View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14683_low_12 (Length: 251)
Name: NF14683_low_12
Description: NF14683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14683_low_12 |
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| [»] scaffold0511 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 22760760 - 22761003
Alignment:
| Q |
1 |
tccacaggaatcaagtatcataaaccatttatcaagtttttcatgtatttcctttctttcagctcctgaatgtaatttgctgaattttgtgtttttctaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22760760 |
tccacaggaatcaagtatcataaaccatttatcaagtttttcatgtatttcctttctttcagctcctgaatgtaatttgctgaattttgtgtttttctaa |
22760859 |
T |
|
| Q |
101 |
acgtaatgcaagaccgcagcccgaccactaaattgaagattttgcaattctaggaaacagaaaaaattaaattttctcacaattaaatcatttaatcata |
200 |
Q |
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|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
22760860 |
acgtaacgcaagaccgcagcccggccactaaattgaagattttgcaattctaggaaacagaaaaaattaaagtttctaacaattaaatcatttaatcata |
22760959 |
T |
|
| Q |
201 |
tttgacatctttgtcaagaaaagtataaatctcatattgttcga |
244 |
Q |
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|||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
22760960 |
tttgacatctttgtcaagaaaagtataaatctcacattcttcga |
22761003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 1662 - 1418
Alignment:
| Q |
1 |
tccacaggaatcaagtatcataaaccatttatcaagtttttcatgtatttcctttctttcagctcctgaatgtaatttgctgaa-ttttgtgtttttcta |
99 |
Q |
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|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||| |||||||| |
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| T |
1662 |
tccacatgaatcaagtatcataaatcatttatcaagtttttcatgtatttcctttcattcagctcctgaatgtaatttgttgaatttttgcgtttttctg |
1563 |
T |
|
| Q |
100 |
aacgtaatgcaagaccgcagcccgaccactaaattgaagattttgcaattctaggaaacagaaaaaattaaattttctcacaattaaat-catttaatca |
198 |
Q |
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||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
1562 |
aacgtaacgcaagaccgcaacccgaccactaaattgaagattttgcaattctagg-aacagaaaaaattaaagtttctcacaattaaatccatttaatca |
1464 |
T |
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| Q |
199 |
tatttgacatctttgtcaagaaaagtataaatctcatattgttcga |
244 |
Q |
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||||||||||||||||||||||||||||| |||||| ||| ||||| |
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| T |
1463 |
tatttgacatctttgtcaagaaaagtatatatctcacattcttcga |
1418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 18317678 - 18317434
Alignment:
| Q |
1 |
tccacaggaatcaagtatcataaaccatttatcaagtttttcatgtatttcctttctttcagctcctgaatgtaatttgctgaa-ttttgtgtttttcta |
99 |
Q |
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|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||| |||||||| |
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| T |
18317678 |
tccacatgaatcaagtatcataaatcatttatcaagtttttcatgtatttcctttcattcagctcctgaatgtaatttgttgaatttttgcgtttttctg |
18317579 |
T |
|
| Q |
100 |
aacgtaatgcaagaccgcagcccgaccactaaattgaagattttgcaattctaggaaacagaaaaaattaaattttctcacaattaaat-catttaatca |
198 |
Q |
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||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
18317578 |
aacgtaacgcaagaccgcaacccgaccactaaattgaagattttgcaattctagg-aacagaaaaaattaaagtttctcacaattaaatccatttaatca |
18317480 |
T |
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| Q |
199 |
tatttgacatctttgtcaagaaaagtataaatctcatattgttcga |
244 |
Q |
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||||||||||||||||||||||||||||| |||||| ||| ||||| |
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| T |
18317479 |
tatttgacatctttgtcaagaaaagtatatatctcacattcttcga |
18317434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 42300500 - 42300747
Alignment:
| Q |
1 |
tccacaggaatcaagtatcataaaccatttatcaagtttttcatgtatttcctttctttcagctcctgaatgtaatttgctgaa-ttttgtgtttttcta |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||| |
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| T |
42300500 |
tccacaggaatcaagtatcataaaccatttatcaagtttttcatgtatttcctttctttcagctcatgaacgtaatttgctgaatttttgcgtttttctg |
42300599 |
T |
|
| Q |
100 |
aacgtaatgcaagaccgcagcccgaccactaaattgaagattttgcaattctaggaaacagaa--aaaattaaattttctcacaattaaat-catttaat |
196 |
Q |
| |
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||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||| || ||||||||| |||||||||||||||| ||||||| |
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| T |
42300600 |
aacgtaatgcaagactgcagcccgaccactgaatggaagattttgcaattctaggaaacaaaaagaaaattaaagtttctcacaattaaatccatttaag |
42300699 |
T |
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| Q |
197 |
catatttgacatctttgtcaagaaaagtataaatctcatattgttcga |
244 |
Q |
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||||||||||||||||||||||||||||||||| |||| ||| ||||| |
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| T |
42300700 |
catatttgacatctttgtcaagaaaagtataaacctcacattcttcga |
42300747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 106 - 234
Target Start/End: Complemental strand, 56537212 - 56537083
Alignment:
| Q |
106 |
atgcaagaccgcagcccgaccactaaattgaagattttgcaattctaggaaacagaaaaaattaaattttctcacaattaaat-catttaatcatatttg |
204 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
56537212 |
atgcaagaccgcagcccgaccactgaatggaagattttgcagttctaggaaacagaaaaaattaaagtttctcacaattaaatccatttaatcatatttg |
56537113 |
T |
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| Q |
205 |
acatctttgtcaagaaaagtataaatctca |
234 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
56537112 |
acatctttgtcaagaaaagtataaatctca |
56537083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 2085551 - 2085617
Alignment:
| Q |
1 |
tccacaggaatcaagtatcataaaccatttatcaagtttttcatgtatttcctttctttcagctcct |
67 |
Q |
| |
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|||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2085551 |
tccacacgaatcaagtctcataaaccatttatcaagtttttcatgtctttcctttctttcagctcct |
2085617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 106 - 233
Target Start/End: Complemental strand, 42465561 - 42465432
Alignment:
| Q |
106 |
atgcaagaccgcagcccgaccactaaattgaagattttgcaattctaggaaacagaaaaaattaaat-tttctcacaattaaat-catttaatcatattt |
203 |
Q |
| |
|
|||||||| |||||||||||||| ||| |||||||||||| ||||||| ||| ||||||| | | |||||| ||||||||| ||| |||| |||||| |
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| T |
42465561 |
atgcaagatcgcagcccgaccacagaatggaagattttgcagttctagggaaccgaaaaaaatgcacgtttctcccaattaaattcatctaattatattt |
42465462 |
T |
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| Q |
204 |
gacatctttgtcaagaaaagtataaatctc |
233 |
Q |
| |
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|||||| ||||||||||||||||||||||| |
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| T |
42465461 |
gacatcattgtcaagaaaagtataaatctc |
42465432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 48213492 - 48213553
Alignment:
| Q |
174 |
ttctcacaattaaatc-atttaatcatatttgacatctttgtcaagaaaagtataaatctca |
234 |
Q |
| |
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|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48213492 |
ttctcacagttaaatccatttaatcatatttgacatctttgtcaagaaaagtataaatctca |
48213553 |
T |
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Back To:
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