View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14682_low_7 (Length: 434)

Name: NF14682_low_7
Description: NF14682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14682_low_7
NF14682_low_7
[»] chr3 (6 HSPs)
chr3 (18-425)||(11006352-11006745)
chr3 (276-419)||(11015921-11016064)
chr3 (273-419)||(11024933-11025079)
chr3 (315-425)||(47452297-47452407)
chr3 (44-191)||(11025139-11025270)
chr3 (137-188)||(11016133-11016185)
[»] chr4 (27 HSPs)
chr4 (318-419)||(7813061-7813162)
chr4 (315-419)||(7822547-7822651)
chr4 (318-419)||(7800218-7800319)
chr4 (315-425)||(7904610-7904720)
chr4 (316-423)||(7907904-7908011)
chr4 (315-425)||(7770982-7771092)
chr4 (315-419)||(7238116-7238220)
chr4 (321-425)||(45372447-45372551)
chr4 (316-419)||(7774225-7774328)
chr4 (315-405)||(7789667-7789757)
chr4 (316-418)||(49044626-49044728)
chr4 (319-418)||(48862823-48862922)
chr4 (316-419)||(48902529-48902632)
chr4 (314-418)||(33134223-33134327)
chr4 (318-418)||(45366618-45366718)
chr4 (317-417)||(48156825-48156925)
chr4 (316-419)||(7877299-7877402)
chr4 (351-417)||(48735713-48735779)
chr4 (317-418)||(48170986-48171087)
chr4 (353-418)||(49048996-49049061)
chr4 (316-405)||(50668622-50668711)
chr4 (314-414)||(37827395-37827495)
chr4 (318-418)||(48898303-48898403)
chr4 (315-419)||(49041534-49041638)
chr4 (315-419)||(50251204-50251308)
chr4 (319-418)||(48148082-48148181)
chr4 (348-405)||(48891020-48891077)
[»] chr8 (6 HSPs)
chr8 (327-425)||(12199897-12199995)
chr8 (327-425)||(12444325-12444423)
chr8 (321-425)||(4032306-4032410)
chr8 (328-419)||(12194892-12194983)
chr8 (328-419)||(12439320-12439411)
chr8 (352-424)||(15348477-15348549)
[»] chr6 (1 HSPs)
chr6 (316-418)||(21015355-21015457)
[»] chr5 (4 HSPs)
chr5 (359-418)||(29712866-29712925)
chr5 (328-405)||(29687642-29687719)
chr5 (318-417)||(1812006-1812105)
chr5 (365-417)||(178647-178699)
[»] chr1 (4 HSPs)
chr1 (317-419)||(24339994-24340096)
chr1 (317-414)||(24415417-24415514)
chr1 (353-417)||(24322078-24322142)
chr1 (317-419)||(24309757-24309859)
[»] scaffold0508 (1 HSPs)
scaffold0508 (317-419)||(11842-11944)
[»] chr7 (1 HSPs)
chr7 (316-384)||(48883361-48883429)


Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 425
Target Start/End: Complemental strand, 11006745 - 11006352
Alignment:
Q  18 atttaatcatttttaatataaaagtaacatgttgggttggctttcacgcaatgtttactgcttttccctttgcaatatataaataatgttcgttgactta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11006745 atttaatcatttttaatataaaagtaacatgttgggttggctttcacgcaatgtttactgcttttccctttgcaatatataaataatgttcgttgactta 11006646  T
Q  118 aagaattgagcatcacattcatgtaggaagagtactcaacaatgaacttttgaagagtaccagagaaggattaaatatcactgagccctctcttactacc 217  Q
    |||||| || |||||||||||||||             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  11006645 aagaatggaccatcacattcatgta-------------acaatgaacttttgaagagtaccagagaaggattaaatatcactgagccctctcttactatc 11006559  T
Q  218 tcatcaccaacgtagtaatactttatctttcaca-gtcatacaaattaaattagttacaattgcagagaaggaagacagatggagatgaagaccggcctg 316  Q
    |||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  11006558 tcatcaccaacgtagtaatactttatctttcacaagtcata--aattaaattagttacaattgcagagaaggaagacagatggagacgaagaccggcctg 11006461  T
Q  317 tatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatct 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11006460 tatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatct 11006361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 276 - 419
Target Start/End: Complemental strand, 11016064 - 11015921
Alignment:
Q  276 attgcagagaaggaagacagatggagatgaagaccggcctgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttat 375  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||| || ||    
T  11016064 attgcagaggaggaagacagatggagaagaagaccggcctgtatctgcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctctcat 11015965  T
