View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14682_low_42 (Length: 229)
Name: NF14682_low_42
Description: NF14682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14682_low_42 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 17)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 4783651 - 4783874
Alignment:
| Q |
1 |
gacaatgattatcctcgttacttggagaaagagtacccatctagtgtatcaagtgactttacacataacctaacatataaaaacaatgtcattccaaatt |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4783651 |
gacaatgattctcctcgttacttggagaaagagtacccatctagtgtatcaagtgactttacacataacctaacatataaaaacaatgtcattccaaatt |
4783750 |
T |
|
| Q |
101 |
acattgcaccagaagttgtgtacttaactgcaagaagttatggaatgtatgagacaaaggattacaatgtaacttggaactttgaagttgattctgcttt |
200 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4783751 |
acattgcaccagaaggtgtttacttaactgcaagaagttatggaatgtatgagacagaggattacaatgtaacttggaactttgaagttgattctgcttt |
4783850 |
T |
|
| Q |
201 |
tacttatatggtaaggttacattt |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
4783851 |
tacttatatggtaaggttacattt |
4783874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 4816080 - 4816303
Alignment:
| Q |
1 |
gacaatgattatcctcgttacttggagaaagagtacccatctagtgtatcaagtgactttacacataacctaacatataaaaacaatgtcattccaaatt |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4816080 |
gacaatgattctcctcgttacttggagaaagagtacccatctagtgtatcaagtgactttacacataacctaacatataaaaacaatgtcattccaaatt |
4816179 |
T |
|
| Q |
101 |
acattgcaccagaagttgtgtacttaactgcaagaagttatggaatgtatgagacaaaggattacaatgtaacttggaactttgaagttgattctgcttt |
200 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4816180 |
acattgcaccagaaggtgtttacttaactgcaagaagttatggaatgtatgagacagaggattacaatgtaacttggaactttgaagttgattctgcttt |
4816279 |
T |
|
| Q |
201 |
tacttatatggtaaggttacattt |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
4816280 |
tacttatatggtaaggttacattt |
4816303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 4637134 - 4636913
Alignment:
| Q |
3 |
caatgattatcctcgttacttggagaaagagtacccatctagtgtatcaagtgactttacacataacctaacatataaaaacaatgtcattccaaattac |
102 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4637134 |
caatgattttcctctttacttggagaaagagtacccatctagtgtatcaagtgactttacacataacctaacatataaaaacaatgtcattccaaattac |
4637035 |
T |
|
| Q |
103 |
attgcaccagaagttgtgtacttaactgcaagaagttatggaatgtatgagacaaaggattacaatgtaacttggaactttgaagttgattctgctttta |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4637034 |
attgcaccagaagttgtgtacttaactgcaagaagttacggaatgtatgagacaaaggattataatgtaacttggaactttgaagttgattctgctttta |
4636935 |
T |
|
| Q |
203 |
cttatatggtaaggttacattt |
224 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
4636934 |
cttatatggtaaggttacattt |
4636913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 4631206 - 4630983
Alignment:
| Q |
1 |
gacaatgattatcctcgttacttggagaaagagtacccatctagtgtatcaagtgactttacacataacctaacatataaaaacaatgtcattccaaatt |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| || ||| ||||||||||||| | ||| |||| | |||| ||| ||||||| |||| |||||| |
|
|
| T |
4631206 |
gacaatgattttcctcgttacttggagaaagaatatccacttagtgtatcaagttattttggacatcatctaaactatttaaacaataccatttcaaatt |
4631107 |
T |
|
| Q |
101 |
