgtt 10450211  T
Q  232 atttggtttgataa 245  Q
    ||||||||| ||||    
T  10450212 atttggtttaataa 10450225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 77 - 245
Target Start/End: Original strand, 12718772 - 12718931
Alignment:
Q  77 tgagtttgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatg 176  Q
    ||||||||  ||||| ||||||||||||||||  |||||||||||||||  | | ||||||||||||||||  || ||||||||||||| ||||| ||||    
T  12718772 tgagtttggattttccccgatttcataatacgtgtacgagacgggtaac--ggaaatatatgtacccaccctgaacccatacccaaacc-tacccaaatg 12718868  T
Q  177 tacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    || ||||||||      ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12718869 taaaaaggtca------tgtttttgttgagggggttgataatgatatgtcatgttatttggtttgataa 12718931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 158 - 245
Target Start/End: Original strand, 19003733 - 19003820
Alignment:
Q  158 cccaaaccttacccgaatgtacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    |||||||| |||||||||||| |||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||    
T  19003733 cccaaaccctacccgaatgtagaaaggtcatatttttgtttttgtttagggggttgataatgatatgccatgttatttggtttgataa 19003820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 136 - 245
Target Start/End: Complemental strand, 37032372 - 37032263
Alignment:
Q  136 atgtacccaccccaaatccatacccaaaccttacccgaatgtacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttattt 235  Q
    ||||||||||| | || |||||| |||||   ||||||||||| ||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||    
T  37032372 atgtacccacctcgaacccatactcaaactacacccgaatgtagaaaggtcatgtttttgtttttgttgatggggttgataatgatatgtcatgttattt 37032273  T
Q  236 ggtttgataa 245  Q
    ||||||||||    
T  37032272 ggtttgataa 37032263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 80 - 175
Target Start/End: Complemental strand, 23058552 - 23058459
Alignment:
Q  80 gtttgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaat 175  Q
    |||||||||||||||||||||| ||| ||  ||||||||||||||| ||   ||||| ||||||||||| || ||||||||||||| |||||||||    
T  23058552 gtttgagttttctccgatttcaaaatgcgagtacgagacgggtaacggg--gatataggtacccaccccgaacccatacccaaaccctacccgaat 23058459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 153 - 245
Target Start/End: Complemental strand, 19892987 - 19892898
Alignment:
Q  153 ccatacccaaaccttacccgaatgtacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    ||||||||| ||| |||| ||||||| |||  ||||||||||||||||    || ||||||||||||||||||||| ||||||||||||||||    
T  19892987 ccatacccataccctacctgaatgtagaaaactcatatttttgtttttt---agggggttgataatgatatgtcatcttatttggtttgataa 19892898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 210 - 245
Target Start/End: Complemental strand, 17516385 - 17516350
Alignment:
Q  210 gttgataatgatatgtcatgttatttggtttgataa 245  Q
    ||||||||||||||||||||||||||||||||||||    
T  17516385 gttgataatgatatgtcatgttatttggtttgataa 17516350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 23058372 - 23058319
Alignment:
Q  190 tttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgat 243  Q
    ||||| || |||||||| ||||| ||||||||||| ||||||||||||||||||    
T  23058372 ttttttttgttgttgagggggttaataatgatatgacatgttatttggtttgat 23058319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 16433161 - 16433215
Alignment:
Q  71 tttgattgagtttgagttttctccgatttcataatacggatacgagacgggtaac 125  Q
    |||||||| |||||||||||||||||||||| || |||| || | ||||||||||    
T  16433161 tttgattgggtttgagttttctccgatttcaaaacacgggtatgggacgggtaac 16433215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 165
Target Start/End: Original strand, 41477005 - 41477038
Alignment:
Q  132 atatatgtacccaccccaaatccatacccaaacc 165  Q
    ||||||||||||||||| ||||||||||||||||    
T  41477005 atatatgtacccaccccgaatccatacccaaacc 41477038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 165
Target Start/End: Complemental strand, 29936496 - 29936419
Alignment:
Q  86 gttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaacc 165  Q
