View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14683_low_5 (Length: 373)

Name: NF14683_low_5
Description: NF14683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14683_low_5
NF14683_low_5
[»] chr8 (5 HSPs)
chr8 (1-263)||(20243389-20243639)
chr8 (1-263)||(20249522-20249772)
chr8 (313-355)||(20243298-20243340)
chr8 (313-355)||(20249821-20249863)
chr8 (195-239)||(12295058-12295102)
[»] chr7 (4 HSPs)
chr7 (1-263)||(44339713-44339963)
chr7 (313-355)||(44339621-44339663)
chr7 (194-258)||(18889936-18890000)
chr7 (177-259)||(9944212-9944294)
[»] chr5 (1 HSPs)
chr5 (181-259)||(19952097-19952175)
[»] chr3 (4 HSPs)
chr3 (175-241)||(46815747-46815813)
chr3 (177-230)||(36545970-36546023)
chr3 (177-230)||(36562291-36562344)
chr3 (177-230)||(45205403-45205456)
[»] chr2 (1 HSPs)
chr2 (175-249)||(39147873-39147947)
[»] chr4 (2 HSPs)
chr4 (175-247)||(19174664-19174736)
chr4 (181-249)||(39654931-39654999)
[»] chr1 (1 HSPs)
chr1 (193-249)||(21401505-21401561)


Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 20243639 - 20243389
Alignment:
Q  1 tcacgacaaccaacttaaaaaccatacaaccttttggtcatccttaagagcatgtaacgttgtttcgggtaacgcgttacatagaggccacgagctacaa 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  20243639 tcacgacaaacaacttaaaaaccatacaaccttttggtcatccttaagagcatgtaacgctgtttcgggtaacgctttacatagaggccacgagctacaa 20243540  T
Q  101 gatgcaaaacctttggttaatctaaagtcattggtaggcaaaccatttttaagaatcttccattataagtggttgatgtattatttgaaggaccatttat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||  |||||||||    
T  20243539 gatgcaaaacctttggttaatctaaagtcattggtaggcaaaccatttttaagaattttccattataagtggttgatgtgttatttgaacaaccatttat 20243440  T
Q  201 gtgacaattttttagacaataataaatttacaaacaaaatgaggtattgtcacggaaattacc 263  Q
    ||||            |||||||||||||||||||||||||||||||||||||||||||||||    
T  20243439 gtga------------caataataaatttacaaacaaaatgaggtattgtcacggaaattacc 20243389  T

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Target: chr8; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 20249522 - 20249772
Alignment:
Q  1 tcacgacaaccaacttaaaaaccatacaaccttttggtcatccttaagagcatgtaacgttgtttcgggtaacgcgttacatagaggccacgagctacaa 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  20249522 tcacgacaaacaacttaaaaaccatacaaccttttggtcatccttaagagcatgtaacgctgtttcgggtaacgctttacatagaggccacgagctacaa 20249621  T
Q  101 gatgcaaaacctttggttaatctaaagtcattggtaggcaaaccatttttaagaatcttccattataagtggttgatgtattatttgaaggaccatttat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||  |||||||||    
T  20249622 gatgcaaaacctttggttaatctaaagtcattggtaggcaaaccatttttaagaattttccattataagtggttgatgtgttatttgaacaaccatttat 20249721  T
Q  201 gtgacaattttttagacaataataaatttacaaacaaaatgaggtattgtcacggaaattacc 263  Q
    ||            |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20249722 gt------------gacaataataaatttacaaacaaaatgaggtattgtcacggaaattacc 20249772  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 355
Target Start/End: Complemental strand, 20243340 - 20243298
Alignment:
Q  313 ttatcataaaatggttgtacatctatcatttatgtaagtggtt 355  Q
    |||||| |||||| |||||||||||||||||||||||||||||    
T  20243340 ttatcacaaaatgattgtacatctatcatttatgtaagtggtt 20243298  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 355
Target Start/End: Original strand, 20249821 - 20249863
Alignment:
Q  313 ttatcataaaatggttgtacatctatcatttatgtaagtggtt 355  Q
    |||||| |||||| |||||||||||||||||||||||||||||    
T  20249821 ttatcacaaaatgattgtacatctatcatttatgtaagtggtt 20249863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 12295102 - 12295058
Alignment:
Q  195 atttatgtgacaattttttagacaataataaatttacaaacaaaa 239  Q
    |||||||||||||||||||| ||||  ||||||||||||| ||||    
T  12295102 atttatgtgacaattttttaaacaaccataaatttacaaagaaaa 12295058  T

