View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14682_low_44 (Length: 211)
Name: NF14682_low_44
Description: NF14682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14682_low_44 |
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| [»] chr6 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 159; Significance: 7e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 53 - 211
Target Start/End: Original strand, 34774458 - 34774616
Alignment:
| Q |
53 |
cctgcagaaaacaccagggaccaaactgaccacccctctccaacacaattaaaatcagcaggccaccttaaaccagtcgcaataaaaattcctttggatt |
152 |
Q |
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| T |
34774458 |
cctgcagaaaacaccagggaccaaactgaccacccctctccaacacaattaaaatcagcaggccaccttaaaccagtcgcaataaaaattcctttggatt |
34774557 |
T |
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| Q |
153 |
ccaacaccattcatagtacaaacacggcgatatatggatacgatccaaagaccaacgcc |
211 |
Q |
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| T |
34774558 |
ccaacaccattcatagtacaaacacggcgatatatggatacgatccaaagaccaacgcc |
34774616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 130; Significance: 1e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 2 - 211
Target Start/End: Original strand, 35024290 - 35024495
Alignment:
| Q |
2 |
gcagcacagaaccgaaacagccagtaggcgaaaaaaccagaagnnnnnnnncctgcagaaaacaccagggaccaaactgaccacccctctccaacacaat |
101 |
Q |
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| T |
35024290 |
gcagcagagaaccaaaacagccagtaggcgaaaaaaccagaa----aaaaacctgcagaaaacaccagggaccaaactgaccacccctctccaacataat |
35024385 |
T |
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| Q |
102 |
taaaatcagcaggccaccttaaaccagtcgcaataaaaattcctttggattccaacaccattcatagtacaaacacggcgatatatggatacgatccaaa |
201 |
Q |
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| T |
35024386 |
taaaaccagcaggttgccttaaaccagtcgcaatagagattcctttggattccaacatcattcatagtacaaacacggcgacataaggatacgatccaaa |
35024485 |
T |
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| Q |
202 |
gaccaacgcc |
211 |
Q |
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| T |
35024486 |
gaccaacgcc |
35024495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 53 - 211
Target Start/End: Original strand, 42748646 - 42748802
Alignment:
| Q |
53 |
cctgcagaaaacaccagggaccaaactgaccacccctctccaacacaattaaaatcagcaggccaccttaaaccagtcgcaataaaaattcctttggatt |
152 |
Q |
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||||||||||||| ||||||||||| |||||||||||||||| ||||| |||| | |||||| ||||||| | |||||| | | ||||||||||||| |
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| T |
42748646 |
cctgcagaaaacagcagggaccaaattgaccacccctctccagcacaa--aaaacctgcaggcttccttaaatccttcgcaaaagacattcctttggatt |
42748743 |
T |
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| Q |
153 |
ccaacaccattcatagtacaaacacggcgatatatggatacgatccaaagaccaacgcc |
211 |
Q |
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| T |
42748744 |
ccaacaccattcatagtacaaacacggcgatataagaatacgatccaaagaccaacgcc |
42748802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 176
Target Start/End: Complemental strand, 25355732 - 25355704
Alignment:
| Q |
148 |
ggattccaacaccattcatagtacaaaca |
176 |
Q |
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| T |
25355732 |
ggattccaacaccattcatagtacaaaca |
25355704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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