View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14683_low_10 (Length: 266)

Name: NF14683_low_10
Description: NF14683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14683_low_10
NF14683_low_10
[»] chr4 (10 HSPs)
chr4 (1-250)||(2711332-2711581)
chr4 (16-215)||(20651422-20651640)
chr4 (17-156)||(19533925-19534070)
chr4 (32-91)||(48336654-48336713)
chr4 (13-123)||(4701073-4701185)
chr4 (58-145)||(41790456-41790545)
chr4 (56-156)||(42074859-42074964)
chr4 (48-81)||(51736999-51737032)
chr4 (39-91)||(10181160-10181212)
chr4 (155-191)||(55760981-55761017)
[»] chr3 (11 HSPs)
chr3 (13-81)||(22755510-22755578)
chr3 (15-154)||(30681882-30682024)
chr3 (150-230)||(22755851-22755931)
chr3 (150-231)||(21272017-21272098)
chr3 (150-230)||(30680946-30681026)
chr3 (131-195)||(21894245-21894311)
chr3 (16-81)||(30080720-30080785)
chr3 (150-230)||(28389086-28389166)
chr3 (148-199)||(39557430-39557481)
chr3 (150-208)||(5852495-5852553)
chr3 (150-202)||(45516888-45516940)
[»] chr8 (7 HSPs)
chr8 (13-80)||(17495896-17495963)
chr8 (16-91)||(29802700-29802775)
chr8 (17-91)||(11335399-11335473)
chr8 (150-215)||(27562922-27562987)
chr8 (39-91)||(25173705-25173757)
chr8 (150-206)||(29359544-29359600)
chr8 (39-91)||(35584147-35584199)
[»] chr1 (5 HSPs)
chr1 (16-124)||(26345348-26345458)
chr1 (17-81)||(15443431-15443495)
chr1 (13-154)||(40711010-40711156)
chr1 (161-206)||(507524-507569)
chr1 (150-190)||(8980839-8980879)
[»] chr7 (4 HSPs)
chr7 (13-78)||(23816598-23816663)
chr7 (150-230)||(37238218-37238298)
chr7 (150-201)||(11455297-11455348)
chr7 (108-156)||(28601573-28601622)
[»] scaffold0204 (1 HSPs)
scaffold0204 (32-91)||(24176-24235)
[»] chr2 (6 HSPs)
chr2 (105-154)||(13398903-13398953)
chr2 (105-190)||(33227489-33227576)
chr2 (150-195)||(19637918-19637963)
chr2 (150-195)||(19836511-19836556)
chr2 (150-195)||(41465243-41465288)
chr2 (150-190)||(8924597-8924637)
[»] scaffold0034 (1 HSPs)
scaffold0034 (150-197)||(25089-25136)
[»] chr5 (1 HSPs)
chr5 (150-211)||(26440492-26440553)
[»] chr6 (1 HSPs)
chr6 (105-156)||(3410498-3410550)


Alignment Details
Target: chr4 (Bit Score: 156; Significance: 6e-83; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 2711581 - 2711332
Alignment:
Q  1 ctccctcccttctctcattttaaatgacctaatttaaaaatgcgcactattcacttaatatattttgaccatatttttctatcaatataca--gataaat 98  Q
    ||||||||| ||||||||||||||| ||||||| ||||||   ||||||||||| ||||||||||||||||||||||||||| ||||||||  |||||||    
T  2711581 ctccctcccctctctcattttaaataacctaatataaaaaaatgcactattcacataatatattttgaccatatttttctattaatatacaaagataaat 2711482  T
Q  99 tgtaatatataaaatgttggatttgtttcgtaaatatttttaaaatatcaatttttt-aatagattattaaaaacatttaagatcaaaattgtacattaa 197  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||| |||    
T  2711481 tgtaatatataaaatgttggatttgtttcgtgaatagttttaaaatatcaatttttttaatagatttttaaaaatatttaagatcaaaattgtacactaa 2711382  T
Q  198 catatgtgatagaatcaattgtgtcacataataatataaggaagatatgaatg 250  Q
    |||| |||||||| |||||||||||||||   ||||||||||| |||||||||    
T  2711381 catacgtgatagagtcaattgtgtcacat---aatataaggaaaatatgaatg 2711332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 215
Target Start/End: Original strand, 20651422 - 20651640
Alignment:
Q  16 cattttaaatgacctaatttaaaaatgcgcactattcacttaatatattttgaccata-tttttctatcaatatacaga--taaattgtaatatataaaa 112  Q
    |||||||||||| |||||||||||||| | ||||||||  ||||||||||||| |||| ||||| ||| |||||| | |  |||| | ||||||| || |    
