View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14683_low_8 (Length: 330)
Name: NF14683_low_8
Description: NF14683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14683_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 44 - 312
Target Start/End: Complemental strand, 3531951 - 3531683
Alignment:
| Q |
44 |
aatgtatgttatgctgttgatggtaattagcatgagtgtgattagcatattagatgcacaagttcttccaccgtgcggtaaaccgttattgccatgcatt |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3531951 |
aatgtatgttatgctgttgatggtaattagcatgagtgtgattagcatattagatgcacaagttcttccaccgtgcggtaaaccgttattgccatgcatt |
3531852 |
T |
|
| Q |
144 |
gagtacgctaactccactagtcattcgatacaagacatttatccaccagacatatgctgcactgccattaaagatgtttttgatgcaacccaagaaacat |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3531851 |
gagtacgctaactccactagtcattcgatacaagacatttatccaccagacatatgctgcactgccattaaagatgtttttgatgcaacccaagaaacat |
3531752 |
T |
|
| Q |
244 |
gtttctgtcaacttgtctacactcctggtttatttgaagcttttggtgttaaattcactgtagggtacc |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3531751 |
gtttctgtcaacttgtctacactcctggtttatttgaagcttttggtgttaaattcactgtagggtacc |
3531683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 3531998 - 3531960
Alignment:
| Q |
12 |
attaaggtccgtagtctcatgaattacaacaaaatgtat |
50 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3531998 |
attaaggtccgtagtctcatgaattacaacaaaatgtat |
3531960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 3527519 - 3527470
Alignment:
| Q |
66 |
gtaattagcatgagtgtgattagcatattagatgcacaagttcttccacc |
115 |
Q |
| |
|
||||||||||||||||| |||||| || ||||||||||||| |||||||| |
|
|
| T |
3527519 |
gtaattagcatgagtgtaattagcttagtagatgcacaagtgcttccacc |
3527470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University