acattgcaccagaagttgtgtacttaactgcaagaagttatggaatgtatgagacaaaggattacaatgtaacttggaactttgaagttgattctgcttt |
200 |
Q |
| |
|
||| ||||||||||| ||| ||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
4631106 |
acactgcaccagaagctgtttacttaactgcgagaagttatggaatggatgcaacaaaggattacaatgtaacttggaattttgaagttgattcttcttt |
4631007 |
T |
|
| Q |
201 |
tacttatatggtaaggttacattt |
224 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
4631006 |
tacttatatggtaagattacattt |
4630983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 4864201 - 4863978
Alignment:
| Q |
1 |
gacaatgattatcctcgttacttggagaaagagtacccatctagtgtatcaagtgactttacacataacctaacatataaaaacaatgtcattccaaatt |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||| | || ||| || |||||||||| |||| |||| | || | ||| ||||||| ||||| ||||| |
|
|
| T |
4864201 |
gacaatgattttcctcgttacttggagaaacaatatccacaaagcatatcaagtgattttaaacatcatcttaactatgaaaacaacaccattcaaaatt |
4864102 |
T |
|
| Q |
101 |
acattgcaccagaagttgtgtacttaactgcaagaagttatggaatgtatgagacaaaggattacaatgtaacttggaactttgaagttgattctgcttt |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| ||| ||||| ||| |||| ||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
4864101 |
acactgcaccagaagttgtgtacttaactgcaagaagttacggacagtatgccacagaggagtacaatgtaacttggaattttgaagttgattctaattt |
4864002 |
T |
|
| Q |
201 |
tacttatatggtaaggttacattt |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
4864001 |
tacttatatggtaaggttacattt |
4863978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 91 - 224
Target Start/End: Original strand, 4845921 - 4846054
Alignment:
| Q |
91 |
attccaaattacattgcaccagaagttgtgtacttaactgcaagaagttatggaatgtatgagacaaaggattacaatgtaacttggaactttgaagttg |
190 |
Q |
| |
|
||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||| ||||| |||| ||||||| |||||||||||||| || ||||||| |
|
|
| T |
4845921 |
attccaaattacactgcaccagaagctgtatacttaactgcaagaagttatggaaagtatgtgacagaggattataatgtaacttggaatttcgaagttg |
4846020 |
T |
|
| Q |
191 |
attctgcttttacttatatggtaaggttacattt |
224 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
|
|
| T |
4846021 |
attctagttttacttatatggtaaggttacattt |
4846054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 4663267 - 4663047
Alignment:
| Q |
4 |
aatgattatcctcgttacttggagaaagagtacccatctagtgtatcaagtgactttacacataacctaacatataaaaacaatgtcattccaaattaca |
103 |
Q |
| |
|
||||||| ||||||||||||||||| ||| || ||| |||||||||||||| ||| | || | |||| ||| ||||||| |||||||||||||| |
|
|
| T |
4663267 |
aatgattctcctcgttacttggagatagaatatccacaaagtgtatcaagtgattttggagatcatctaaactatttaaacaataccattccaaattaca |
4663168 |
T |
|
| Q |
104 |
ttgcaccagaagttgtgtacttaactgcaagaagttatggaatgtatgagacaaaggattacaatgtaacttggaactttgaagttgattctgcttttac |
203 |
Q |
| |
|
|||||||||| ||| |||||||||||||||| |||||||| ||||| |||| ||||||| |||||||||||||| ||||| ||||||||| ||||||| |
|
|
| T |
4663167 |
ctgcaccagaaactgtatacttaactgcaagaaattatggaaagtatgtgacagaggattataatgtaacttggaattttgaggttgattcttcttttac |
4663068 |
T |
|
| Q |
204 |
ttatatggtaaggttacattt |
224 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
4663067 |
atacatggtaaggttacattt |
4663047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 4697006 - 4697229
Alignment:
| Q |
1 |