T  20651422 cattttaaatgatctaatttaaaaatgtgaactattcatataatatattttgatcatattttttttattaatatataaatttaaaatataatataaaaga 20651521  T
Q  113 tgttg---gatttgtttcg-taaatatttttaaaatatcaatttttta------------atagattattaaaaacatttaagatcaaaattgtacatta 196  Q
    |||||   ||||||| ||| |||||||||||||||||| || ||||||            ||||||||||||||| ||||||| |||||||||| ||||     
T  20651522 tgttgttagatttgtctcgataaatatttttaaaatattaaatttttataattttttctgatagattattaaaaatatttaagttcaaaattgtgcattg 20651621  T
Q  197 acatatgtgatagaatcaa 215  Q
    ||||| |||| ||| ||||    
T  20651622 acatacgtgacagagtcaa 20651640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 19534070 - 19533925
Alignment:
Q  17 attttaaatgacctaatttaaaaatgcgcactattcacttaatatattttgaccatatttttctatcaatatac--agataaattgtaatatataa---a 111  Q
    ||||||||||||||||||| |||||  ||| ||||||  ||| ||| |||||| |||||||||||  |||||||  ||| |||||||   ||||||   |    
T  19534070 attttaaatgacctaatttgaaaatatgcattattcatataacatactttgacaatatttttctactaatatacaaagacaaattgtggcatataagata 19533971  T
Q  112 atgttggatttgtttcg-taaatatttttaaaatatcaatttttta 156  Q
     |||||||||||| ||| | ||||||||||||||||||| ||||||    
T  19533970 ttgttggatttgtctcgatgaatatttttaaaatatcaaattttta 19533925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 48336713 - 48336654
Alignment:
Q  32 atttaaaaatgcgcactattcacttaatatattttgaccatatttttctatcaatataca 91  Q
    ||||||||||| |||||||| |||||| ||||||||||| ||||||||||  ||||||||    
T  48336713 atttaaaaatgtgcactattgacttaacatattttgaccgtatttttctactaatataca 48336654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 4701185 - 4701073
Alignment:
Q  13 tctcattttaaatgacctaatttaaaaatgcgcactattcacttaatatattttgaccatatttttctatcaatatac--agataaattgtaatatataa 110  Q
    |||||||||||||||  || ||||||||||  || ||||||  ||| || |||||| ||||||||||||| |||||||  |||||||  ||| |||||||    
T  4701185 tctcattttaaatgatttactttaaaaatgtacattattcatataacatgttttgatcatatttttctattaatatacaaagataaacggtagtatataa 4701086  T
Q  111 aatgttggatttg 123  Q
     || |||||||||    
T  4701085 gatattggatttg 4701073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 145
Target Start/End: Complemental strand, 41790545 - 41790456
Alignment:
Q  58 atatattttgaccatatttttctatcaatatac--agataaattgtaatatataaaatgttggatttgtttcg-taaatatttttaaaata 145  Q
    |||||||||||| ||||||||||| ||| ||||  ||||||||  | |||||||| ||||||||||||| ||| |||||||||| ||||||    
T  41790545 atatattttgactatatttttctaccaacatacaaagataaataat-atatataagatgttggatttgtctcgataaatattttcaaaata 41790456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 156
Target Start/End: Original strand, 42074859 - 42074964
Alignment:
Q  56 taatatattttgaccatatttttctatcaatataca-gataaattgtaatatataaa---atgttggatttgtttcg-taaatatttttaaaatatcaat 150  Q
    ||||| |||||||| ||||||||||   |||||| | || ||||| ||| |||||||   |||||| |||||||||| | ||||||||||||||||||||    
T  42074859 taatacattttgactatatttttcttctaatatataagacaaattataacatataaattaatgttgaatttgtttcgatgaatatttttaaaatatcaat 42074958  T
Q  151 ttttta 156  Q
    ||||||    
T  42074959 ttttta 42074964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 51736999 - 51737032
Alignment:
Q  48 tattcacttaatatattttgaccatatttttcta 81  Q
    |||| |||||||||||||||||||||||||||||    
T  51736999 tattgacttaatatattttgaccatatttttcta 51737032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 10181212 - 10181160
Alignment:
Q  39 aatgcgcactattcacttaatatattttgaccatatttttctatcaatataca 91  Q
    |||| |||||||| |||||| |||||||||||| |||||||||  ||||||||    
