View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14684_high_10 (Length: 494)

Name: NF14684_high_10
Description: NF14684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14684_high_10
NF14684_high_10
[»] chr4 (3 HSPs)
chr4 (44-480)||(3566819-3567253)
chr4 (233-406)||(11962072-11962243)
chr4 (242-321)||(45638746-45638824)
[»] chr6 (6 HSPs)
chr6 (233-406)||(18132988-18133159)
chr6 (233-406)||(21535750-21535921)
chr6 (233-406)||(21395591-21395762)
chr6 (233-407)||(18131781-18131953)
chr6 (300-404)||(7033339-7033443)
chr6 (293-406)||(4303040-4303153)
[»] chr3 (10 HSPs)
chr3 (233-406)||(45826152-45826323)
chr3 (233-406)||(7197758-7197929)
chr3 (233-406)||(54994651-54994822)
chr3 (234-378)||(51274428-51274571)
chr3 (233-409)||(592543-592717)
chr3 (233-406)||(48637538-48637709)
chr3 (233-406)||(2386292-2386471)
chr3 (233-410)||(40976824-40977006)
chr3 (108-172)||(51273605-51273669)
chr3 (183-237)||(51273696-51273750)
[»] chr1 (11 HSPs)
chr1 (233-406)||(8788533-8788704)
chr1 (233-406)||(10582742-10582913)
chr1 (233-406)||(10583948-10584119)
chr1 (233-406)||(8089719-8089890)
chr1 (233-406)||(49122170-49122341)
chr1 (233-378)||(49121981-49122124)
chr1 (233-406)||(49123304-49123475)
chr1 (108-377)||(23540999-23541285)
chr1 (293-406)||(3815222-3815336)
chr1 (293-406)||(36346540-36346653)
chr1 (331-404)||(23540880-23540955)
[»] scaffold0026 (2 HSPs)
scaffold0026 (233-409)||(80759-80933)
scaffold0026 (233-399)||(79563-79727)
[»] chr5 (11 HSPs)
chr5 (233-406)||(19934598-19934769)
chr5 (233-406)||(39701588-39701759)
chr5 (233-406)||(22950305-22950476)
chr5 (233-409)||(29526035-29526210)
chr5 (233-406)||(39702818-39702989)
chr5 (242-406)||(29527251-29527415)
chr5 (233-406)||(41050925-41051099)
chr5 (296-406)||(19139374-19139484)
chr5 (108-167)||(39701837-39701896)
chr5 (108-167)||(39703067-39703126)
chr5 (293-352)||(35144554-35144613)
[»] scaffold0011 (2 HSPs)
scaffold0011 (233-406)||(211666-211837)
scaffold0011 (233-406)||(205589-205760)
[»] chr7 (5 HSPs)
chr7 (233-406)||(6081243-6081414)
chr7 (233-406)||(6082450-6082621)
chr7 (293-406)||(17901159-17901274)
chr7 (292-403)||(27021363-27021472)
chr7 (110-171)||(27021151-27021212)
[»] chr8 (5 HSPs)
chr8 (233-406)||(40254447-40254616)
chr8 (233-406)||(2411061-2411231)
chr8 (294-399)||(21661182-21661287)
chr8 (331-406)||(26246968-26247043)
chr8 (183-231)||(2411249-2411297)
[»] scaffold0227 (3 HSPs)
scaffold0227 (233-406)||(12266-12437)
scaffold0227 (233-406)||(11118-11289)
scaffold0227 (108-172)||(10972-11036)
[»] chr2 (4 HSPs)
chr2 (233-406)||(33789921-33790095)
chr2 (233-406)||(12324895-12325069)
chr2 (231-331)||(18955406-18955505)
chr2 (345-406)||(3302515-3302576)
[»] scaffold0018 (1 HSPs)
scaffold0018 (233-379)||(177890-178034)


Alignment Details
Target: chr4 (Bit Score: 418; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 44 - 480
Target Start/End: Original strand, 3566819 - 3567253
Alignment:
Q  44 ttatactgatctgagttgtgtaagcggtgtaatgtactattagcacaagctcctgttaataaaatgttagcaatatgactcgtaaggtcagaagttacag 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3566819 ttatactgatctgagttgtgtaagcggtgtaatgtactattagcacaagctcctgttaataaaatgttagcaatatgactcgtaaggtcagaagttacag 3566918  T
Q  144 aatattagtacaatgtttatttaatatatattacaaattagtaactgctatctgcagtaaaggttatctgccgaacttttatgtaactgttataaataaa 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3566919 aatattagtacaatgtttatttaatatatattacaaattagtaactgctatctgcagtaaaggttatctgccaaacttttatgtaactgttataaataaa 3567018  T
