View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14682_low_45 (Length: 206)
Name: NF14682_low_45
Description: NF14682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14682_low_45 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 27744323 - 27744528
Alignment:
| Q |
1 |
agcttatcagtgatcctcgatttgtaggaatgcacacagaccctcgttttcgagaggctcgaaaggatgaaacaaaagtggcaattgactctcgcttcaa |
100 |
Q |
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| T |
27744323 |
agcttatcagtgatcctcgatttgtaggaatgcacacagaccctcgttttcgagaggctcgaaaggatgaaacaaaagtggcaattgactctcgcttcaa |
27744422 |
T |
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| Q |
101 |
gcacatgttcaatgacaattcttttttctcttattctgcaccaatcgacaagagaggcaggtatatagaaaacaacctcactttaaaatctgattttctt |
200 |
Q |
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| T |
27744423 |
gcacatgttcaatgacaattcttttttctcttattctgcaccaatcgacaagagaggcaggtatatagaaaacaacctcactttaaaatctgattttctt |
27744522 |
T |
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| Q |
201 |
cgccat |
206 |
Q |
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|||||| |
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| T |
27744523 |
cgccat |
27744528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 49513337 - 49513377
Alignment:
| Q |
166 |
tagaaaacaacctcactttaaaatctgattttcttcgccat |
206 |
Q |
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| T |
49513337 |
tagaaaacaacctcacttttaaatctgattttcttcgccat |
49513377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 49513269 - 49513321
Alignment:
| Q |
1 |
agcttatcagtgatcctcgatttgtaggaatgcacacagaccctcgttttcga |
53 |
Q |
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| T |
49513269 |
agcttatcaatgatcctcggtttgtaggagtgctcacagaccctctttttcga |
49513321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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