T  10181212 aatgtgcactattgacttaacatattttgaccacatttttctactaatataca 10181160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 191
Target Start/End: Complemental strand, 55761017 - 55760981
Alignment:
Q  155 taatagattattaaaaacatttaagatcaaaattgta 191  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  55761017 taatatattattaaaaatatttaagatcaaaattgta 55760981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 22755510 - 22755578
Alignment:
Q  13 tctcattttaaatgacctaatttaaaaatgcgcactattcacttaatatattttgaccatatttttcta 81  Q
    ||||||||||||||||||||||| |||||| ||||||||||| ||| || |||||||||||||||||||    
T  22755510 tctcattttaaatgacctaatttcaaaatgtgcactattcacataacatgttttgaccatatttttcta 22755578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 154
Target Start/End: Complemental strand, 30682024 - 30681882
Alignment:
Q  15 tcattttaaatgacctaatttaaaaatgcgcactattcacttaatatattttgaccatatttttctatcaatatac--agataaattgtaatatataaaa 112  Q
    ||||||||||||||||||||| |||| | | ||||||||| ||| |||  |||| ||||||||||||  |||||||  ||||||||| ||| |||||| |    
T  30682024 tcattttaaatgacctaatttgaaaacgtgtactattcacataacataccttgatcatatttttctaataatatacaaagataaattataacatataaga 30681925  T
Q  113 tgttggatttgtttcg-taaatatttttaaaatatcaattttt 154  Q
    ||||| |||||||||| | |||||||| |||| ||||| ||||    
T  30681924 tgttgaatttgtttcgattaatattttcaaaacatcaaatttt 30681882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 230
Target Start/End: Original strand, 22755851 - 22755931
Alignment:
Q  150 ttttttaatagattattaaaaacatttaagatcaaaattgtacattaacatatgtgatagaatcaattgtgtcacataata 230  Q
    |||| ||||||||| || || | ||||||||||||||||||  ||| |||||||||| |||||||||| ||||||||||||    
T  22755851 ttttctaatagattgttcaagatatttaagatcaaaattgtgtattgacatatgtgacagaatcaattatgtcacataata 22755931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 231
Target Start/End: Original strand, 21272017 - 21272098
Alignment:
Q  150 ttttttaatagattattaaaaacatttaagatcaaaattgtacattaacatatgtgatagaatcaattgtgtcacataataa 231  Q
    ||||||||||||||| |||||  |||||||||||||||||| ||||   || ||||||| | ||||||||||||| ||||||    
T  21272017 ttttttaatagattagtaaaattatttaagatcaaaattgttcattggtatgtgtgataaattcaattgtgtcacttaataa 21272098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 230
Target Start/End: Complemental strand, 30681026 - 30680946
Alignment:
Q  150 ttttttaatagattattaaaaacatttaagatcaaaattgtacattaacatatgtgatagaatcaattgtgtcacataata 230  Q
    |||| ||||||||||||| | | ||||||||||||||||||||||| | |||||||   || ||||| |||||||||||||    
T  30681026 ttttctaatagattattagagatatttaagatcaaaattgtacattgatatatgtggctgagtcaatagtgtcacataata 30680946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 195
Target Start/End: Complemental strand, 21894311 - 21894245
Alignment:
Q  131 aatatttttaaaatatcaatttttta--atagattattaaaaacatttaagatcaaaattgtacatt 195  Q
    |||||||| |||||| ||| ||||||  ||||||||||||| | |||||||||||||||||||||||    
T  21894311 aatattttcaaaataccaaatttttataatagattattaaagatatttaagatcaaaattgtacatt 21894245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 30080785 - 30080720
Alignment:
Q  16 cattttaaatgacctaatttaaaaatgcgcactattcacttaatatattttgaccatatttttcta 81  Q
    |||||||||||||||||||| |  ||| ||||||||||| ||| ||| ||||| ||||||||||||    
T  30080785 cattttaaatgacctaatttgagtatgtgcactattcacgtaacatactttgatcatatttttcta 30080720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 230