Q  244 gatgcagaggaaaagaaggggcattcagggattggaataaaggataggtagggagagaccaaactatcgaattcttggcggggagagaaccaagacaatt 343  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3567019 gatgcagaggaaaagaaggggcattc--ggattggaataaaggataggtagggagagaccaaactatcgaattcttggaggggagagaaccaagacaatt 3567116  T
Q  344 gaatttcttgagattgtattgtaatattactattaggttatattttgatctcagtttctatcataaaatttcttttacaaaaacgcactctaaaacatat 443  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3567117 gaatttcttgagattgtattgtaatattactattaggttatattttgatctcagtttctatcataaaatttcttttacaaaaacgcactctaaaacatat 3567216  T
Q  444 aaacacatctataggctggaacaaatttgttatatct 480  Q
    |||||||||||||||||||||||||||||||||||||    
T  3567217 aaacacatctataggctggaacaaatttgttatatct 3567253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 233 - 406
Target Start/End: Original strand, 11962072 - 11962243
Alignment:
Q  233 ttataaataaagatgcagaggaaaagaaggggcattcagggattggaataaaggataggtagggagagaccaaactatcgaattcttggcggggagagaa 332  Q
    |||||||||| ||||||||||||||||| ||  ||||||| |||||  |||||||| |||||||| ||||||| || |||||  ||||| ||||||||||    
T  11962072 ttataaataa-gatgcagaggaaaagaaaggt-attcaggcattggggtaaaggattggtagggatagaccaagctctcgaacacttggaggggagagaa 11962169  T
Q  333 ccaagacaattgaatttcttgagattgtattgtaatattactattaggttatattttgatctcagtttctatca 406  Q
    |||||||  | |||||||||| |||| ||||||||| | |||||||| |||||||||||| |||||| ||||||    
T  11962170 ccaagactctcgaatttcttgggattatattgtaatctaactattagtttatattttgatatcagttcctatca 11962243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 242 - 321
Target Start/End: Complemental strand, 45638824 - 45638746
Alignment:
Q  242 aagatgcagaggaaaagaaggggcattcagggattggaataaaggataggtagggagagaccaaactatcgaattcttgg 321  Q
    ||||||||||||||||||| || |||||||||||||| ||||||| |||||||||||||||||| || ||||||||||||    
T  45638824 aagatgcagaggaaaagaaagg-cattcagggattgggataaagggtaggtagggagagaccaagctctcgaattcttgg 45638746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 5e-48; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 233 - 406
Target Start/End: Complemental strand, 18133159 - 18132988
Alignment:
Q  233 ttataaataaagatgcagaggaaaagaaggggcattcagggattggaataaaggataggtagggagagaccaaactatcgaattcttggcggggagagaa 332  Q
    |||||||||| ||||||||||||||||| ||  ||||||||||||| |||||||||||||||||||||||||| || |||||||||||| ||||||||||    
T  18133159 ttataaataa-gatgcagaggaaaagaaaggt-attcagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaa 18133062  T
Q  333 ccaagacaattgaatttcttgagattgtattgtaatattactattaggttatattttgatctcagtttctatca 406  Q
    |||||||  | |||||||||| |||| ||||||||| |||||||||| |||||||||||| |||||| ||||||    
T  18133061 ccaagactctcgaatttcttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 18132988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 233 - 406
Target Start/End: Original strand, 21535750 - 21535921
Alignment:
Q  233 ttataaataaagatgcagaggaaaagaaggggcattcagggattggaataaaggataggtagggagagaccaaactatcgaattcttggcggggagagaa 332  Q
    |||||||||| ||||||||||||||||| ||  ||||||||||||| |||||||||||||||||||||||||| || |||||||||||| ||||||||||    
T  21535750 ttataaataa-gatgcagaggaaaagaaaggt-attcagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaa 21535847  T
Q  333 ccaagacaattgaatttcttgagattgtattgtaatattactattaggttatattttgatctcagtttctatca 406  Q
    |||||||  | |||||||||| |||| ||||||||| |||||||||| |||||||||||| |||||| ||||||    
T  21535848 ccaagactctcgaatttcttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 21535921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 233 - 406
Target Start/End: Complemental strand, 21395762 - 21395591
Alignment:
Q  233 ttataaataaagatgcagaggaaaagaaggggcattcagggattggaataaaggataggtagggagagaccaaactatcgaattcttggcggggagagaa 332  Q