Q  376 acgtttcaagtgtgtttgtaagtcatggttaactcttatctctg 419  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||    
T  11015964 acgtttcaaatgcgtttgtaagtcattgttagctcttatctctg 11015921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 273 - 419
Target Start/End: Complemental strand, 11025079 - 11024933
Alignment:
Q  273 acaattgcagagaaggaagacagatggagatgaagaccggcctgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcact 372  Q
    ||||||||| || ||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||| ||    
T  11025079 acaattgcataggaggaagacagatggagaagaagaccgacctgtatttgcctcatgaattgatcatacaaatcatgttgaggttaccggtgaagtctct 11024980  T
Q  373 tatacgtttcaagtgtgtttgtaagtcatggttaactcttatctctg 419  Q
     ||||||||||| || |||||||||||||||||| ||||||||||||    
T  11024979 catacgtttcaaatgcgtttgtaagtcatggttagctcttatctctg 11024933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 315 - 425
Target Start/End: Complemental strand, 47452407 - 47452297
Alignment:
Q  315 tgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttat 414  Q
    ||||||| |||| ||||||||| || || |||||| ||||||||||||||||||| ||| |||| ||||||||  ||| ||||||||||||  |||||||    
T  47452407 tgtatctacctcttgaattgataatccagatcttggtgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttat 47452308  T
Q  415 ctctgctcctc 425  Q
    ||||| |||||    
T  47452307 ctctgatcctc 47452297  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 44 - 191
Target Start/End: Complemental strand, 11025270 - 11025139
Alignment:
Q  44 acatgttgggttggctttcacgcaatgtttactgcttttccctttgcaatatataaataatgttcgttgacttaaagaattgagcatcacatt-catgta 142  Q
    ||||||||| ||||||||||||||| ||||||||||||| || |||||||||    ||||||||| ||||||            |||| |||| ||||||    
T  11025270 acatgttggtttggctttcacgcaaggtttactgctttt-ccattgcaatat----ataatgttctttgact------------catcgcattccatgta 11025188  T
Q  143 ggaagagtactcaacaatgaacttttgaagagtaccagagaaggattaa 191  Q
    ||||||||| | |||||||||||| |||||||||||| |||||||||||    
T  11025187 ggaagagtattgaacaatgaacttgtgaagagtaccaaagaaggattaa 11025139  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 11016185 - 11016133
Alignment:
Q  137 catgtaggaa-gagtactcaacaatgaacttttgaagagtaccagagaaggat 188  Q
    |||||||||| ||||| |||||||||||||| |||||||||||| ||||||||    
T  11016185 catgtaggaaagagtattcaacaatgaacttgtgaagagtaccaaagaaggat 11016133  T

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Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 318 - 419
Target Start/End: Original strand, 7813061 - 7813162
Alignment:
Q  318 atctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctc 417  Q
    ||||||||||||| ||||| || | ||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||  ||||||||||    
T  7813061 atctgcctcatgatttgataatcctaatcttgttgaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctc 7813160  T
Q  418 tg 419  Q
    ||    
T  7813161 tg 7813162  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 315 - 419
Target Start/End: Original strand, 7822547 - 7822651
Alignment:
Q  315 tgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttat 414  Q
    |||||||||||||| | ||||| || | ||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||  |||||||    
T  7822547 tgtatctgcctcatcatttgataatcctaatcttgttgaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttat 7822646  T
Q  415 ctctg 419  Q
    |||||    
T  7822647 ctctg 7822651  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 318 - 419
Target Start/End: Original strand, 7800218 - 7800319
Alignment:
Q  318 atctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctc 417  Q
    ||||||||||||| ||||| || | ||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||  ||||| ||||    
T  7800218 atctgcctcatgatttgataatcctaatcttgttgaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttgtctc 7800317  T