Target Start/End: Complemental strand, 28389166 - 28389086
Alignment:
Q  150 ttttttaatagattattaaaaacatttaagatcaaaattgtacattaacatatgtgatagaatcaattgtgtcacataata 230  Q
    |||| ||||||||||||||| | ||||||||| ||| |||| |||| |||||||| ||  | |||||||||||| ||||||    
T  28389166 ttttctaatagattattaaagatatttaagattaaagttgtgcattgacatatgtaatgaagtcaattgtgtcaaataata 28389086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 199
Target Start/End: Complemental strand, 39557481 - 39557430
Alignment:
Q  148 aattttttaatagattattaaaaacatttaagatcaaaattgtacattaaca 199  Q
    |||||||||||| ||||||||| | |||||| ||||||||| ||||||||||    
T  39557481 aattttttaatatattattaaagatatttaaaatcaaaattatacattaaca 39557430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 5852553 - 5852495
Alignment:
Q  150 ttttttaatagattattaaaaacatttaagatcaaaattgtacattaacatatgtgata 208  Q
    |||| ||||||||||||||| | |||||||||||||||| || ||| ||||| ||||||    
T  5852553 ttttctaatagattattaaagatatttaagatcaaaattataaattgacatacgtgata 5852495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 45516940 - 45516888
Alignment:
Q  150 ttttttaatagattattaaaaacatttaagatcaaaattgtacattaacatat 202  Q
    |||| ||||| |||||| |||| |||||||||||||||| |||||||| ||||    
T  45516940 ttttctaataaattatttaaaatatttaagatcaaaattatacattaatatat 45516888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 17495896 - 17495963
Alignment:
Q  13 tctcattttaaatgacctaatttaaaaatgcgcactattcacttaatatattttgaccatatttttct 80  Q
    |||| ||||||||||| ||||||||||||| |||||||| |  ||| |||||||||||||||||||||    
T  17495896 tctcgttttaaatgacttaatttaaaaatgtgcactattaatataacatattttgaccatatttttct 17495963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 29802775 - 29802700
Alignment:
Q  16 cattttaaatgacctaatttaaaaatgcgcactattcacttaatatattttgaccatatttttctatcaatataca 91  Q
    ||||||| |||||||||||| |||||| | | ||||||  |||||| |||||||||||||||||||  ||||||||    
T  29802775 cattttatatgacctaatttgaaaatgtgtattattcatataatatgttttgaccatatttttctactaatataca 29802700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 11335473 - 11335399
Alignment:
Q  17 attttaaatgacctaatttaaaaatgcgcactattcacttaatatattttgaccatatttttctatcaatataca 91  Q
    ||||||||||| ||| |||||||||| | | ||||||| ||| ||| ||||||||||||||||||  ||||||||    
T  11335473 attttaaatgatctattttaaaaatgtgtattattcacataacatactttgaccatatttttctactaatataca 11335399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 27562987 - 27562922
Alignment:
Q  150 ttttttaatagattattaaaaacatttaagatcaaaattgtacattaacatatgtgatagaatcaa 215  Q
    |||||||||||| ||||||| | ||||||| |||||||||| |||| ||||| |||||||| ||||    
T  27562987 ttttttaatagaatattaaagatatttaagttcaaaattgtgcatttacatacgtgatagagtcaa 27562922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 25173705 - 25173757
Alignment:
Q  39 aatgcgcactattcacttaatatattttgaccatatttttctatcaatataca 91  Q
    |||| |||||||| ||||||||||||||||| || ||||||||| ||||||||    
T  25173705 aatgtgcactattgacttaatatattttgacaatgtttttctattaatataca 25173757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 29359600 - 29359544
Alignment:
Q  150 ttttttaatagattattaaaaacatttaagatcaaaattgtacattaacatatgtga 206  Q
    |||| |||||||||| ||||   |||||||||||||||||| |||||| ||||||||    
T  29359600 ttttctaatagattagtaaagttatttaagatcaaaattgtgcattaatatatgtga 29359544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 35584199 - 35584147
Alignment:
Q  39 aatgcgcactattcacttaatatattttgaccatatttttctatcaatataca 91  Q
    |||| ||| |||| || ||||||||||||| ||||||||||||| ||||||||    