gacaatgattatcctcgttacttggagaaagagtacccatctagtgtatcaagtgactttacacataacctaacatataaaaacaatgtcattccaaatt |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||| | || ||| || |||||||||| |||| |||| | || | ||| ||||||| ||||| ||||| |
|
|
| T |
4697006 |
gacaatgattttcctcgttacttggagaaacaatatccacaaagcatatcaagtgattttaaacatcatcttaactatgaaaacaacaccattcaaaatt |
4697105 |
T |
|
| Q |
101 |
acattgcaccagaagttgtgtacttaactgcaagaagttatggaatgtatgagacaaaggattacaatgtaacttggaactttgaagttgattctgcttt |
200 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||||| |||| || |||||||| |||||| ||||||||||||||| || ||||||||| || ||| |
|
|
| T |
4697106 |
acactgcaccagaagctgtgtacttaactgcaagaagtcgtggattggatgagacagaggatttcaatgtaacttggaatttcgaagttgatgttggttt |
4697205 |
T |
|
| Q |
201 |
tacttatatggtaaggttacattt |
224 |
Q |
| |
|
|||||||||||||||||| ||||| |
|
|
| T |
4697206 |
tacttatatggtaaggttgcattt |
4697229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 81 - 224
Target Start/End: Original strand, 4711971 - 4712114
Alignment:
| Q |
81 |
aaacaatgtcattccaaattacattgcaccagaagttgtgtacttaactgcaagaagttatggaatgtatgagacaaaggattacaatgtaacttggaac |
180 |
Q |
| |
|
||||||| |||||| ||||||| ||||||||||| ||| ||||| ||||||||||||||||||||| ||| |||| ||||||| |||||||||||||| |
|
|
| T |
4711971 |
aaacaataccattcccaattacactgcaccagaagctgtatactttactgcaagaagttatggaatggatgtgacagaggattataatgtaacttggaat |
4712070 |
T |
|
| Q |
181 |
tttgaagttgattctgcttttacttatatggtaaggttacattt |
224 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4712071 |
ttcaaagttgattctagttttacttatatggtaaggttacattt |
4712114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 4653793 - 4653576
Alignment:
| Q |
7 |
gattatcctcgttacttggagaaagagtacccatctagtgtatcaagtgactttacacataacctaacatataaaaacaatgtcattccaaattacattg |
106 |
Q |
| |
|
||||||||||||||||| |||||| | || ||| |||||||||||||| ||| | || | || | |||||||||||| |||||||||||||| | |
|
|
| T |
4653793 |
gattatcctcgttacttagagaaacaatatccactaagtgtatcaagtgattttgtaaatcatctcaactataaaaacaatacaattccaaattacatcg |
4653694 |
T |
|
| Q |
107 |
caccagaagttgtgtacttaactgcaagaagttatggaatgtatgagacaaaggattacaatgtaacttggaactttgaagttgattctgcttttactta |
206 |
Q |
| |
|
||||||||| ||| ||| ||||||| ||||||||||||||| ||| ||| |||||||||||||||||||||| || |||||||| || | |||||||| |
|
|
| T |
4653693 |
caccagaagctgtatacctaactgcgagaagttatggaatgaatgtcacagaggattacaatgtaacttggaatttcgaagttgactcaacatttactta |
4653594 |
T |
|
| Q |
207 |
tatggtaaggttacattt |
224 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
4653593 |
tatggtcaggttacattt |
4653576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 91 - 224
Target Start/End: Complemental strand, 4667127 - 4666994
Alignment:
| Q |
91 |
attccaaattacattgcaccagaagttgtgtacttaactgcaagaagttatggaatgtatgagacaaaggattacaatgtaacttggaactttgaagttg |
190 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| | | || |||| ||||| || ||||| ||| |||||| |
|
|
| T |
4667127 |
attccaaattacactgcaccagaagttgtgtacttaactgcaagaagttatggaatggatgccaaagagaattataatgtgacatggaattttaaagttg |
4667028 |
T |
|
| Q |
191 |
attctgcttttacttatatggtaaggttacattt |
224 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||| |
|
|
| T |
4667027 |
attctatttttacttatatggtaaggttgcattt |
4666994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 160 - 224
Target Start/End: Complemental strand, 4643791 - 4643727