    |||||||||| ||||||||||||||||| || |||||||||||||| ||||||||| |||||||||||||||| || |||||||||||| ||||||| ||    
T  21395762 ttataaataa-gatgcagaggaaaagaaagg-cattcagggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagacaa 21395665  T
Q  333 ccaagacaattgaatttcttgagattgtattgtaatattactattaggttatattttgatctcagtttctatca 406  Q
    |||||||  |||||||||||| |||| |||| |||| ||||| |||| |||||||||||| |||||||||||||    
T  21395664 ccaagactcttgaatttcttgggattatattataatcttactgttagtttatattttgatatcagtttctatca 21395591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 233 - 407
Target Start/End: Complemental strand, 18131953 - 18131781
Alignment:
Q  233 ttataaataaagatgcagaggaaaagaaggggcattcagggattggaataaaggataggtagggagagaccaaactatcgaattcttggcggggagagaa 332  Q
    |||||||||| ||||||||||||||||| ||  ||||||||||||| ||||||||| |||||||||||||||| || |||||| |||||  |||||||||    
T  18131953 ttataaataa-gatgcagaggaaaagaaaggt-attcagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaagggagagaa 18131856  T
Q  333 ccaagacaattgaatttcttgagattgtattgtaatattactattaggttatattttgatctcagtttctatcat 407  Q
    |||||||  | |||||||||| |||| ||||||||| |||||||||| |||||||||||| |||||| |||||||    
T  18131855 ccaagactctcgaatttcttgggattatattgtaatcttactattagtttatattttgatatcagttcctatcat 18131781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 300 - 404
Target Start/End: Complemental strand, 7033443 - 7033339
Alignment:
Q  300 gaccaaactatcgaattcttggcggggagagaaccaagacaattgaatttcttgagattgtattgtaatattactattaggttatattttgatctcagtt 399  Q
    |||||| || |||||||||||| |||||||||||||||||  | |||||||||| |||| ||||||||| |||||||||| |||||||||||| ||||||    
T  7033443 gaccaagctttcgaattcttggaggggagagaaccaagactctcgaatttcttgggattatattgtaatcttactattagtttatattttgatatcagtt 7033344  T
Q  400 tctat 404  Q
     ||||    
T  7033343 cctat 7033339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 293 - 406
Target Start/End: Original strand, 4303040 - 4303153
Alignment:
Q  293 agggagagaccaaactatcgaattcttggcggggagagaaccaagacaattgaatttcttgagattgtattgtaatattactattaggttatattttgat 392  Q
    ||||||||||||| || |||||||||||| |||||||||||||||||  | |||||||||| || | ||||||| ||||| |||||  ||  ||||||||    
T  4303040 agggagagaccaagctctcgaattcttggaggggagagaaccaagactctagaatttcttgggaatctattgtattattaatattaatttggattttgat 4303139  T
Q  393 ctcagtttctatca 406  Q
      ||||||||||||    
T  4303140 accagtttctatca 4303153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 5e-48; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 233 - 406
Target Start/End: Complemental strand, 45826323 - 45826152
Alignment:
Q  233 ttataaataaagatgcagaggaaaagaaggggcattcagggattggaataaaggataggtagggagagaccaaactatcgaattcttggcggggagagaa 332  Q
    |||||||||| ||||||||||||||||| ||  ||||||||||||| |||||||||||||||||||||||||| || |||||||||||| ||||||||||    
T  45826323 ttataaataa-gatgcagaggaaaagaaaggt-attcagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaa 45826226  T
Q  333 ccaagacaattgaatttcttgagattgtattgtaatattactattaggttatattttgatctcagtttctatca 406  Q
    |||||||  |  ||||||||| |||| |||||||||||||||||||| |||||||||||| |||||| ||||||    
T  45826225 ccaagactctctaatttcttgggattatattgtaatattactattagtttatattttgatatcagttcctatca 45826152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 233 - 406
Target Start/End: Original strand, 7197758 - 7197929
Alignment:
Q  233 ttataaataaagatgcagaggaaaagaaggggcattcagggattggaataaaggataggtagggagagaccaaactatcgaattcttggcggggagagaa 332  Q
    |||||||||| ||||||||||||||||| || |||||||||||||| ||||||||| |||||||||||||||| || |||||| ||||| ||||||||||    