Q  418 tg 419  Q
    ||    
T  7800318 tg 7800319  T

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Target: chr4; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 315 - 425
Target Start/End: Original strand, 7904610 - 7904720
Alignment:
Q  315 tgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttat 414  Q
    ||||||| |||| ||||||||| || ||||||||| || ||||||| |||||||| |||||||||||||| ||||||||||||| ||||||  |||||||    
T  7904610 tgtatcttcctcgtgaattgattattcaaatcttgatgtggttgcctgtgaagtctcttatacgtttcaaatgtgtttgtaagttatggttttctcttat 7904709  T
Q  415 ctctgctcctc 425  Q
    ||||| |||||    
T  7904710 ctctgatcctc 7904720  T

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Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 316 - 423
Target Start/End: Original strand, 7907904 - 7908011
Alignment:
Q  316 gtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatc 415  Q
    |||||| ||||||||||||||  | || ||| |  ||||||||||||||||||| |||| ||||||||||| |||| |||||||||||||  ||||||||    
T  7907904 gtatcttcctcatgaattgattttccagatcctactgaggttgccggtgaagtctcttacacgtttcaagtctgttcgtaagtcatggttttctcttatc 7908003  T
Q  416 tctgctcc 423  Q
    ||||||||    
T  7908004 tctgctcc 7908011  T

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Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 315 - 425
Target Start/End: Original strand, 7770982 - 7771092
Alignment:
Q  315 tgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttat 414  Q
    ||||||||||||||||| | || || |||||  || ||||||||||||||||||| |||||| ||||||| || ||||||||||| |||||  |||||||    
T  7770982 tgtatctgcctcatgaactaataatccaaattctgatgaggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttctcttat 7771081  T
Q  415 ctctgctcctc 425  Q
    ||||| |||||    
T  7771082 ctctgatcctc 7771092  T

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Target: chr4; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 315 - 419
Target Start/End: Complemental strand, 7238220 - 7238116
Alignment:
Q  315 tgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttat 414  Q
    ||||||||||||||||| | ||||| |||||  || |||||||||| |||||||| |||||  ||||||| |||||||||||||| |||||  |||||||    
T  7238220 tgtatctgcctcatgaactaatcatccaaattctgatgaggttgccagtgaagtctcttatctgtttcaaatgtgtttgtaagtcttggttttctcttat 7238121  T
Q  415 ctctg 419  Q
    |||||    
T  7238120 ctctg 7238116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 321 - 425
Target Start/End: Complemental strand, 45372551 - 45372447
Alignment:
Q  321 tgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctctgc 420  Q
    |||||||||||||||| || |||||  |  | ||||||||||||||||| |||||||||||||| |||||||||||||| |||||  || |||||||||     
T  45372551 tgcctcatgaattgatgattcaaattctactaaggttgccggtgaagtctcttatacgtttcaaatgtgtttgtaagtcttggttttctattatctctga 45372452  T
Q  421 tcctc 425  Q
    |||||    
T  45372451 tcctc 45372447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 316 - 419
Target Start/End: Complemental strand, 7774328 - 7774225
Alignment:
Q  316 gtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatc 415  Q
    |||||| |||||||||||||| || ||||||||| || || ||||||||||||| ||||| | |||||| ||||||||||||  ||||||  ||||||||    
T  7774328 gtatcttcctcatgaattgattattcaaatcttgatgcggctgccggtgaagtctcttattcatttcaaatgtgtttgtaagctatggttttctcttatc 7774229  T
Q  416 tctg 419  Q
    ||||    
T  7774228 tctg 7774225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 315 - 405
Target Start/End: Original strand, 7789667 - 7789757
Alignment:
Q  315 tgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggtt 405  Q
    ||||||||||||||||| |||| || |||||  || ||||||||||||||||||| |||||| ||||||| || ||||||||||| |||||    
T  7789667 tgtatctgcctcatgaactgataatccaaattctgatgaggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggtt 7789757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 316 - 418
