View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14683_low_16 (Length: 246)
Name: NF14683_low_16
Description: NF14683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14683_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 1027730 - 1027944
Alignment:
| Q |
9 |
aatatcctacttatgctggatccattaacgatttacatagatcttcaaaaccatatcctagttattctgaatatgatccagcaaattggtgctgcaatat |
108 |
Q |
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| T |
1027730 |
aatatcctacttatgttggatccattaacgatttacatagatcttcaaaaccatatcctagttatcctgaatatcatccagcaaattggtgctgcaatat |
1027829 |
T |
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| Q |
109 |
tgtcattgcactttgttgtaattcatagtctaaagcatagcatgatgtatcgcaaaaataataagaattaaaaattcaactacatcatctcacaaagaaa |
208 |
Q |
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| T |
1027830 |
tgtcattgcactttgttgtaattcatagtctaaagcaaagcatgatgtatcgcaaaaataataagaattaaaaattcaactacatcatctcacaaagaaa |
1027929 |
T |
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| Q |
209 |
tgaataaaactttag |
223 |
Q |
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| T |
1027930 |
tgaataaaactttag |
1027944 |
T |
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Back To:
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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Original strand, 1025525 - 1025563
Alignment:
| Q |
155 |
gtatcgcaaaaataataagaattaaaaattcaactacat |
193 |
Q |
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| T |
1025525 |
gtatcgcaaaaataatcagaattaaaaattcacctacat |
1025563 |
T |
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