View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14683_low_13 (Length: 250)
Name: NF14683_low_13
Description: NF14683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14683_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 22760675 - 22760443
Alignment:
| Q |
1 |
tcttaccactttaggtttaggatccatatgagcattaatctgtcatgctgcattgctttcttggaccatgacagtacttatggaggcaatccttagtcct |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
22760675 |
tcttaccactttaggtttaggatccatatgagcattaatctgtcatgctgcattggtttcttggaccatgccagtacttacggaggcaatccttagtcct |
22760576 |
T |
|
| Q |
101 |
ttttggtctataaaagttagaacttattaaaccacctttcacatacatgtactgttagctaggtcatttatggtcatgcttgtggttgtgctaacatata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
22760575 |
ttttggtctataaaagttagaacttattaaaccacctttcacatacatgtactgttagctaggtcatttatggtcatgcttgtggttgtggtaacatata |
22760476 |
T |
|
| Q |
201 |
tcatgcttacatatcaaaccattatatttacat |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
22760475 |
tcatgcttacatatcaaaccattatatttacat |
22760443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 48408745 - 48408565
Alignment:
| Q |
1 |
tcttaccactttaggtttaggatccatatgagcattaatctgtcatgctgcattgctttcttggaccatgacagtacttatggaggcaatccttagtcct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||| |||| ||| |||||| ||||||||||| |
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| T |
48408745 |
tcttaccactttaggtttaggatccatatgagccttaatctgtcatactgcattggtttcttggaccatgtcagtccttgccgaggcattccttagtcct |
48408646 |
T |
|
| Q |
101 |
ttttggtctataaaagttagaacttattaaaccacctttcacatacatgtactgttagctaggtcatttatggtcatgctt |
181 |
Q |
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| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
48408645 |
tcttggtctttaaaagttagaacttattaaaccacctttcacatacatgtactgttagctaggtcatttatagtcatgctt |
48408565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 48408206 - 48408026
Alignment:
| Q |
1 |
tcttaccactttaggtttaggatccatatgagcattaatctgtcatgctgcattgctttcttggaccatgacagtacttatggaggcaatccttagtcct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||| |||| ||| |||||| ||||||||||| |
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| T |
48408206 |
tcttaccactttaggtttaggatccatatgagccttaatctgtcatactgcattggtttcttggaccatgtcagtccttgccgaggcattccttagtcct |
48408107 |
T |
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| Q |
101 |
ttttggtctataaaagttagaacttattaaaccacctttcacatacatgtactgttagctaggtcatttatggtcatgctt |
181 |
Q |
| |
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| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
48408106 |
tcttggtctttaaaagttagaacttattaaaccacctttcacatgcatgtactgttagctaggtcatttatagtcatgctt |
48408026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 233
Target Start/End: Complemental strand, 48408033 - 48408001
Alignment:
| Q |
201 |
tcatgcttacatatcaaaccattatatttacat |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
48408033 |
tcatgcttacatatcaaaccattatatttacat |
48408001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 233
Target Start/End: Complemental strand, 48408572 - 48408540
Alignment:
| Q |
201 |
tcatgcttacatatcaaaccattatatttacat |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
48408572 |
tcatgcttacatatcaaaccattatatttacat |
48408540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 2 - 233
Target Start/End: Complemental strand, 42300414 - 42300183
Alignment:
| Q |
2 |
cttaccactttaggtttaggatccatatgagcattaatctgtcatgctgcattgctttcttggaccatgacagtacttatggaggcaatccttagtcctt |
101 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||| |||||||||||| |||||||| |||||||||||||| |||||||| ||||||||||||||| ||| |
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| T |
42300414 |
cttaccactttaagtttaggatccttatgagccttaatctgtcatactgcattggtttcttggaccatgtcagtacttgctgaggcaatccttagttctt |
42300315 |
T |
|
| Q |
102 |
tttggtctataaaagttagaacttattaaaccacctttcacatacatgtactgttagctaggtcatttatggtcatgcttgtggttgtgctaacatatat |
201 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42300314 |
tttggtctttaaaagttaaaacttattaaaccacctttcacatacatgtactgttagctaggtcatttatggtcatgcttgtggttgtgctaacatatat |
42300215 |
T |
|
| Q |
202 |
catgcttacatatcaaaccattatatttacat |
233 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |
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|
| T |
42300214 |
catgcttgcatatcaaaccattatatttacat |
42300183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 18322903 - 18323034
Alignment:
| Q |
20 |
ggatccatatgagcattaatctgtcatgctgcattgctttcttggaccatgacagtacttatggaggcaatccttagtcctttttggtctataaaagtta |
119 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
18322903 |
ggatccatatgagcattaatctgacatgctgcattcgtttcttggaccatgacagcacttgtcgaggcaatccttagtcctttttggtctataaaagtta |
18323002 |
T |
|
| Q |
120 |
gaacttattaaaccacctttcacatacatgta |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
18323003 |
gaacttattaaaccacctttcacatacatgta |
18323034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 16 - 233
Target Start/End: Original strand, 42826924 - 42827139
Alignment:
| Q |
16 |
tttaggatccatatgagcattaatctgtcatgctgcattgctttcttggaccatgacagtacttatggaggcaatccttagtcctttttggtct----at |
111 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | |||||| |||||||||||||| |||| ||||||||||| ||||||| || |
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| T |
42826924 |
tttaggatccatatgagccttaatctgtcatacggcattggtttcttggaccatgtcagt---------------ccttagtccttcttggtctttaaat |
42827008 |
T |
|
| Q |
112 |
aaaagttagaacttattaaaccacctttcacat---------acatgtactgttagctaggtcatttatggtcatgcttgtggttgtgctaacatatatc |
202 |
Q |
| |
|
|||||||||||||||||||| | | |||||||| |||| |||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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|
| T |
42827009 |
aaaagttagaacttattaaatcccttttcacatttttttactacatatactgttagctaggtcatttatggtcatgcaggtggttgtgccaacatatatc |
42827108 |
T |
|
| Q |
203 |
atgcttacatatcaaaccattatatttacat |
233 |
Q |
| |
|
||||||||||||||||||||| |||||||| |
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|
| T |
42827109 |
atgcttacatatcaaaccatttgatttacat |
42827139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 28941990 - 28941938
Alignment:
| Q |
1 |
tcttaccactttaggtttaggatccatatgagcattaatctgtcatgctgcat |
53 |
Q |
| |
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||||||||||||||||||||||||||||||| | |||||||||||| |||||| |
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| T |
28941990 |
tcttaccactttaggtttaggatccatatgaaccttaatctgtcatactgcat |
28941938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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