View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14683_low_4 (Length: 435)
Name: NF14683_low_4
Description: NF14683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14683_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 5776829 - 5776913
Alignment:
| Q |
1 |
atgcatctgattgctgatccgggtttccatgttcaacaacctcagccaaattctccaccaactatatccacaacaagaaatcttc |
85 |
Q |
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| T |
5776829 |
atgcatctgattgctgatccgggtttccatgttcaacaacctcagccaaattctccaccaactatatccacaacaagaaatcttc |
5776913 |
T |
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Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 5776960 - 5777025
Alignment:
| Q |
132 |
gggtttttgaaggggttaacatgcatttaagagatgaaagtgagaagcgagtgattgatgaagatt |
197 |
Q |
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| T |
5776960 |
gggtttttgaaggggttaacatacatttaagagatgaaagtgagaagcgagtgattgatgaagatt |
5777025 |
T |
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