View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14682_low_41 (Length: 236)

Name: NF14682_low_41

Description: NF14682

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF14682_low_41

[»] chr4 (2 HSPs)

Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 2)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 178; E-Value: 4e-96

Query Start/End: Original strand, 1 - 236

Target Start/End: Complemental strand, 40780851 - 40780617

Alignment:

Q	1	aacaaaaatagtagacaataccc-atttggattattttatgatttacactattttttgttaattatctagttgattgcccgattgagaaaaataatatga	99	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	40780851	aacaaaaatagtagacaataccctatttggactattttatgatttacactattttttgttaattatctagttgattgcccgattgagaaaaataatatga	40780752	T

Q	100	attttgtatgttatgaatatatagaannnnnnnnnacctattattcatgaattttggtctggcttctgtatttgtcatctacattttgtggctgtagtga	199	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	40780751	attttgtatgttatgaatatatagattttttttttacctattattcatgaattttggtctggcttctgta-ttgtcatctacattttgtggctgtagtga	40780653	T

Q	200	atctgctaattaagtagttattagtttgtgcattatt	236	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	40780652	atctgctaattaagtag-tattagtttgtgcattatt	40780617	T

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Target: chr4; HSP #2

Raw Score: 36; E-Value: 0.00000000002

Query Start/End: Original strand, 175 - 234

Target Start/End: Complemental strand, 40773276 - 40773217

Alignment:

Q	175	catctacattttgtggctgtagtgaatctgctaattaagtagttattagtttgtgcatta	234	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\| \| \|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	40773276	catctacattttgtggctgtggtgaatctgctaatgaagcagatgttagtttctgcatta	40773217	T

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