    |||||| ||||| ||| ||||||| || | |||||||||| ||  |||||| ||||||||||| || |||||||||||||    
T  29936496 gttttccccgatctcaaaatacgggtatgggacgggtaacggg--tatataggtacccaccccgaacccatacccaaacc 29936419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 77 - 245
Target Start/End: Complemental strand, 40789677 - 40789511
Alignment:
Q  77 tgagtttgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatg 176  Q
    |||||||| |||||| || |||||||||||  | |||  |||||||||| || ||||||  ||||||||||| || | ||||||||||  ||||||||||    
T  40789677 tgagtttgggttttccccaatttcataatataggtactggacgggtaacagggatatat--gtacccaccccgaacctatacccaaactctacccgaatg 40789580  T
Q  177 tacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    || ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  40789579 tagaaaggtcatgtttttgtttttgttgagggggttgataatgatatgtcatgttatttggtttgataa 40789511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 86 - 245
Target Start/End: Original strand, 15068597 - 15068753
Alignment:
Q  86 gttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatgtacaaaggt 185  Q
    |||||| ||||||||| ||||||| |||| ||| |||||| ||   ||||||||| ||||||| || |||||||| |||| |||||||||||| ||||||    
T  15068597 gttttccccgatttcaaaatacgggtacgggacaggtaacggg---atatatgtatccaccccgaacccatacccgaaccctacccgaatgtagaaaggt 15068693  T
Q  186 catatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    ||||||||| |||||||| || ||||||||||||||||| ||||||||||||||||||||    
T  15068694 catatttttatttttgtttagggggttgataatgatatgccatgttatttggtttgataa 15068753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 77 - 245
Target Start/End: Original strand, 2183606 - 2183771
Alignment:
Q  77 tgagtttgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatg 176  Q
    ||||||||  ||||||||||||||| ||||||| |||||||  ||||| ||| | ||||||||||||||||| ||  ||||| |||||| ||||||||||    
T  2183606 tgagtttggattttctccgatttcaaaatacgggtacgagagaggtaa-tgg-agatatatgtacccaccccgaactcatactcaaaccctacccgaatg 2183703  T
Q  177 tacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    || |||||||||||||||||||||||| ||  |||||||||||||||| ||||||||||||||||||||    
T  2183704 tagaaaggtcatatttttgtttttgttaaggaggttgataatgatatg-catgttatttggtttgataa 2183771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 139 - 245
Target Start/End: Original strand, 2189907 - 2190013
Alignment:
Q  139 tacccaccccaaatccatacccaaaccttacccgaatgtacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggt 238  Q
    |||||||||| || |||||| |||||| |||||||||||| |||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||    
T  2189907 tacccaccccgaacccatactcaaaccctacccgaatgtagaaaggtcatatttttgtttttgttaaggaggttgataatgatatgtcatgttatttggt 2190006  T
Q  239 ttgataa 245  Q
    |||||||    
T  2190007 ttgataa 2190013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 135 - 245
Target Start/End: Complemental strand, 8031170 - 8031062
Alignment:
Q  135 tatgtacccaccccaaatccatacccaaaccttacccgaatgtacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttatt 234  Q
    |||||||||||| | || ||||||||||||| |||||||||||| || |||||| |||||||||| |||||| ||||||||||||||||| |||||||||    
T  8031170 tatgtacccacctcgaacccatacccaaaccctacccgaatgtagaa-ggtcatgtttttgtttt-gttgagggggttgataatgatatgccatgttatt 8031073  T
Q  235 tggtttgataa 245  Q
    |||||||||||    
T  8031072 tggtttgataa 8031062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 81 - 243
Target Start/End: Complemental strand, 10297542 - 10297381
Alignment:
Q  81 tttgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccg-aatgtac 179  Q
    |||| |||||| ||||||||| |||||||  ||| ||| |||||| || ||||||  ||||| ||||  || ||||||| ||||| |||||  ||||||     
T  10297542 tttgggttttccccgatttcaaaatacggggacgggacaggtaacggggatatat--gtacctaccctgaacccataccaaaaccctacccccaatgtag 10297445  T
Q  180 aaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgat 243  Q
    |||||||||| |||||||||||||||| || |||||||||||||| ||||||||||||||||||    
T  10297444 aaaggtcatacttttgtttttgttgaggggattgataatgatatgccatgttatttggtttgat 10297381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 245
