View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14683_low_9 (Length: 307)
Name: NF14683_low_9
Description: NF14683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14683_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 11 - 291
Target Start/End: Original strand, 1459970 - 1460250
Alignment:
| Q |
11 |
tatatgaagttttactcgtaagagaaggagaattttcataaagtggcaataccttgaagttcctggtacaagggttccatattacaagtctaacatgcct |
110 |
Q |
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| T |
1459970 |
tatatgaagttttactcgtaagagaaggaggattttcataaagtgacaataccttgaagttcctagtacaagggttccatattacaagtctaacatgcct |
1460069 |
T |
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| Q |
111 |
gttataatagtcagtcgttttgaaacagatgatgccatcgcaagagtcaaccaaggaaacattatagcaattgtctatagggaagtaaagcttcgtctcc |
210 |
Q |
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| T |
1460070 |
gttataatagtcagtcgttttgaaacagatgataccatcgcaagagtcaaccaaggaaacattatagcaattgtctatagggaagtaaagcttcgtctcc |
1460169 |
T |
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| Q |
211 |
gagatagtgctagtgaaattgttaaatatagagggcagtcgggaatcaaagacaaattcaaggtctttgaaattaaaatac |
291 |
Q |
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| T |
1460170 |
gagatagtgctagtgaaattgttaaatatagagggcagtcgggaatcaaagacaaattcaaggtctttgaaattaaaatac |
1460250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 11 - 266
Target Start/End: Original strand, 1471352 - 1471607
Alignment:
| Q |
11 |
tatatgaagttttactcgtaagagaaggagaattttcataaagtggcaataccttgaagttcctggtacaagggttccatattacaagtctaacatgcct |
110 |
Q |
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| T |
1471352 |
tatatgaagttttagttgtaagagaaagtggattttccaaaagtggcaataccttgaatttcctcgtacaagggttccatattacaagattaccatgact |
1471451 |
T |
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| Q |
111 |
gttataatagtcagtcgttttgaaacagatgatgccatcgcaagagtcaaccaaggaaacattatagcaattgtctatagggaagtaaagcttcgtctcc |
210 |
Q |
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| T |
1471452 |
gttataatattcaatcgttttgaaacagatgatgccatcgcaagagtcgatcaaggaaacattatagcacgtgtatagagggaagtggagcttcctctcc |
1471551 |
T |
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| Q |
211 |
gagatagtgctagtgaaattgttaaatatagagggcagtcgggaatcaaagacaaa |
266 |
Q |
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| T |
1471552 |
gagatggtgctagtgaagttgtttaaaatagaggaaagtcggaaatcaaagccaaa |
1471607 |
T |
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