T  35584199 aatgtgcattattgacctaatatattttgatcatatttttctattaatataca 35584147  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 26345458 - 26345348
Alignment:
Q  16 cattttaaatgacctaatttaaaaatgcgcactattcacttaatatattttgaccatatttttctatcaatatac--agataaattgtaatatataaaat 113  Q
    ||||||||||||| |||||| ||| ||  ||||||||||  || ||| ||||||||||| ||||||  |||||||  ||||||||| ||  |||||||||    
T  26345458 cattttaaatgacataatttgaaattgttcactattcacacaacatactttgaccatatatttctactaatatacaaagataaattatatcatataaaat 26345359  T
Q  114 gttggatttgt 124  Q
    |||||||||||    
T  26345358 gttggatttgt 26345348  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 15443495 - 15443431
Alignment:
Q  17 attttaaatgacctaatttaaaaatgcgcactattcacttaatatattttgaccatatttttcta 81  Q
    ||||||||||||||| |||||||||| ||| ||||||| ||| || |||||| ||||||||||||    
T  15443495 attttaaatgacctattttaaaaatgtgcattattcacgtaacatgttttgatcatatttttcta 15443431  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 154
Target Start/End: Complemental strand, 40711156 - 40711010
Alignment:
Q  13 tctcattttaaatgacctaatttaaaaatgcgcactattcacttaatatattttgaccatatttttct----atcaatatacagataaattgtaatatat 108  Q
    |||| ||||||||||| |||||| |||||||| || |||||| ||| || |||||| | |||||||||    ||  ||||| ||| ||| | ||| ||||    
T  40711156 tctctttttaaatgacataatttgaaaatgcgtacgattcacataacatgttttgatcttatttttctactaatatatataaagacaaaatataacatat 40711057  T
Q  109 aaaatgttggatttgtttcg-taaatatttttaaaatatcaattttt 154  Q
    || |||||||||| |||||| | |||||||||| |||||||| ||||    
T  40711056 aagatgttggattcgtttcgatgaatatttttagaatatcaaatttt 40711010  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 507524 - 507569
Alignment:
Q  161 attattaaaaacatttaagatcaaaattgtacattaacatatgtga 206  Q
    ||||||||| | ||||||||||||||||||||||| ||||| ||||    
T  507524 attattaaagatatttaagatcaaaattgtacattgacatacgtga 507569  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 190
Target Start/End: Original strand, 8980839 - 8980879
Alignment:
Q  150 ttttttaatagattattaaaaacatttaagatcaaaattgt 190  Q
    |||| ||||||||||||||||| ||||||| ||||||||||    
T  8980839 ttttctaatagattattaaaaatatttaagttcaaaattgt 8980879  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 23816598 - 23816663
Alignment:
Q  13 tctcattttaaatgacctaatttaaaaatgcgcactattcacttaatatattttgaccatattttt 78  Q
    |||||||||||||||| || |||||||||| | | ||||||| |||||||||||||| ||||||||    
T  23816598 tctcattttaaatgacatactttaaaaatgtgtattattcacataatatattttgacaatattttt 23816663  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 230
Target Start/End: Original strand, 37238218 - 37238298
Alignment:
Q  150 ttttttaatagattattaaaaacatttaagatcaaaattgtacattaacatatgtgatagaatcaattgtgtcacataata 230  Q
    ||||| |||||||||||| ||| ||||||||| |||||| |  |||||||||||||| ||| |||| |||||||| |||||    
T  37238218 tttttaaatagattattacaaatatttaagattaaaattatgtattaacatatgtgacagagtcaactgtgtcacgtaata 37238298  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 11455297 - 11455348
Alignment:
Q  150 ttttttaatagattattaaaaacatttaagatcaaaattgtacattaacata 201  Q
    ||||| |||||||||||||| | ||| |||||||||||| ||||||||||||    
T  11455297 tttttaaatagattattaaacatattaaagatcaaaattatacattaacata 11455348  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 156
Target Start/End: Complemental strand, 28601622 - 28601573
Alignment:
Q  108 taaaatgttggatttgtttcg-taaatatttttaaaatatcaatttttta 156  Q
