View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14682_low_4 (Length: 629)
Name: NF14682_low_4
Description: NF14682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14682_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 561; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 23 - 616
Target Start/End: Complemental strand, 31219030 - 31218435
Alignment:
| Q |
23 |
ggaggccaaggagttcctaggaaaaacctcagaggaaatagaaaatgagagtttgcaaaatttccatacagatcatatcaaaggaaaaaatggagagtcc |
122 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31219030 |
ggaggccaaggagttcctaggaaaaacctcagaggaaatagaaaatgagagtttgcaaaatttccatacagatcatatcaaaggaaaaagtggagagtcc |
31218931 |
T |
|
| Q |
123 |
agtcacactgagaaagctattgattacattacaaggaagcgctcacgtgcacaaagttctaagattgaagaaggtgagcagaatgctgctgataatgaag |
222 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31218930 |
aatcacactgagaaagctattgattacattacaaggaagcgctcacgtgcacaaagttctaagattgaagaaggtgagcagaatgctgctgataatgaag |
31218831 |
T |
|
| Q |
223 |
gacattcagacggtatcacagctggtgcgcgcaaaaagaaaaggtcaacagttgctccacccaccccatttacagtggagaggcgatacaatctcaggcg |
322 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
31218830 |
gacattcagacggtatcacagctggtgcgcgcaaaaagaaaaggtcaacagttgctccacccaccccatttacaggggagaagcgatacaatctcaggcg |
31218731 |
T |
|
| Q |
323 |
ggctccacccagatacaatcttagacctagacggcatcaggcgtcagtttagtctcaggggcgtgttgtg--gagccaattgtctaactgattggcatga |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
31218730 |
ggctccacccagatacaatcttagacctagacggcatcagacgtaagtttagtctcaggggcgtgttgtggtgagccaattgtctaactgattggcatga |
31218631 |
T |
|
| Q |
421 |
ttgttaattttgttttgaaggttgcttcaaattgaaatattagttagtctttatttgtttgtttcaagtcatctaaattgattattgggaataaccttta |
520 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31218630 |
ttgttaattttgttttgaaggttgcttcaaattgaaatattagttagtctttatttgtttgtttcaagtcatctaaattgattattgggaataaccttta |
31218531 |
T |
|
| Q |
521 |
tattacaatgatacaaatattattcctggttctatattcatgaagtttggttaataattattacattttcatgagctttaataaaagtgaagtgtg |
616 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31218530 |
tattacaatgatacaaatattattcctggttctatattcatgaagtttggttaataattattacattttcatgagctttaataaaagtgaagtgtg |
31218435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 23 - 616
Target Start/End: Complemental strand, 31213275 - 31212680
Alignment:
| Q |
23 |
ggaggccaaggagttcctaggaaaaacctcagaggaaatagaaaatgagagtttgcaaaatttccatacagatcatatcaaaggaaaaaatggagagtcc |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
31213275 |
ggaggccaaggagttcctaggaaaaacctcagaggaaatagaaaatgagagtttgcaaaatttccatacagatcatatcaaaggaaaaagtggagattcc |
31213176 |
T |
|
| Q |
123 |
agtcacactgagaaagctattgattacattacaaggaagcgctcacgtgcacaaagttctaagattgaagaaggtgagcagaatgctgctgataatgaag |
222 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31213175 |
attcacactgagaaagctattgattacattacaaggaagcgctcacgtgcacaaagttctaagtttgaagaaggtgagcagaatgctgctgataatgaag |
31213076 |
T |
|
| Q |
223 |
gacattcagacggtatcacagctggtgcgcgcaaaaagaaaaggtcaacagttgctccacccaccccatttacagtggagaggcgatacaatctcaggcg |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
31213075 |
gacattcagacggtatcacagctggtgcgcgcaaaaagaaaaggtcaacagttgctccacccaccccatttacaggggagaagcgatacaatctcaggcg |
31212976 |
T |
|
| Q |
323 |
ggctccacccagatacaatcttagacctagacggcatcaggcgtcagtttagtctcaggggcgtgttgtg--gagccaattgtctaactgattggcatga |
420 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
31212975 |
ggctccacccagatacaatcttagacctagacggcatcagacgtaagtttagtctcaggggcgtgttgtggtgagccaattgtctaactgattggcatga |
31212876 |
T |
|
| Q |
421 |
ttgttaattttgttttgaaggttgcttcaaattgaaatattagttagtctttatttgtttgtttcaagtcatctaaattgattattgggaataaccttta |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31212875 |
ttgttaattttgttttgaaggttgcttcaaattgaaatattagttagtctttatttgtttgtttcaagtcatctaaattgattattgggaataaccttta |
31212776 |
T |
|
| Q |
521 |