Target Start/End: Complemental strand, 49044728 - 49044626
Alignment:
Q  316 gtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatc 415  Q
    ||||||||||||||| |||||||| |  ||  || |||||||||| |||| ||| ||| |||||||||||||||||||||||| ||||||  ||||||||    
T  49044728 gtatctgcctcatgacttgatcatccttattctgctgaggttgccagtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatc 49044629  T
Q  416 tct 418  Q
    |||    
T  49044628 tct 49044626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 319 - 418
Target Start/End: Original strand, 48862823 - 48862922
Alignment:
Q  319 tctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctct 418  Q
    ||||||||||||||||||||| | |||| || | ||||| ||||||||||| ||||| |||||||| || ||||| ||||| |||||  |||||||||||    
T  48862823 tctgcctcatgaattgatcatcctaatcctgctaaggttaccggtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttatctct 48862922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 316 - 419
Target Start/End: Original strand, 48902529 - 48902632
Alignment:
Q  316 gtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatc 415  Q
    |||||| ||||||||||||||||| ||||| |||  | |||||||||| ||||| || || |||||||| |||||||||||||| |||||  |||||||     
T  48902529 gtatctacctcatgaattgatcatccaaattttgcagtggttgccggtaaagtctctcattcgtttcaaatgtgtttgtaagtcttggttttctcttata 48902628  T
Q  416 tctg 419  Q
    ||||    
T  48902629 tctg 48902632  T

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Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 314 - 418
Target Start/End: Complemental strand, 33134327 - 33134223
Alignment:
Q  314 ctgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactctta 413  Q
    |||||||||||||||||||||||||| |  ||  ||||||| || ||||||||||| ||||| |||||||| || ||||||||| | || ||  ||||||    
T  33134327 ctgtatctgcctcatgaattgatcatccttattctgttgagattaccggtgaagtctcttattcgtttcaaatgcgtttgtaagccttgattttctctta 33134228  T
Q  414 tctct 418  Q
    |||||    
T  33134227 tctct 33134223  T

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Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 318 - 418
Target Start/End: Complemental strand, 45366718 - 45366618
Alignment:
Q  318 atctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctc 417  Q
    |||| |||||||||||||| || |||||| |  | ||||| || |||||||| ||||||||||||||||| ||||||||||  |||||  ||||||||||    
T  45366718 atcttcctcatgaattgatgatccaaatcctactaaggttaccagtgaagtctcttatacgtttcaagtgcgtttgtaagtattggttttctcttatctc 45366619  T
Q  418 t 418  Q
    |    
T  45366618 t 45366618  T

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Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 317 - 417
Target Start/End: Complemental strand, 48156925 - 48156825
Alignment:
Q  317 tatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatct 416  Q
    |||||||| | ||||||||| || |||||| | ||  |||| ||||||||||| ||| ||||||||||||| ||||||||||| |||||  |||||||||    
T  48156925 tatctgccacttgaattgataattcaaatccttttatggttaccggtgaagtctcttctacgtttcaagtgcgtttgtaagtcttggttttctcttatct 48156826  T
Q  417 c 417  Q
    |    
T  48156825 c 48156825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 316 - 419
Target Start/End: Original strand, 7877299 - 7877402
Alignment:
Q  316 gtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatc 415  Q
    |||||| |||||||||||||| || |||||| || |  |||||| ||||||||| |||||||||||||| ||  ||||||||  ||||||  ||||||||    
T  7877299 gtatcttcctcatgaattgattatccaaatcctgatttggttgctggtgaagtctcttatacgtttcaaatgcatttgtaagctatggttttctcttatc 7877398  T
Q  416 tctg 419  Q
    ||||    
T  7877399 tctg 7877402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 351 - 417
Target Start/End: Complemental strand, 48735779 - 48735713
Alignment:
Q  351 tgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctc 417  Q