Target Start/End: Original strand, 4594213 - 4594301
Alignment:
Q  155 atacccaaaccttacccgaatgtacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    ||||||||||  |||| ||||||| ||| ||| | ||||| ||||||  ||| ||||||||||||||||||||||||||||||||||||||    
T  4594213 atacccaaactctacctgaatgtagaaaagtcgtgttttt-tttttgc-gagggggttgataatgatatgtcatgttatttggtttgataa 4594301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 165
Target Start/End: Complemental strand, 17469349 - 17469257
Alignment:
Q  71 tttgattgagtttgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaacc 165  Q
    ||||| || ||||| |||||| ||||||||| || |||| || | |||||||||| ||  |||||| |||||||||||||| |||||||||||||    
T  17469349 tttgactgggtttgggttttccccgatttcaaaacacgggtatgggacgggtaacggg--tatataggtacccaccccaaacccatacccaaacc 17469257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 205
Target Start/End: Original strand, 14507280 - 14507350
Alignment:
Q  132 atatatgtacccaccccaaatccatacccaaaccttacccgaatgtacaaaggtcatatttttgtttttgttga 205  Q
    ||||||||| ||||||| || |||  ||||||||| ||||||||||| ||| ||||||||||||||||||||||    
T  14507280 atatatgtatccaccccgaaccca--cccaaacct-acccgaatgtagaaaagtcatatttttgtttttgttga 14507350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 178
Target Start/End: Original strand, 15173883 - 15173979
Alignment:
Q  80 gtttgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatgta 178  Q
    |||||||||||  ||||||||| ||||||| |||| ||||||||| ||  | ||||||||| ||||| | ||  ||||| |||||| ||||||||||||    
T  15173883 gtttgagtttttcccgatttcaaaatacgggtacgggacgggtaaatg--agatatatgtatccacctcgaactcatactcaaaccgtacccgaatgta 15173979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 163
Target Start/End: Complemental strand, 30904139 - 30904050
Alignment:
Q  71 tttgattgagtttgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaa 163  Q
    ||||| |||||||| |||| ||| ||||||| || |||| |||||||||||||| ||| | ||||| |||||||||||| | |||||||||||    
T  30904139 tttgaatgagtttgggtttcctc-gatttcaaaacacgggtacgagacgggtaa-tgg-agatataagtacccaccccatacccatacccaaa 30904050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 95 - 244
Target Start/End: Complemental strand, 70165 - 70018
Alignment:
Q  95 gatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatgtacaaaggtcatattttt 194  Q
    ||||||||||||||| |||| ||||||||||  |   |||||||||||||||||||| ||||||||||||| ||||| |||||  ||||||||| |||||    
T  70165 gatttcataatacgggtacgggacgggtaac--gaggatatatgtacccaccccaaacccatacccaaaccctacccaaatgttgaaaggtcatgttttt 70068  T
Q  195 gtttttgttgagtgggttgataatgatatgtcatgttatttggtttgata 244  Q
     ||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  70067 atttttgttgagggggttgaaaatgatatgtcatgttatttggtttgata 70018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 68 - 245
Target Start/End: Original strand, 29199876 - 29200051
Alignment:
Q  68 cgatttgattgagtttgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaacctt 167  Q
    ||||||||||| |||||  ||||| ||||||||| ||||||| |||| |||||||||| || ||||||  ||| | ||||| || ||||||||||||  |    
T  29199876 cgatttgattgggtttggattttccccgatttcaaaatacgggtacgggacgggtaacagggatatat--gtatctaccccgaacccatacccaaactct 29199973  T
Q  168 acccgaatgtacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    ||||||||||| |||||||||||||||||||||||| |  || |||||||||||||| ||||||||||||||||||||    
T  29199974 acccgaatgtagaaaggtcatatttttgtttttgttaaagggattgataatgatatgccatgttatttggtttgataa 29200051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 77 - 245
Target Start/End: Complemental strand, 18908981 - 18908816
Alignment:
Q  77 tgagtttgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatg 176  Q
    |||||||| |||||| ||||||||| |||||||||| | ||||||||||  | ||||||  ||||||||||||||  |||||||||||| ||||||||||    
T  18908981 tgagtttgggttttccccgatttcaaaatacggatatgggacgggtaacaaggatatat--gtacccaccccaaactcatacccaaaccctacccgaatg 18908884  T
Q  177 tacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    || ||||||||| ||||| ||||||||||| ||| ||||||||||||  |||||||||||| |||||||    