T  7197758 ttataaataa-gatgcagaggaaaagaaagg-cattcagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaa 7197855  T
Q  333 ccaagacaattgaatttcttgagattgtattgtaatattactattaggttatattttgatctcagtttctatca 406  Q
    |||||||  | |||||||||| |||| ||||||||| |||||||||| |||||||||||| |||||| ||||||    
T  7197856 ccaagactctcgaatttcttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 7197929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 233 - 406
Target Start/End: Original strand, 54994651 - 54994822
Alignment:
Q  233 ttataaataaagatgcagaggaaaagaaggggcattcagggattggaataaaggataggtagggagagaccaaactatcgaattcttggcggggagagaa 332  Q
    |||||||||| ||||||||||||||||| ||  ||||||||||||| ||||||||| |||||||||||||||| || |||||||||||| ||||||||||    
T  54994651 ttataaataa-gatgcagaggaaaagaaaggt-attcagggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaa 54994748  T
Q  333 ccaagacaattgaatttcttgagattgtattgtaatattactattaggttatattttgatctcagtttctatca 406  Q
    |||||||  | |||||||||| |||| ||||||||| |||||||||| |||||||||||| |||||| ||||||    
T  54994749 ccaagactctcgaatttcttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 54994822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 234 - 378
Target Start/End: Original strand, 51274428 - 51274571
Alignment:
Q  234 tataaataaagatgcagaggaaaagaaggggcattcagggattggaataaaggataggtagggagagaccaaactatcgaattcttggcggggagagaac 333  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| || || ||||||||| |||| ||||||    
T  51274428 tataaataaagatgcagaggaaaagaaggg-cattcagggattgggataaaggataggtagggagagaccaagctctcaaattcttggaggggggagaac 51274526  T
Q  334 caagacaattgaatttcttgagattgtattgtaatattactatta 378  Q
    ||||||  | |||||||||| |||| |||||||||||||||||||    
T  51274527 caagactctcgaatttcttgggattatattgtaatattactatta 51274571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 233 - 409
Target Start/End: Original strand, 592543 - 592717
Alignment:
Q  233 ttataaataaagatgcagaggaaaagaaggggcattcagggattggaataaaggataggtagggagagaccaaactatcgaattcttggcggggagagaa 332  Q
    |||||||||| |||||| |||||||||| ||  ||||||||||||| ||||||||| ||||||||||| |||| || |||||||||||| ||||||||||    
T  592543 ttataaataa-gatgcaaaggaaaagaaaggt-attcagggattgggataaaggattggtagggagagcccaagctctcgaattcttggaggggagagaa 592640  T
Q  333 ccaagacaattgaatttcttgagattgtattgtaatattactattaggttatattttgatctcagtttctatcataa 409  Q
    |||||||  | |||||||||| |||| ||||||||| |||||||||| |||||||||||| |||||| ||| |||||    
T  592641 ccaagaccctcgaatttcttgggattatattgtaatcttactattagtttatattttgatatcagttcctaccataa 592717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 233 - 406
Target Start/End: Complemental strand, 48637709 - 48637538
Alignment:
Q  233 ttataaataaagatgcagaggaaaagaaggggcattcagggattggaataaaggataggtagggagagaccaaactatcgaattcttggcggggagagaa 332  Q
    |||||||||| |||||||||||||||| | || ||| ||||||||| ||||||||| |||||||||||||||| || |||||| ||||| ||||||||||    
T  48637709 ttataaataa-gatgcagaggaaaaga-gaggtattgagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaa 48637612  T
Q  333 ccaagacaattgaatttcttgagattgtattgtaatattactattaggttatattttgatctcagtttctatca 406  Q
    |||||||  |  ||||||||| |||| ||||||||| |||||||||| |||||||||||| |||||| ||||||    
T  48637611 ccaagactctcaaatttcttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 48637538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 233 - 406
Target Start/End: Complemental strand, 2386471 - 2386292
Alignment:
Q  233 ttataaataaagatgcagaggaaaagaaggggcattcagggattggaataaaggataggtagggagagaccaaactatcgaattcttggcggggagagaa 332  Q
    |||||||||| ||||||||||||||||| || |||||||||||||  |||||||||||||||||||||||||| || |||||||||||| ||||||||||    