    ||||||| ||||||||||| ||||| |||||||| |||||||||||||| |||||  ||||||||||    
T  48735779 tgaggttaccggtgaagtctcttattcgtttcaaatgtgtttgtaagtcttggttttctcttatctc 48735713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 317 - 418
Target Start/End: Complemental strand, 48171087 - 48170986
Alignment:
Q  317 tatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatct 416  Q
    |||||| ||| |||||||||  | |||||  || |||||||  |||||||||| ||| |||||||||| |||||||||||||| |||||  |||||||||    
T  48171087 tatctggctcttgaattgatagttcaaattctgctgaggttatcggtgaagtctcttctacgtttcaaatgtgtttgtaagtcttggtttgctcttatct 48170988  T
Q  417 ct 418  Q
    ||    
T  48170987 ct 48170986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 353 - 418
Target Start/End: Complemental strand, 49049061 - 49048996
Alignment:
Q  353 aggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctct 418  Q
    ||||||| ||||| ||| ||| |||||||||||||||||||||||| ||||||  |||||||||||    
T  49049061 aggttgctggtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatctct 49048996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 405
Target Start/End: Original strand, 50668622 - 50668711
Alignment:
Q  316 gtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggtt 405  Q
    |||||||| | | ||||||||||| ||||| ||| |||||||||| ||||| |  ||||||||||||||||| |||||||| || |||||    
T  50668622 gtatctgcattacgaattgatcattcaaattttggtgaggttgcccgtgaaatatcttatacgtttcaagtgcgtttgtaaatcttggtt 50668711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 414
Target Start/End: Complemental strand, 37827495 - 37827395
Alignment:
Q  314 ctgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactctta 413  Q
    |||||||| |||||  | ||||||||  |||||||  |||||||| | |||||||| |||||| |||| |  || |||||||||||||||||||||||||    
T  37827495 ctgtatctacctcacaacttgatcatcgaaatcttactgaggttgtcagtgaagtctcttataagttttacatgcgtttgtaagtcatggttaactctta 37827396  T
Q  414 t 414  Q
    |    
T  37827395 t 37827395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 418
Target Start/End: Original strand, 48898303 - 48898403
Alignment:
Q  318 atctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctc 417  Q
    |||| |||||||||||| |||| |||||  || ||||  | || |||||||| |||| |||||||||||||||||||||||| |||||  | ||||||||    
T  48898303 atcttcctcatgaattggtcattcaaattctgctgagtctacctgtgaagtctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctc 48898402  T
Q  418 t 418  Q
    |    
T  48898403 t 48898403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 419
Target Start/End: Complemental strand, 49041638 - 49041534
Alignment:
Q  315 tgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttat 414  Q
    |||||||| |||||||||||||||| | |||  |  |||| ||||| |||||||| |||||  ||||||| || ||||| ||||| |||||  |||||||    
T  49041638 tgtatctgtctcatgaattgatcatcctaattctaatgagattgccagtgaagtctcttatttgtttcaaatgcgtttgcaagtcttggttttctcttat 49041539  T
Q  415 ctctg 419  Q
    |||||    
T  49041538 ctctg 49041534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 419
Target Start/End: Complemental strand, 50251308 - 50251204
Alignment:
Q  315 tgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttat 414  Q
    ||||||||||||| ||||||||||  ||||| ||  | |||||||| |||||| | |||||||  || ||||| |||| |||||| |||||  |||||||    
T  50251308 tgtatctgcctcacgaattgatcactcaaattttagttaggttgccagtgaaggctcttatacaattaaagtgggtttctaagtcttggttttctcttat 50251209  T
Q  415 ctctg 419  Q
    |||||    
T  50251208 ctctg 50251204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 418
Target Start/End: Complemental strand, 48148181 - 48148082
Alignment:
Q  319 tctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctct 418  Q
    ||||||| ||||||||||  | |||||| | |  ||||| || |||||||| ||||| |||||||| ||||| |||||||| |||||  |||||||||||    
