View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14683_low_6 (Length: 361)

Name: NF14683_low_6
Description: NF14683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14683_low_6
NF14683_low_6
[»] chr2 (2 HSPs)
chr2 (22-205)||(15996537-15996720)
chr2 (284-342)||(15996790-15996849)
[»] chr3 (4 HSPs)
chr3 (173-203)||(28945979-28946009)
chr3 (168-205)||(50129187-50129224)
chr3 (173-205)||(37238752-37238784)
chr3 (314-342)||(50170585-50170613)
[»] chr8 (1 HSPs)
chr8 (176-205)||(9399672-9399701)
[»] chr7 (1 HSPs)
chr7 (177-205)||(24393632-24393660)


Alignment Details
Target: chr2 (Bit Score: 156; Significance: 8e-83; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 22 - 205
Target Start/End: Original strand, 15996537 - 15996720
Alignment:
Q  22 gagggagagaattgaaatcaaaggtccgtaattagctcgtgaatcaacttttcgtggtaacaatcggttcccttaattctaaaggtgtggtagtttggta 121  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  15996537 gagggagagaattgaaatcaaaggcccgtaattagcccgtgaatcaacttttcgtggtaacaatcgtttcccttagttctaaaggtgtggtagtttggta 15996636  T
Q  122 cttattttttataatagtggtactgtcattaaaaaacatatttttctattcattttatgggtcatgttaacttgtgcccttagg 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||    
T  15996637 cttattttttataatagtggtactgtcattaaaaaacatatttttgtattcattttataggtcatgttaacttgtgcctttagg 15996720  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 342
Target Start/End: Original strand, 15996790 - 15996849
Alignment:
Q  284 ttgaatgcacaatttccaagaannnnnnn-cacatttggtttcttaacttatgccccaag 342  Q
    ||||||||||||||||||||||        ||||||||||||||||||||||||||||||    
T  15996790 ttgaatgcacaatttccaagaattttttttcacatttggtttcttaacttatgccccaag 15996849  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 203
Target Start/End: Complemental strand, 28946009 - 28945979
Alignment:
Q  173 attttatgggtcatgttaacttgtgccctta 203  Q
    |||||||||||||||||||||||||||||||    
T  28946009 attttatgggtcatgttaacttgtgccctta 28945979  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 205
Target Start/End: Complemental strand, 50129224 - 50129187
Alignment:
Q  168 tattcattttatgggtcatgttaacttgtgcccttagg 205  Q
    |||| ||| |||||||||||||||||||||||||||||    
T  50129224 tatttattatatgggtcatgttaacttgtgcccttagg 50129187  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 37238752 - 37238784
Alignment:
Q  173 attttatgggtcatgttaacttgtgcccttagg 205  Q
    |||||| ||||||||||||||||||||||||||    
T  37238752 attttaagggtcatgttaacttgtgcccttagg 37238784  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 342
Target Start/End: Original strand, 50170585 - 50170613
Alignment:
Q  314 acatttggtttcttaacttatgccccaag 342  Q
    |||||||||||||||||||||||||||||    
T  50170585 acatttggtttcttaacttatgccccaag 50170613  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 205
Target Start/End: Complemental strand, 9399701 - 9399672
Alignment:
Q  176 ttatgggtcatgttaacttgtgcccttagg 205  Q
    ||||||||||||||||||||||||||||||    
T  9399701 ttatgggtcatgttaacttgtgcccttagg 9399672  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 205
Target Start/End: Complemental strand, 24393660 - 24393632
Alignment:
Q  177 tatgggtcatgttaacttgtgcccttagg 205  Q
    |||||||||||||||||||||||||||||    
T  24393660 tatgggtcatgttaacttgtgcccttagg 24393632  T

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