T  2386471 ttataaataa-gatgcagaggaaaagaaagg-cattcagggattgagataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaa 2386374  T
Q  333 ccaagacaattgaatttcttgagattgtattgtaat--------attactattaggttatattttgatctcagtttctatca 406  Q
    || ||||  | |||||||||| |||| |||||||||        ||||||||||| |||||||||||| |||||||||||||    
T  2386373 ccgagactctcgaatttcttgggattatattgtaatattagtatattactattagtttatattttgatatcagtttctatca 2386292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 233 - 410
Target Start/End: Original strand, 40976824 - 40977006
Alignment:
Q  233 ttataaataaagatgcagaggaaaagaaggggcattcagggattggaataaaggataggtaggga-------gagaccaaactatcgaattcttggcggg 325  Q
    |||||||||| ||||||||||||||||| || ||| |||||||||| ||||||||  |||| |||       |||||||| || |||||||||||| |||    
T  40976824 ttataaataa-gatgcagaggaaaagaaagg-catgcagggattgggataaaggactggtatggactatggagagaccaagctctcgaattcttggaggg 40976921  T
Q  326 gagagaaccaagacaattgaatttcttgagattgtattgtaatattactattaggttatattttgatctcagtttctatcataaa 410  Q
    ||||||||||||||  | |||||| ||| |||| |||||||||||||||||||| |||||||||||| |||||| ||||||||||    
T  40976922 gagagaaccaagactctcgaattttttgggattatattgtaatattactattagtttatattttgatatcagttcctatcataaa 40977006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 51273605 - 51273669
Alignment:
Q  108 tgttagcaatatgactcgtaaggtcagaagttacagaatattagtacaatgtttatttaatatat 172  Q
    ||||||||||| ||||| ||||| |||||||||||||||||||||| | |||| |||||||||||    
T  51273605 tgttagcaataggactcctaagggcagaagttacagaatattagtagattgttaatttaatatat 51273669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 183 - 237
Target Start/End: Original strand, 51273696 - 51273750
Alignment:
Q  183 agtaactgctatctgcagtaaaggttatctgccgaacttttatgtaactgttata 237  Q
    ||||||| |||||||||||||||||||||||| |||||| |||||||||| ||||    
T  51273696 agtaacttctatctgcagtaaaggttatctgcagaacttctatgtaactgctata 51273750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 5e-48; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 233 - 406
Target Start/End: Complemental strand, 8788704 - 8788533
Alignment:
Q  233 ttataaataaagatgcagaggaaaagaaggggcattcagggattggaataaaggataggtagggagagaccaaactatcgaattcttggcggggagagaa 332  Q
    |||||||||| ||||||||||||||||| ||  ||||||||||||| |||||||||||||||||||||||||| || |||||||||||| ||||||||||    
T  8788704 ttataaataa-gatgcagaggaaaagaaaggt-attcagggattgggataaaggataggtagggagagaccaagctttcgaattcttggaggggagagaa 8788607  T
Q  333 ccaagacaattgaatttcttgagattgtattgtaatattactattaggttatattttgatctcagtttctatca 406  Q
    |||||||  |  ||||||||| |||| |||||||||||||||||||| |||||||||||| |||||| ||||||    
T  8788606 ccaagactctctaatttcttgggattatattgtaatattactattagtttatattttgatatcagttcctatca 8788533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 233 - 406
Target Start/End: Original strand, 10582742 - 10582913
Alignment:
Q  233 ttataaataaagatgcagaggaaaagaaggggcattcagggattggaataaaggataggtagggagagaccaaactatcgaattcttggcggggagagaa 332  Q
    |||||||||| |||||||| |||||||| ||  ||||||||||||| ||||||||| |||||||||||||||| || |||||| ||||| ||||||||||    
T  10582742 ttataaataa-gatgcagaagaaaagaaaggt-attcagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaa 10582839  T
Q  333 ccaagacaattgaatttcttgagattgtattgtaatattactattaggttatattttgatctcagtttctatca 406  Q
    |||||||  | |||||||||| |||||||||||||| |||||||||| |||||||||||| |||||| ||||||    
T  10582840 ccaagactctcgaatttcttgggattgtattgtaatcttactattagtttatattttgatatcagttcctatca 10582913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 233 - 406
Target Start/End: Original strand, 10583948 - 10584119