T  48148181 tctgcctgatgaattgatagttcaaatcctttcaaggttaccagtgaagtctcttattcgtttcaaatgtgtctgtaagtcttggttttctcttatctct 48148082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 405
Target Start/End: Original strand, 48891020 - 48891077
Alignment:
Q  348 tgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggtt 405  Q
    ||||||||||  |||| ||||| |||||||||||||| || ||||||||||| |||||    
T  48891020 tgttgaggttatcggtaaagtctcttatacgtttcaaatgcgtttgtaagtcttggtt 48891077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 327 - 425
Target Start/End: Original strand, 12199897 - 12199995
Alignment:
Q  327 atgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctctgctcctc 425  Q
    ||||||| ||||| |||||| || ||||||||||||||||||| ||| || ||||||| ||||||||||||||||||||  |||||||||||| |||||    
T  12199897 atgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctc 12199995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 327 - 425
Target Start/End: Original strand, 12444325 - 12444423
Alignment:
Q  327 atgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctctgctcctc 425  Q
    ||||||| ||||| |||||| || ||||||||||||||||||| ||| || ||||||| ||||||||||||||||||||  |||||||||||| |||||    
T  12444325 atgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctc 12444423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 321 - 425
Target Start/End: Complemental strand, 4032410 - 4032306
Alignment:
Q  321 tgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctctgc 420  Q
    ||||||||||||||||||| ||||||||  ||||  | ||  ||||||| |||||||||||||||||||||||||| || |||||||||||||| ||||     
T  4032410 tgcctcatgaattgatcatccaaatcttactgagactaccaatgaagtctcttatacgtttcaagtgtgtttgtaaatcttggttaactcttatatctga 4032311  T
Q  421 tcctc 425  Q
    |||||    
T  4032310 tcctc 4032306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 328 - 419
Target Start/End: Original strand, 12194892 - 12194983
Alignment:
Q  328 tgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctctg 419  Q
    |||||| ||||| |||||| || ||||||||||||||||||| ||| || ||||||| ||  ||||||||||||||||| ||||||||||||    
T  12194892 tgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctg 12194983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 328 - 419
Target Start/End: Original strand, 12439320 - 12439411
Alignment:
Q  328 tgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctctg 419  Q
    |||||| ||||| |||||| || ||||||||||||||||||| ||| || ||||||| ||  ||||||||||||||||| ||||||||||||    
T  12439320 tgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctg 12439411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 352 - 424
Target Start/End: Original strand, 15348477 - 15348549
Alignment:
Q  352 gaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctctgctcct 424  Q
    |||||| ||||||||||| |||||||||||||| || ||||||||||| |||||  |||||||||||| ||||    
T  15348477 gaggttaccggtgaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatcct 15348549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 316 - 418
Target Start/End: Original strand, 21015355 - 21015457
Alignment:
Q  316 gtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatc 415  Q
    |||||||||||| ||||||||||| | ||| ||||||||||| ||||| | ||| ||| |||||||||||||||||||||||| || |||  ||||||||    
T  21015355 gtatctgcctcaagaattgatcatcctaattttgttgaggttaccggtcatgtctcttctacgtttcaagtgtgtttgtaagttattgttttctcttatc 21015454  T
Q  416 tct 418  Q
    |||    
T  21015455 tct 21015457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 359 - 418
Target Start/End: Complemental strand, 29712925 - 29712866
Alignment:
Q  359 ccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctct 418  Q
    ||||||||||| ||||| ||||||||||| |||||||||| ||||||  |||||||||||    
T  29712925 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 29712866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 328 - 405
