View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14683_low_3 (Length: 536)
Name: NF14683_low_3
Description: NF14683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14683_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 11 - 530
Target Start/End: Complemental strand, 48014572 - 48014052
Alignment:
| Q |
11 |
gagatgaatccaatataaaagttgagtggatagccagagggtcctaattcggctcagagcgatgcattgtggttacattgtgcatccatgatgactcgag |
110 |
Q |
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| T |
48014572 |
gagatgaatccaatataaaagttgagtggatagccagagggtcctaattcggctcagagcgatacattgtggttacattgtgcatccatgatgactcgag |
48014473 |
T |
|
| Q |
111 |
catcactgtgcagattggaccatgttgtcttgttgggtgaggccatgaattagttcaaaacacttaaatatgtgagatgtttttattgagccactttggt |
210 |
Q |
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| T |
48014472 |
catcattgtgcatattggaccatgttgtcttgttgggtgaggccatgaattagttcaaaacacttaaatatgtgagatgtttttattgagccactttgat |
48014373 |
T |
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| Q |
211 |
aatnnnnnnnnttaggcgagttcgcattcatagattgacttatatcaggatttgtcggaacactcaacaagtgacaacaaatgtatttacaaattgctca |
310 |
Q |
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||| ||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48014372 |
aataaaaaagtttaggcgagttggcattcatagattgacatatatcaggatttgtcttaacactcaacaagtgacaacaaatgtatttacaaatttctca |
48014273 |
T |
|
| Q |
311 |
ctatagaagtcattatcctgactattgtagttgaatgcacagtcttacgagacacaagtaaatttcttttcaatgaaatcaaccatcattgacacttcta |
410 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
48014272 |
ctatagaagtcattatcctgattattgtagttgaatgcacagtcttacaagacacgagtaaatttcttatcaatgaaatcaaccatcattgacacttcta |
48014173 |
T |
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| Q |
411 |
ttgagccactaaaattctaaag-nnnnnnnnnttatgctctacatttttcttcaagatcacattaaatcttaattattannnnnnnaactcaacgcgtta |
509 |
Q |
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||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
48014172 |
ttgagccactaaaattccaaagaaaaaaaaaattatgctctacatttttcttcaagatcacattaaatcttaattattatttttttaactcaacgcgtta |
48014073 |
T |
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| Q |
510 |
taaaatcatctgtgtatgttt |
530 |
Q |
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| T |
48014072 |
taaaatcatctgtgtatgttt |
48014052 |
T |
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