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Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 44339963 - 44339713
Alignment:
Q  1 tcacgacaaccaacttaaaaaccatacaaccttttggtcatccttaagagcatgtaacgttgtttcgggtaacgcgttacatagaggccacgagctacaa 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  44339963 tcacgacaaacaacttaaaaaccatacaaccttttggtcatccttaagagcatgtaacgctgtttcgggtaacgctttacatagaggccacgagctacaa 44339864  T
Q  101 gatgcaaaacctttggttaatctaaagtcattggtaggcaaaccatttttaagaatcttccattataagtggttgatgtattatttgaaggaccatttat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||  |||||||||    
T  44339863 gatgcaaaacctttggttaatctaaagtcattggtaggcaaaccatttttaagaattttccattataagtggttgatgtgttatttgaacaaccatttat 44339764  T
Q  201 gtgacaattttttagacaataataaatttacaaacaaaatgaggtattgtcacggaaattacc 263  Q
    ||||            |||||||||||||||||||||||||||||||||||||||||||||||    
T  44339763 gtga------------caataataaatttacaaacaaaatgaggtattgtcacggaaattacc 44339713  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 355
Target Start/End: Complemental strand, 44339663 - 44339621
Alignment:
Q  313 ttatcataaaatggttgtacatctatcatttatgtaagtggtt 355  Q
    |||||| |||||| |||||||||||||||||||||||||||||    
T  44339663 ttatcacaaaatgattgtacatctatcatttatgtaagtggtt 44339621  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 258
Target Start/End: Original strand, 18889936 - 18890000
Alignment:
Q  194 catttatgtgacaattttttagacaataataaatttacaaacaaaatgaggtattgtcacggaaa 258  Q
    ||||| |||||||||||||  |||||| ||||||||||||| ||||| |||||||  ||||||||    
T  18889936 catttgtgtgacaatttttaggacaatcataaatttacaaagaaaattaggtattaacacggaaa 18890000  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 259
Target Start/End: Complemental strand, 9944294 - 9944212
Alignment:
Q  177 tgtattatttgaaggaccatttatgtgacaattttttagacaataataaatttacaaacaaaatgaggtattgtcacggaaat 259  Q
    |||||||||||||  ||||||||||||| ||||||| | ||||  ||||||||| ||| ||||  |||||||| |||| ||||    
T  9944294 tgtattatttgaataaccatttatgtgataatttttgaaacaacgataaatttataaataaaagtaggtattgacacgaaaat 9944212  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 259
Target Start/End: Complemental strand, 19952175 - 19952097
Alignment:
Q  181 ttatttgaaggaccatttatgtgacaattttttagacaataataaatttacaaacaaaatgaggtattgtcacggaaat 259  Q
    |||||||||  ||||||||||| |||| ||| | |||||  ||||||||||||| ||||| |||||||| | |||||||    
T  19952175 ttatttgaaaaaccatttatgtcacaactttatggacaaccataaatttacaaagaaaattaggtattgacgcggaaat 19952097  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 46815747 - 46815813
Alignment:
Q  175 gatgtattatttgaaggaccatttatgtgacaattttttagacaataataaatttacaaacaaaatg 241  Q
    |||||||||||||||  |||||||  |||||||||||| ||||||  ||||||||| ||| ||||||    
T  46815747 gatgtattatttgaacaaccattttggtgacaatttttgagacaactataaatttataaagaaaatg 46815813  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 36546023 - 36545970
Alignment:
Q  177 tgtattatttgaaggaccatttatgtgacaattttttagacaataataaattta 230  Q
    |||||||||||||  ||||||| ||||| || |||||||||||| |||||||||    
T  36546023 tgtattatttgaacaaccatttgtgtgataactttttagacaatcataaattta 36545970  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 36562291 - 36562344
Alignment:
Q  177 tgtattatttgaaggaccatttatgtgacaattttttagacaataataaattta 230  Q
    |||||||||||||  ||||||| ||||| || |||||||||||| |||||||||    
T  36562291 tgtattatttgaacaaccatttgtgtgataactttttagacaatcataaattta 36562344  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 45205456 - 45205403
Alignment:
Q  177 tgtattatttgaaggaccatttatgtgacaattttttagacaataataaattta 230  Q
    |||||||||||||  ||||||| |||||||| |||| ||||||| |||||||||    
T  45205456 tgtattatttgaacaaccatttgtgtgacaacttttgagacaattataaattta 45205403  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 249
Target Start/End: Complemental strand, 39147947 - 39147873
Alignment:
Q  175 gatgtattatttgaaggaccatttatgtgacaattttttagacaataataaatttacaaacaaaatgaggtattg 249  Q
    ||||| |||||||||  |||||||   |||||| ||||  |||||| ||||||||||||| ||||||||||||||    
T  39147947 gatgtgttatttgaacaaccattttaatgacaacttttgggacaatcataaatttacaaaaaaaatgaggtattg 39147873  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 19174664 - 19174736
Alignment:
Q  175 gatgtattatttgaaggaccatttatgtgacaattttttagacaataataaatttacaaacaaaatgaggtat 247  Q
    ||||| |||||||||  |||| || |||||||| |||| ||||||  ||||||||||||| ||||| ||||||    
T  19174664 gatgtgttatttgaacaaccaattgtgtgacaacttttgagacaaacataaatttacaaagaaaattaggtat 19174736  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 39654999 - 39654931
Alignment:
Q  181 ttatttgaaggaccatttatgtgacaattttttagacaataataaatttacaaacaaaatgaggtattg 249  Q
    |||||||||  || |||||  ||| ||||||| ||||||  ||||||||||||| ||||||||||||||    
T  39654999 ttatttgaacaactatttagatgataatttttaagacaaccataaatttacaaagaaaatgaggtattg 39654931  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 21401561 - 21401505
Alignment:
Q  193 ccatttatgtgacaattttttagacaataataaatttacaaacaaaatgaggtattg 249  Q
    ||||||||||||||| |||| | ||||| | || |||||||| ||||||||||||||    
T  21401561 ccatttatgtgacaacttttgaaacaatcaaaattttacaaagaaaatgaggtattg 21401505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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