View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14682_low_6 (Length: 490)
Name: NF14682_low_6
Description: NF14682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14682_low_6 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 18 - 490
Target Start/End: Complemental strand, 32316834 - 32316361
Alignment:
| Q |
18 |
gaagaagtagttgttattgttgtgaaagaaagagtgtggatttgaaattgaatctatggtgtttgtgttttggtgcatgagaaaattgtctggtaaggga |
117 |
Q |
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| T |
32316834 |
gaagaagtagttgttattgttgtgaaagaaagagtgtggatttgaaattgaatctatggtgtttgtgttttggtgcatgagaaaattgtctggtaaggga |
32316735 |
T |
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| Q |
118 |
ataacattattaacattaacaacgttgttgttgttgtagaagttgttatcaggttcgggttgtggttcgggtttgaagaaagggagagaagaaccagcca |
217 |
Q |
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| T |
32316734 |
ataacattattaacattaacaacgttgttgttgttgtagaagttgttatcaggttcgggttgtggttcgggtttgaagaaagggagagaagaaccagcca |
32316635 |
T |
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| Q |
218 |
tggcaatagctattgcaatgtcttgttcgtggttgtgtttaggttcggagttaggtgtggaccatgaagaaggtgattcttgttgttgaggttcagtcca |
317 |
Q |
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| T |
32316634 |
tggcaatagctattgcaatgtcttgttcgtggttgtgtttaggttcggagttaggtgtggaccatgaagaaggtgattcttgttgttgaggttcagtcca |
32316535 |
T |
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| Q |
318 |
aggtatagtgagagtgttgtgaacttgttgcgatggtaacggtagcgtgtatctctccatgacagagggacaaaaaagagaaaagtgtgaagaggtt-tt |
416 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
32316534 |
aggtatagtgagagtgttgtgaacttgttgtgatggtaacggtagcgtgtatctctccatgacagagagacaaaaaagagaaaagtgtgaagaggttttt |
32316435 |
T |
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| Q |
417 |
ttgttttgttgttagaagaagatgatttgtgtgaagaatgatgatagagagaaaaagggaacgttgtgtctgtg |
490 |
Q |
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| T |
32316434 |
ttgttttgttgttagaagaagatgatttgtgtgaagaatgatgatagagagaaaaagggaacgttgtgtttgtg |
32316361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 7e-47; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 8187662 - 8187559
Alignment:
| Q |
18 |
gaagaagtagttgttattgttgtgaaagaaagagtgtggatttgaaattgaatctatggtgtttgtgttttggtgcatgagaaaattgtctggtaaggga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8187662 |
gaagaagtagttgttattgttgtgaaagaaagagtgtggatttgaaattgaatctatggtgtttgtgttttggtgcatgagaaaattgtctgataagggg |
8187563 |
T |
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| Q |
118 |
ataa |
121 |
Q |
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|||| |
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| T |
8187562 |
ataa |
8187559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 189 - 305
Target Start/End: Complemental strand, 8187542 - 8187420
Alignment:
| Q |
189 |
tttgaagaaagggagagaagaaccagccatggcaatagctattgcaatgtcttgttcgtg------gttgtgtttaggttcggagttaggtgtggaccat |
282 |
Q |
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|||||||||| ||||||| || ||||||| ||||||| ||||||||||||||||| || |||||||||||||| || |||||||||||||||| |
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| T |
8187542 |
tttgaagaaacggagagagcaatcagccataacaatagccattgcaatgtcttgttcatgcttgttgttgtgtttaggtttggcgttaggtgtggaccat |
8187443 |
T |
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| Q |
283 |
gaagaaggtgattcttgttgttg |
305 |
Q |
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|||||| |||||||||||||||| |
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| T |
8187442 |
gaagaatgtgattcttgttgttg |
8187420 |
T |
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