    ||||||||| ||||||| ||| | ||||||||||||||||||||||||||    
T  28601622 taaaatgtttgatttgtctcgatgaatatttttaaaatatcaatttttta 28601573  T

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Target: scaffold0204 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 24235 - 24176
Alignment:
Q  32 atttaaaaatgcgcactattcacttaatatattttgaccatatttttctatcaatataca 91  Q
    ||||||||||| |||||||| |||||| ||||||||||| ||||||||||  ||||||||    
T  24235 atttaaaaatgtgcactattgacttaacatattttgaccgtatttttctactaatataca 24176  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 154
Target Start/End: Complemental strand, 13398953 - 13398903
Alignment:
Q  105 atataaaatgttggatttgtttcg-taaatatttttaaaatatcaattttt 154  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||| ||||    
T  13398953 atataaaatgttggatttgtctcggtaaatatttttaaaatatcaaatttt 13398903  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 190
Target Start/End: Complemental strand, 33227576 - 33227489
Alignment:
Q  105 atataaaatgttggatttgtttcgtaaa-tatttttaaaatatcaatttttt-aatagattattaaaaacatttaagatcaaaattgt 190  Q
    |||||| ||||||||||||| ||| ||| |||| |||||||||||||||||| ||||||| |||||| |  || || |||||||||||    
T  33227576 atataagatgttggatttgtctcgaaaaatattattaaaatatcaattttttgaatagataattaaagatgttaaatatcaaaattgt 33227489  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 19637918 - 19637963
Alignment:
Q  150 ttttttaatagattattaaaaacatttaagatcaaaattgtacatt 195  Q
    |||||||||| |||||| |||| |||||||||||||||| ||||||    
T  19637918 ttttttaataaattatttaaaatatttaagatcaaaattatacatt 19637963  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 19836511 - 19836556
Alignment:
Q  150 ttttttaatagattattaaaaacatttaagatcaaaattgtacatt 195  Q
    |||||||||| |||||| |||| |||||||||||||||| ||||||    
T  19836511 ttttttaataaattatttaaaatatttaagatcaaaattatacatt 19836556  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 41465243 - 41465288
Alignment:
Q  150 ttttttaatagattattaaaaacatttaagatcaaaattgtacatt 195  Q
    |||| ||||||||||||||||||| ||||| |||||||||| ||||    
T  41465243 ttttctaatagattattaaaaacacttaagttcaaaattgtgcatt 41465288  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 8924637 - 8924597
Alignment:
Q  150 ttttttaatagattattaaaaacatttaagatcaaaattgt 190  Q
    |||| ||||||||||||||| | ||||||||||||||||||    
T  8924637 ttttctaatagattattaaagatatttaagatcaaaattgt 8924597  T

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Target: scaffold0034 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 197
Target Start/End: Complemental strand, 25136 - 25089
Alignment:
Q  150 ttttttaatagattattaaaaacatttaagatcaaaattgtacattaa 197  Q
    |||| ||||||||||||| | | |||||||||||||||||||||||||    
T  25136 ttttctaatagattattagagatatttaagatcaaaattgtacattaa 25089  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 26440553 - 26440492
Alignment:
Q  150 ttttttaatagattattaaaaacatttaagatcaaaattgtacattaacatatgtgatagaa 211  Q
    ||||||||||||| || ||||| ||||||| ||||| ||||||||| ||||| |||| ||||    
T  26440553 ttttttaatagataataaaaaatatttaagttcaaagttgtacattgacatacgtgacagaa 26440492  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 156
Target Start/End: Original strand, 3410498 - 3410550
Alignment:
Q  105 atataaaatgttggatttgtttcg-taaatatttttaaaatatcaatttttta 156  Q
    |||||| ||||||||||| ||| | ||||||||||||||||||||| ||||||    
T  3410498 atataagatgttggatttattttgataaatatttttaaaatatcaacttttta 3410550  T

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