T  18908883 taaaaaggtcatgttttt-tttttgttgagggggctgataatgatataccatgttatttggattgataa 18908816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 88 - 242
Target Start/End: Original strand, 20610993 - 20611145
Alignment:
Q  88 tttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatgtacaaaggtca 187  Q
    |||| ||||||||| ||||||| || | |||||||||| || ||||||  ||| ||||||| || | ||||||| ||| |||| ||||||| ||||||||    
T  20610993 tttccccgatttcaaaatacgggtaggggacgggtaacgggaatatat--gtatccaccccgaaactatacccagaccctacctgaatgtagaaaggtca 20611090  T
Q  188 tatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttga 242  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||    
T  20611091 tatttttatttttgttgagggggttgataatgatatgtcatgttatttgttttga 20611145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 77 - 245
Target Start/End: Complemental strand, 9458751 - 9458587
Alignment:
Q  77 tgagtttgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatg 176  Q
    |||||||||| |||| || |||||| ||||||| |||| ||| | |||| || ||||||  ||||||||| | ||  |||||||||| | ||||||||||    
T  9458751 tgagtttgagatttccccaatttcaaaatacgggtacgggacagataacggggatatat--gtacccacctcgaactcatacccaaatcctacccgaatg 9458654  T
Q  177 tacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    |  ||| ||||||||||||||||| |  || ||||||||||||||||||||| ||||||||||||||||    
T  9458653 tgaaaaagtcatatttttgttttttt--agggggttgataatgatatgtcatcttatttggtttgataa 9458587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 190 - 245
Target Start/End: Complemental strand, 9458297 - 9458242
Alignment:
Q  190 tttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  9458297 tttttgtttttgttgaggggattgataatgatatgtcatgttatttggtttgataa 9458242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 215
Target Start/End: Original strand, 17546919 - 17547038
Alignment:
Q  94 cgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatgtacaaaggtcatatttt 193  Q
    ||||||||||||||||||||| ||  |||||| || ||| ||  ||||||||||| ||  |||| ||||||| |||||||| ||| |||| |||| ||||    
T  17546919 cgatttcataatacggatacgggatcggtaacggggatacat--gtacccaccccgaactcatatccaaaccctacccgaacgtagaaagttcatgtttt 17547016  T
Q  194 tgtttttgttgagtgggttgat 215  Q
    | ||||||||||| ||||||||    
T  17547017 tatttttgttgagggggttgat 17547038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 165
Target Start/End: Original strand, 256492 - 256578
Alignment:
Q  77 tgagtttgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaacc 165  Q
    ||||||||||||||| ||||||||| || | || ||||||||||||||  |||  ||||| |||||||||||||| |||||||||||||    
T  256492 tgagtttgagttttccccgatttcaaaacatgggtacgagacgggtaatgggc--atataggtacccaccccaaacccatacccaaacc 256578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 165
Target Start/End: Complemental strand, 32053167 - 32053090
Alignment:
Q  86 gttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaacc 165  Q
    |||||| ||||||||| || | ||||| | |||||||||| ||  ||||||||||||||||||||| |||||||||||||    
T  32053167 gttttccccgatttcaaaacatggatatgggacgggtaacggg--tatatatgtacccaccccaaacccatacccaaacc 32053090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 165
Target Start/End: Complemental strand, 27738851 - 27738774
Alignment:
Q  86 gttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaacc 165  Q
    |||||| ||||||||| || |||| || | |||||||||| |  ||||||||||||||||||| || |||||||||||||    
T  27738851 gttttccccgatttcaaaacacgggtatgggacgggtaacag--atatatatgtacccaccccgaacccatacccaaacc 27738774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 183
Target Start/End: Complemental strand, 9458937 - 9458842
Alignment:
Q  86 gttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatgtacaaag 183  Q
    |||||| ||||||| ||||||||| |||| || ||||||| || ||||||  ||||||||||| ||   ||||||||||  |||||||||||| ||||    
T  9458937 gttttccccgatttaataatacgggtacgggatgggtaacgggaatatat--gtacccaccccgaacttatacccaaactctacccgaatgtagaaag 9458842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 165