Target Start/End: Original strand, 29687642 - 29687719
Alignment:
Q  328 tgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggtt 405  Q
    |||||||||||| |||||| |  | | ||| || |||||||| |||||||| |||||||||||||||||||| |||||    
T  29687642 tgaattgatcattcaaatccttctaaagttaccagtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggtt 29687719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 417
Target Start/End: Original strand, 1812006 - 1812105
Alignment:
Q  318 atctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctc 417  Q
    |||| ||||| ||| ||||| | ||||| ||||||||||| || |||||||  || ||||||| ||| || |||||||||| ||||||  ||||||||||    
T  1812006 atcttcctcaggaactgatcgttcaaattttgttgaggttaccagtgaagtatctcatacgttccaaatgggtttgtaagttatggttttctcttatctc 1812105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 417
Target Start/End: Original strand, 178647 - 178699
Alignment:
Q  365 aagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctc 417  Q
    ||||| ||||| |||||||| |||||||||||||| |||||| |||| |||||    
T  178647 aagtctcttattcgtttcaaatgtgtttgtaagtcttggttatctctcatctc 178699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 419
Target Start/End: Original strand, 24339994 - 24340096
Alignment:
Q  317 tatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatct 416  Q
    ||||| ||| ||||||||||||   |||||||  | ||||| ||||| ||||| ||||| |||||||| | ||||||||||||||||||  | |||||||    
T  24339994 tatcttcctgatgaattgatcaccaaaatcttagtaaggttaccggttaagtctcttattcgtttcaaatctgtttgtaagtcatggttttcacttatct 24340093  T
Q  417 ctg 419  Q
    |||    
T  24340094 ctg 24340096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 317 - 414
Target Start/End: Original strand, 24415417 - 24415514
Alignment:
Q  317 tatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttat 414  Q
    ||||||||| ||||||||||||  |||||| | ||||| || ||||| ||||| ||||| |||||||| || ||| ||||||| |||||  |||||||    
T  24415417 tatctgcctgatgaattgatcacccaaatcctattgagattaccggttaagtctcttattcgtttcaaatgcgttcgtaagtcttggttttctcttat 24415514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 353 - 417
Target Start/End: Original strand, 24322078 - 24322142
Alignment:
Q  353 aggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctc 417  Q
    ||||||| ||||||||| ||||| |||||||| || ||||||||||| |||||  ||||||||||    
T  24322078 aggttgctggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctc 24322142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 419
Target Start/End: Original strand, 24309757 - 24309859
Alignment:
Q  317 tatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatct 416  Q
    ||||||||| ||||||||||||   |||||||  | || || ||||| ||||| ||||| |||||||| |  |||||||||| ||||||  |||||||||    
T  24309757 tatctgcctgatgaattgatcaccaaaatcttagtaagattaccggttaagtctcttattcgtttcaaatccgtttgtaagttatggttttctcttatct 24309856  T
Q  417 ctg 419  Q
    |||    
T  24309857 ctg 24309859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 419
Target Start/End: Original strand, 11842 - 11944
Alignment:
Q  317 tatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatct 416  Q
    ||||| ||| ||||||||||||   |||||||  | ||||| ||| | ||||| ||||| |||||||| |  |||||||||||||||||  |||||||||    
T  11842 tatcttcctgatgaattgatcaccaaaatcttagtaaggttaccgattaagtctcttatccgtttcaaatccgtttgtaagtcatggttttctcttatct 11941  T
Q  417 ctg 419  Q
    |||    
T  11942 ctg 11944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 384
Target Start/End: Original strand, 48883361 - 48883429
Alignment:
Q  316 gtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaa 384  Q
    ||||||||||| |||||| ||||| ||||| ||| ||||||| |  |||||||| ||| ||||||||||    
T  48883361 gtatctgcctcttgaattaatcattcaaattttggtgaggttacatgtgaagtctcttttacgtttcaa 48883429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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