View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14683_low_18 (Length: 236)
Name: NF14683_low_18
Description: NF14683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14683_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 127 - 216
Target Start/End: Original strand, 28182608 - 28182697
Alignment:
| Q |
127 |
gggtatggtgctgaagcgagaaacggaggcagaggacaggagtggctcgtcgtcgttgtagtttgggagcttcgaccacgtcgttgtttt |
216 |
Q |
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| T |
28182608 |
gggtatggtgctgaagcgagaaacggaggcagaggacaggagtggctcgtcgtcgttgtagtttggaagcttcgacaacgtcgttgtttt |
28182697 |
T |
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Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 28182482 - 28182556
Alignment:
| Q |
1 |
tagagcagtttctggtagaaaaaatgcttcaaatgtttttgttgaagaaacatctaagccttgaaattcaacagg |
75 |
Q |
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| T |
28182482 |
tagagcagtttctggtagaaaaaacgcttcaaatgtttttgttgaagaaacatctaagccttgaaattcaacagg |
28182556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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