Target Start/End: Original strand, 14410858 - 14410941
Alignment:
Q  80 gtttgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaacc 165  Q
    |||||||||||| | ||||||| || |||| || | |||||||||| ||  |||||| ||||||||||| || |||||||||||||    
T  14410858 gtttgagttttcccagatttcaaaacacgggtatgggacgggtaacggg--tatataggtacccaccccgaacccatacccaaacc 14410941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 132 - 245
Target Start/End: Original strand, 55950 - 56063
Alignment:
Q  132 atatatgtacccaccccaaatccatacccaaaccttacccgaatgtacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgtt 231  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||| |||| |||||||||||||||||||||| ||||| ||||||||||  ||||||    
T  55950 atatatgtacccaccccgaatccatacccaaaccctacccgaatgtagaaagatcatatttttgtttttgttgagggggttcataatgatattccatgtt 56049  T
Q  232 atttggtttgataa 245  Q
    ||||||||||||||    
T  56050 atttggtttgataa 56063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 86 - 245
Target Start/End: Original strand, 23045001 - 23045157
Alignment:
Q  86 gttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatgtacaaaggt 185  Q
    |||||| ||||||||| ||||||| |||| || ||||||| |  | ||||||||||||||||| || ||||||| ||||| |||||||||||| ||||||    
T  23045001 gttttccccgatttcaaaatacgggtacgggatgggtaacgg--agatatatgtacccaccccgaacccataccaaaaccctacccgaatgtagaaaggt 23045098  T
Q  186 catatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    ||||||||||||||| || || ||||||||||||||||||||| ||||||||||||||||    
T  23045099 catatttttgttttt-tttagggggttgataatgatatgtcatcttatttggtttgataa 23045157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 77 - 245
Target Start/End: Complemental strand, 2681304 - 2681139
Alignment:
Q  77 tgagtttgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatg 176  Q
    |||||||| |||||| ||||||||| ||||| | |||| || ||||||  || ||||    ||| ||||||| || ||||||||||||| || |||||||    
T  2681304 tgagtttgggttttccccgatttcaaaatacaggtacgggatgggtaatggggatatga--gtatccaccccgaacccatacccaaaccctatccgaatg 2681207  T
Q  177 tacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    || |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  2681206 tagaaaggtcatatttttgtttttgatgag-gggttgataatgatatgtcatgttatttggtttgataa 2681139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 136 - 243
Target Start/End: Complemental strand, 12915504 - 12915397
Alignment:
Q  136 atgtacccaccccaaatccatacccaaaccttacccgaatgtacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttattt 235  Q
    |||||||||| || || ||||||||||||| |||||||||||| |||| |||| |||| |||||||||||| ||||||||||||||||||||||||||||    
T  12915504 atgtacccactccgaagccatacccaaaccctacccgaatgtagaaagatcatgttttcgtttttgttgagggggttgataatgatatgtcatgttattt 12915405  T
Q  236 ggtttgat 243  Q
    ||||||||    
T  12915404 ggtttgat 12915397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 77 - 245
Target Start/End: Complemental strand, 20634270 - 20634103
Alignment:
Q  77 tgagtttgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccataccc-aaaccttacccgaat 175  Q
    ||||||| ||||||| || |||| | |||||||||| |||||||||||  ||   ||||||| || |||||| || |||||||| ||||| ||||| |||    
T  20634270 tgagtttcagttttccccaattttaaaatacggatatgagacgggtaatagg--gatatatgcactcaccccgaacccatacccaaaaccctacccaaat 20634173  T
Q  176 gtacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
     || ||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  20634172 atagaaatgtcatgtttttgtttttgttgagggggttgataatgatatgtcatgttatttggtttgataa 20634103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 77 - 245
Target Start/End: Complemental strand, 20650384 - 20650217
Alignment:
Q  77 tgagtttgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccataccc-aaaccttacccgaat 175  Q
    ||||||| ||||||| || |||| | |||||||||| |||||||||||  ||   ||||||| || |||||| || |||||||| ||||| ||||| |||    
T  20650384 tgagtttcagttttccccaattttaaaatacggatatgagacgggtaatagg--gatatatgcactcaccccgaacccatacccaaaaccctacccaaat 20650287  T
