View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14682_low_37 (Length: 239)
Name: NF14682_low_37
Description: NF14682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14682_low_37 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 32096842 - 32097062
Alignment:
| Q |
19 |
atggttcgcttgtagtatataaacgccgagatactttctgtttcagtcgatgtgggactaaaacaagcaaatataacacaacatgcaagtccttctcctt |
118 |
Q |
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| T |
32096842 |
atggttcgcttgcagtatataaacgcctagatattttctgtttcagtcgatgtgggactaaaacaagcaaatataacacaacatgcaagtccttctcctt |
32096941 |
T |
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| Q |
119 |
cacttatataacacaacatgcatcttccttctcctttatttcatttttgatttcagttcctgcgcatataagtagctacctctagtgtagccttttatcg |
218 |
Q |
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| T |
32096942 |
cacttatataacacaacatgcatcttccttcttctttattttatttttgatttcagttcctgcgcatataagtagctacctctagtgtagccttttatcg |
32097041 |
T |
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| Q |
219 |
atactcttccagacttttcat |
239 |
Q |
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| T |
32097042 |
atactcttccagacttttcat |
32097062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 32093127 - 32093188
Alignment:
| Q |
20 |
tggttcgcttgtagtatataaacgccgagatactttctgtttcagtcgatgtgggactaaaa |
81 |
Q |
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||||||||||| ||||| ||||||| || ||| |||||||||||| |||||||||||||||| |
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| T |
32093127 |
tggttcgcttgaagtatttaaacgctgaaatattttctgtttcagacgatgtgggactaaaa |
32093188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 32095044 - 32095105
Alignment:
| Q |
20 |
tggttcgcttgtagtatataaacgccgagatactttctgtttcagtcgatgtgggactaaaa |
81 |
Q |
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| T |
32095044 |
tggttcgcttgcagtatataatcgttgagatattttttgtgtcagtcgatgtgtgactaaaa |
32095105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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