View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14683_high_15 (Length: 205)

Name: NF14683_high_15

Description: NF14683

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF14683_high_15

[»] chr2 (2 HSPs)

Target: chr2 (Bit Score: 94; Significance: 4e-46; HSPs: 2)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 94; E-Value: 4e-46

Query Start/End: Original strand, 18 - 186

Target Start/End: Original strand, 12484252 - 12484420

Alignment:

Q	18	actcctagttcctaatagcattgttcttctattaaaaaatagcacaaagggacttagatccaatggcactatgcagtatat-ggaatacttgcttcttca	116	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|
T	12484252	actcctaggtcctaacagcattgttcttctattaaaaaatagcacaaagggacctagatccagtggcactatgcagtgtatgggaatgtttgcttcttca	12484351	T

Q	117	aaggggaaaccaatgcaactacaatattatctaatggagttgaggttatttatagattctctatggtgat	186	Q
		\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	12484352	aatggg-caccaatgcaactacgatattatgtgatggagtagaagttatttatagtttctctatggtgat	12484420	T

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Target: chr2; HSP #2

Raw Score: 54; E-Value: 3e-22

Query Start/End: Original strand, 16 - 69

Target Start/End: Original strand, 12513564 - 12513617

Alignment:

Q	16	atactcctagttcctaatagcattgttcttctattaaaaaatagcacaaaggga	69	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	12513564	atactcctagttcctaatagcattgttcttctattaaaaaatagcacaaaggga	12513617	T

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