Q  176 gtacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
     || ||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  20650286 atagaaatgtcatgtttttgtttttgttgagggggttgataatgatatgtcatgttatttggtttgataa 20650217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 68 - 194
Target Start/End: Original strand, 12712549 - 12712673
Alignment:
Q  68 cgatttgattgagtttgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaacctt 167  Q
    |||||||| |||||||| |||||||||||||||| ||||||| |||| ||||| |||| |  | ||||||||||||||| | || ||||||||||||| |    
T  12712549 cgatttgactgagtttgggttttctccgatttcaaaatacgggtacgggacggataacgg--agatatatgtacccacctcgaacccatacccaaaccct 12712646  T
Q  168 acccgaatgtacaaaggtcatattttt 194  Q
    ||||||||||| ||| |||||||||||    
T  12712647 acccgaatgtagaaatgtcatattttt 12712673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 68 - 194
Target Start/End: Original strand, 12773813 - 12773937
Alignment:
Q  68 cgatttgattgagtttgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaacctt 167  Q
    ||||||||||||||||| |||||||||||||||| ||||||| |||| ||||| ||||  | | ||||||||||||||| | || |||||| |||||| |    
T  12773813 cgatttgattgagtttgggttttctccgatttcaaaatacgggtacgggacggataac--ggagatatatgtacccacctcgaacccatactcaaaccct 12773910  T
Q  168 acccgaatgtacaaaggtcatattttt 194  Q
    ||||||||||| ||| |||||||||||    
T  12773911 acccgaatgtagaaatgtcatattttt 12773937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 132 - 245
Target Start/End: Complemental strand, 43523794 - 43523683
Alignment:
Q  132 atatatgtacccaccccaaatccatacccaaaccttacccgaatgtacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgtt 231  Q
    ||||||||| ||||||| ||  |||||||||||| |||||||||||| ||||||||||||||  || |||||||| ||||||||||||||||  ||||||    
T  43523794 atatatgtatccaccccgaactcatacccaaaccctacccgaatgtaaaaaggtcatatttt--ttgttgttgagggggttgataatgatataccatgtt 43523697  T
Q  232 atttggtttgataa 245  Q
    |||||| |||||||    
T  43523696 atttggattgataa 43523683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 132 - 234
Target Start/End: Original strand, 18116560 - 18116661
Alignment:
Q  132 atatatgtacccaccccaaatccatacccaaaccttacccgaatgtacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgtt 231  Q
    ||||||||| ||||||| ||  |||||||||||| |||||||||||| ||||||||||||||| || |||||||| ||||||||||||||||  ||||||    
T  18116560 atatatgtatccaccccgaactcatacccaaaccctacccgaatgtaaaaaggtcatattttt-ttgttgttgagggggttgataatgatataccatgtt 18116658  T
Q  232 att 234  Q
    |||    
T  18116659 att 18116661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 94 - 245
Target Start/End: Complemental strand, 12251041 - 12250894
Alignment:
Q  94 cgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatgtacaaaggtcatatttt 193  Q
    |||||||| ||||||| |||  |||||||||| |  | |||||||||||||| |  || ||||||||||||| |||| ||||||| |||||| || |||     
T  12251041 cgatttcaaaatacgggtaccggacgggtaacag--agatatatgtacccactctgaacccatacccaaaccctacctgaatgtagaaaggt-atgttta 12250945  T
Q  194 tgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    | ||||||||||| || |||||||||||||| ||| ||||||||||||||||    
T  12250944 t-tttttgttgaggggattgataatgatatgccatattatttggtttgataa 12250894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 190 - 245
Target Start/End: Complemental strand, 10834188 - 10834133
Alignment:
Q  190 tttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  10834188 tttttgtttttgttaagggggttgataatgatatgtcatgttatttggtttgataa 10834133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 132 - 245
Target Start/End: Complemental strand, 34259290 - 34259183
Alignment:
Q  132 atatatgtacccaccccaaatccatacccaaaccttacccgaatgtacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgtt 231  Q
    ||||||||||||||||  || | ||| ||||||| | |||||||||| ||| ||||||||||||||      ||| || |||||||||||||||||||||    
T  34259290 atatatgtacccaccctgaacctatatccaaaccctccccgaatgtagaaaagtcatatttttgtt------gaggggattgataatgatatgtcatgtt 34259197  T
Q  232 atttggtttgataa 245  Q
    ||||||||||||||    