Alignment:
| Q |
160 |
gattacaatgtaacttggaactttgaagttgattctgcttttacttatatggtaaggttacattt |
224 |
Q |
| |
|
|||| ||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4643791 |
gatttcaatgtaacttggaattttgaggttgattctggttttacttatatggtaaggttacattt |
4643727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 4672790 - 4672732
Alignment:
| Q |
166 |
aatgtaacttggaactttgaagttgattctgcttttacttatatggtaaggttacattt |
224 |
Q |
| |
|
|||||||||||||| ||||| ||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
4672790 |
aatgtaacttggaattttgaggttgattcttctttcacttatatggtaaggttacattt |
4672732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 81 - 146
Target Start/End: Complemental strand, 4672902 - 4672837
Alignment:
| Q |
81 |
aaacaatgtcattccaaattacattgcaccagaagttgtgtacttaactgcaagaagttatggaat |
146 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||| ||| ||| |||||||||||||||||||||| |
|
|
| T |
4672902 |
aaacaataccattccaaattacactgcaccagaagctgtttacgtaactgcaagaagttatggaat |
4672837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 4643986 - 4643848
Alignment:
| Q |
1 |
gacaatgattatcctcgttacttggagaaagagtacccatctagtgtatcaagtgactttacacataacctaacatataaaaacaatgtcattccaaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| | || || || ||||||| ||| | | |||| | |||| ||| ||| |||| ||||||||||| |
|
|
| T |
4643986 |
gacaatgattatcctcgttacttggagaaacaatatccgctaagcgtatcaaatgattatgaacatcatctaaactatttaaaaaatgccattccaaatt |
4643887 |
T |
|
| Q |
101 |
acattgcaccagaagttgtgtacttaactgcaagaagtt |
139 |
Q |
| |
|
||| ||||||||||| ||| || |||||||||||||||| |
|
|
| T |
4643886 |
acactgcaccagaagctgtttatttaactgcaagaagtt |
4643848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 4647623 - 4647579
Alignment:
| Q |
181 |
tttgaagttgattctgcttttacttatatggtaaggttacatttg |
225 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
4647623 |
tttgaagttgattctggttttacttatatggtaaggttacttttg |
4647579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 4845828 - 4845881
Alignment:
| Q |
1 |
gacaatgattatcctcgttacttggagaaagagtacccatctagtgtatcaagt |
54 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| || ||| ||||||||||||| |
|
|
| T |
4845828 |
gacaatgattttcctcgttacttggagaaagaatatccacttagtgtatcaagt |
4845881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 18925558 - 18925781
Alignment:
| Q |
1 |
gacaatgattatcctcgttacttggagaaagagtacccatctagtgtatcaagtgactttacacataacctaacatataaaaacaatgtcattccaaatt |
100 |
Q |
| |
|
||||| |||| ||||||||||||||||||| | || ||| |||||||||| ||| ||||||||||| || | |||| ||||||| ||||||||| | |
|
|
| T |
18925558 |
gacaacgattttcctcgttacttggagaaacaatatccactaagtgtatcaaatgattttacacataatctcaactatataaacaataccattccaaact |
18925657 |
T |
|
| Q |
101 |
acattgcaccagaagttgtgtacttaactgcaagaagttatggaatgtatgagacaaaggattacaatgtaacttggaactttgaagttgattctgcttt |
200 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||| ||||||||||||||||| || |
|
|
| T |
18925658 |
acacggcaccagaagttgtatacttaactgcaagaagttatggaatggatgcgacaaaggattataatgtaacttggaattttgaagttgattctgcctt |
18925757 |
T |
|
| Q |
201 |
tacttatatggtaaggttacattt |
224 |
Q |
| |
|
||||||| ||||||| || ||||| |
|
|
| T |
18925758 |
tacttatttggtaagattgcattt |
18925781 |
T |
|
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