tattacaatgatacaaatattattcctggttctatattcatgaagtttggttaataattattacattttcatgagctttaataaaagtgaagtgtg |
616 |
Q |
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| T |
31212775 |
tattacaatgatacaaatattattcctggttctatattcatgaagtttggttaataattattacattttcatgagctttaataaaagtgaagtgtg |
31212680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 23 - 616
Target Start/End: Original strand, 47896199 - 47896791
Alignment:
| Q |
23 |
ggaggccaaggagttcctaggaaaaacctcagaggaaatagaaaatgagagtttgcaaaatttccatacagatcatatcaaaggaaaaaatggagagtcc |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
47896199 |
ggaggccaaggagttcctaggaaaaacctcagaggaaatagaaaatgagagtttgcaaaatttccatacagatcatatcaaaggaaaaagtggagaatcc |
47896298 |
T |
|
| Q |
123 |
agtcacactgagaaagctattgattacattacaaggaagcgctcacgtgcacaaagttctaagattgaagaaggtgagcagaatgctgctgataatgaag |
222 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47896299 |
aatcacactgagaaagctattgattacattacaaggaagcgctcacgtgcacaaagttctaagattgaagaaggtgagcagaatgctgctgataatgaag |
47896398 |
T |
|
| Q |
223 |
gacattcagacggtatcacagctggtgcgcgcaaaaagaaaaggtcaacagttgctccacccaccccatttacagtggagaggcgatacaatctcaggcg |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
47896399 |
gacattcagacggtatcacagctggtgcgcgcaaaaagaaaaggtcaacagttgctccacccaccccatttacaggggagaagcgatacaatctcaggcg |
47896498 |
T |
|
| Q |
323 |
ggctccacccagatacaatcttagacctagacggcatcaggcgtcagtttagtctcaggggcgtgttgtg--gagccaattgtctaactgattggcatga |
420 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||| |||||||||| ||| |||||||||||||||||||||||| |
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| T |
47896499 |
ggctccacccagatacaatcttagacctagatggcatcagacgtaagtttagtctca---gcgtgttgtggtgagacaattgtctaactgattggcatga |
47896595 |
T |
|
| Q |
421 |
ttgttaattttgttttgaaggttgcttcaaattgaaatattagttagtctttatttgtttgtttcaagtcatctaaattgattattgggaataaccttta |
520 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
47896596 |
ttgttaattttgttttgaaggttgcttcaaattgaaatattagttagtctttatttgtttgtttcaagtaatctaaattgattattgggaataaacttta |
47896695 |
T |
|
| Q |
521 |
tattacaatgatacaaatattattcctggttctatattcatgaagtttggttaataattattacattttcatgagctttaataaaagtgaagtgtg |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
47896696 |
tattacaatgatacaaatattattcctggttctatattcatgaagtttggttaataattattacattttcatgagctttaattaaagtgaagtgtg |
47896791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 6e-51; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 116 - 286
Target Start/End: Complemental strand, 4958377 - 4958207
Alignment:
| Q |
116 |
agagtccagtcacactgagaaagctattgattacattacaaggaagcgctcacgtgcacaaagttctaagattgaagaaggtgagcagaatgctgctgat |
215 |
Q |
| |
|
|||||||||||||||||||||||||| || | ||| |||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||| |
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|
| T |
4958377 |
agagtccagtcacactgagaaagctactggtaacagtacaaggaagcgacaacgtgcacaaacttctaagattgctgaaggtgagcagaatgctgctgat |
4958278 |
T |
|
| Q |
216 |
aatgaaggacattcagacggtatcacagctggtgcgcgcaaaaagaaaaggtcaacagttgctccacccac |
286 |
Q |
| |
|
| |||||||||||||||| || |||||||||| |||||| ||||||||||||||||||||||||||||| |
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|
| T |
4958277 |
agtgaaggacattcagacagttcaacagctggtgggcgcaagaagaaaaggtcaacagttgctccacccac |
4958207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 438 - 515
Target Start/End: Complemental strand, 4957824 - 4957751
Alignment:
| Q |
438 |
aaggttgcttcaaattgaaatattagttagtctttatttgtttgtttcaagtcatctaaattgattattgggaataac |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||| |||||||||| ||||||||||||| ||||||||||| |
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|
| T |
4957824 |
aaggttgcttcaaattgaaatattagttag----tgtttgtatgtttcaagttatctaaattgattcttgggaataac |
4957751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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