T  34259196 atttggtttgataa 34259183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 80 - 235
Target Start/End: Complemental strand, 211449 - 211297
Alignment:
Q  80 gtttgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatgtac 179  Q
    ||||| |||||||||||||||| ||||||| ||||||||||||||| || ||||||  ||||||||||| || ||||||||||||  |||| |||||||     
T  211449 gtttgggttttctccgatttcaaaatacgggtacgagacgggtaacagggatatat--gtacccaccccgaacccatacccaaactctacctgaatgtag 211352  T
Q  180 aaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttattt 235  Q
    ||| ||||||||||||||||| || || | ||||||||||||||| ||||||||||    
T  211351 aaatgtcatatttttgttttt-tttagggagttgataatgatatgccatgttattt 211297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 87 - 245
Target Start/End: Complemental strand, 67827 - 67671
Alignment:
Q  87 ttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatgtacaaaggtc 186  Q
    ||||| ||||||| | |||||||||||| ||||| |||| || ||||||  ||||||||||| |  | ||||||||||| |||| ||||||| |||||||    
T  67827 ttttccccgattttaaaatacggatacgggacggataacggggatatat--gtacccaccccgagcctatacccaaaccctacctgaatgtagaaaggtc 67730  T
Q  187 atatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    |||||||||||||||||||| ||||| |||||||||||  |||||||||| ||||||||    
T  67729 atatttttgtttttgttgagggggttaataatgatatgctatgttatttgatttgataa 67671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 87 - 245
Target Start/End: Complemental strand, 75670 - 75514
Alignment:
Q  87 ttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatgtacaaaggtc 186  Q
    ||||| ||||||| | |||||||||||| ||||| |||| || ||||||  ||||||||||| |  | ||||||||||| |||| ||||||| |||||||    
T  75670 ttttccccgattttaaaatacggatacgggacggataacggggatatat--gtacccaccccgagcctatacccaaaccctacctgaatgtagaaaggtc 75573  T
Q  187 atatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    |||||||||||||||||||| ||||| |||||||||||  |||||||||| ||||||||    
T  75572 atatttttgtttttgttgagggggttaataatgatatgctatgttatttgatttgataa 75514  T

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Target: scaffold0184 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 77 - 245
Target Start/End: Complemental strand, 3057 - 2891
Alignment:
Q  77 tgagtttgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaaccttacccgaatg 176  Q
    |||||||| |||||| ||||||||| ||||||| |||  ||||| ||||||| ||||||  ||||||||||| || |||||| |||||| ||||||||||    
T  3057 tgagtttgggttttccccgatttcaaaatacgggtacaggacggataactgggatatat--gtacccaccccgaacccatactcaaaccctacccgaatg 2960  T
Q  177 tacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgttatttggtttgataa 245  Q
    || ||| ||||  | |||||||||||| ||  |||||||||| ||||| ||||||||||| ||||||||    
T  2959 tagaaatgtcacttgtttgtttttgtttaggaggttgataattatatgccatgttatttgatttgataa 2891  T

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Target: scaffold0182 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 132 - 245
Target Start/End: Complemental strand, 17002 - 16890
Alignment:
Q  132 atatatgtacccaccccaaatccatacccaaaccttacccgaatgtacaaaggtcatatttttgtttttgttgagtgggttgataatgatatgtcatgtt 231  Q
    ||||||||||||||||| ||  |||| ||||||| ||||||||| || ||||||||| ||||| ||||| ||||| || |||||||||||||| ||||||    
T  17002 atatatgtacccaccccgaactcatatccaaaccatacccgaatctagaaaggtcattttttt-tttttattgaggggattgataatgatatgccatgtt 16904  T
Q  232 atttggtttgataa 245  Q
    ||||||||||||||    
T  16903 atttggtttgataa 16890  T

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Target: scaffold0036 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 164
Target Start/End: Complemental strand, 33478 - 33396
Alignment:
Q  80 gtttgagttttctccgatttcataatacggatacgagacgggtaactggcatatatatgtacccaccccaaatccatacccaaac 164  Q
    ||||| |||||| ||||||||| || |||| || | |||||||||| ||  |||||||||||||||||| || ||||||||||||    
T  33478 gtttgggttttccccgatttcaaaacacgggtatgggacgggtaacggg--tatatatgtacccaccccgaacccatacccaaac 33396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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