View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14683_high_1 (Length: 682)

Name: NF14683_high_1
Description: NF14683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14683_high_1
NF14683_high_1
[»] chr2 (1 HSPs)
chr2 (19-665)||(1247872-1248519)


Alignment Details
Target: chr2 (Bit Score: 575; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 19 - 665
Target Start/End: Original strand, 1247872 - 1248519
Alignment:
Q  19 attctatcaatagaaattaatcaatcatgccttccaaataaataagatgatgaaaaatgaaataaataatgttgcaatactaatagatttgtatcatcaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1247872 attctatcaatagaaattaatcaatcatgccttccaaataaataagatgatgaaaaatgaaataaataatgttgcaatactaatagatttgtatcatcaa 1247971  T
Q  119 aggaaattgctagttatggcgagagataacaataccgaaaatttcacgaatgactattttatacttagtcannnnnnnaactatatggtgttggatattc 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  1247972 aggaaattgctagttatggcgagagataacaataccgaaaatttcacgaatgactattttatacttagtcatttttttaactatatggtgttggatattc 1248071  T
Q  219 aatatcggatttatgtgcatgaatatgattgcttatataagaatacatacctcactgagcaaggtgcctagagacttatcgtcggaggccttaacggtct 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1248072 aatatcggatttatgtgcatgaatatgattgcttatataagaatacatacctcactgagcaaggtgcctagagacttatcgtcagaggccttaacggtct 1248171  T
Q  319 cctcagctttggtctccttggcttgctgttcaaccttaacctcctcggtgacaggctcggggacagggactggagcgtcactttcgtcggtcctagggtt 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1248172 cctcagctttggtctccttggcttgctgttcaaccttaacctcctcggtgacaggctcagggacagggactggagcgtcactttcgtcggtcctagggtt 1248271  T
Q  419 gccagcacagttgcccattttcaatgattattattaataaatgtacaatgtgggagaacaagccaagtaatttggtcttgttcttgatttgttctccctt 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1248272 gccagcacagttgcccattttcaatgattattattaataaatgtacaatgtgggagaacaagccaagtaagttggtcttgttcttgatttgttctccctt 1248371  T
Q  519 tgaatctgagcaaagaatgataaaaggatggttaattctctacatgagttttatataggggtgcattgg-nnnnnnnngggtggtgaagttcaatatgtg 617  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||    
T  1248372 tgaatctgagcaaagaatgataaaaggatggttaattctctacatgagttttatataggggtgcattggtttttttttgggtggtgaagttcaatatgtg 1248471  T
Q  618 gcgtggaaagttttaaggaatttaacggttgtttttagtttaatttct 665  Q
    ||  ||||||||||||||||||||||||||||||||||||||||||||    
T  1248472 gctcggaaagttttaaggaatttaacggttgtttttagtttaatttct 1248519  T

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