Alignment:
Q  233 ttataaataaagatgcagaggaaaagaaggggcattcagggattggaataaaggataggtagggagagaccaaactatcgaattcttggcggggagagaa 332  Q
    |||||||||| |||||||| |||||||| ||  ||||||||||||| ||||||||| |||||||||||||||| || |||||| ||||| ||||||||||    
T  10583948 ttataaataa-gatgcagaagaaaagaaaggt-attcagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaa 10584045  T
Q  333 ccaagacaattgaatttcttgagattgtattgtaatattactattaggttatattttgatctcagtttctatca 406  Q
    |||||||  | |||||||||| |||||||||||||| |||||||||| |||||||||||| |||||| ||||||    
T  10584046 ccaagactctcgaatttcttgggattgtattgtaatcttactattagtttatattttgatatcagttcctatca 10584119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 233 - 406
Target Start/End: Complemental strand, 8089890 - 8089719
Alignment:
Q  233 ttataaataaagatgcagaggaaaagaaggggcattcagggattggaataaaggataggtagggagagaccaaactatcgaattcttggcggggagagaa 332  Q
    |||||||||| |||||||| |||||||| ||  ||||||||||||| ||||||||| |||||||||||||||| || |||||| ||||| ||||||||||    
T  8089890 ttataaataa-gatgcagaagaaaagaaaggt-attcagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaa 8089793  T
Q  333 ccaagacaattgaatttcttgagattgtattgtaatattactattaggttatattttgatctcagtttctatca 406  Q
    |||||||  | |||||||||| |||| ||||||||| |||||||||| |||||||||||| |||||| ||||||    
T  8089792 ccaagactctcgaatttcttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 8089719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 233 - 406
Target Start/End: Original strand, 49122170 - 49122341
Alignment:
Q  233 ttataaataaagatgcagaggaaaagaaggggcattcagggattggaataaaggataggtagggagagaccaaactatcgaattcttggcggggagagaa 332  Q
    |||||||||| ||||||||||||||||| ||  ||||||||||||| ||||||||| |||||||||||||||| || |||||| ||||| ||||||||||    
T  49122170 ttataaataa-gatgcagaggaaaagaaaggt-attcagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaa 49122267  T
Q  333 ccaagacaattgaatttcttgagattgtattgtaatattactattaggttatattttgatctcagtttctatca 406  Q
    |||||||  | |||||||||| |||| ||||||||| |||||||||| ||||||||| || |||||| ||||||    
T  49122268 ccaagactctcgaatttcttgggattatattgtaatcttactattagtttatattttcatatcagttcctatca 49122341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 233 - 378
Target Start/End: Original strand, 49121981 - 49122124
Alignment:
Q  233 ttataaataaagatgcagaggaaaagaaggggcattcagggattggaataaaggataggtagggagagaccaaactatcgaattcttggcggggagagaa 332  Q
    |||||||||| ||||||||||||||||| ||  ||||||||||||| ||||||||| |||||||||||| ||| || |||||| ||||| ||||||||||    
T  49121981 ttataaataa-gatgcagaggaaaagaaaggt-attcagggattgggataaaggattggtagggagagatcaagctctcgaatacttggaggggagagaa 49122078  T
Q  333 ccaagacaattgaatttcttgagattgtattgtaatattactatta 378  Q
    |||||||  |  ||||||||| |||| ||||||||| |||||||||    
T  49122079 ccaagactctcaaatttcttgggattatattgtaatcttactatta 49122124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 233 - 406
Target Start/End: Original strand, 49123304 - 49123475
Alignment:
Q  233 ttataaataaagatgcagaggaaaagaaggggcattcagggattggaataaaggataggtagggagagaccaaactatcgaattcttggcggggagagaa 332  Q
    |||||||||| |||||||| |||||||| ||  |||||||||||||  |||||||| ||||||||||||     |  |||||| ||||| ||||||||||    
T  49123304 ttataaataa-gatgcagaagaaaagaaaggt-attcagggattggggtaaaggattggtagggagagattgggcactcgaatacttggaggggagagaa 49123401  T
Q  333 ccaagacaattgaatttcttgagattgtattgtaatattactattaggttatattttgatctcagtttctatca 406  Q
    |||||||  | |||||||||| |||| |||| |||| |||||||||| |||||||||||| |||||| ||||||    
T  49123402 ccaagactctcgaatttcttgggattatattctaatcttactattagtttatattttgatatcagttcctatca 49123475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 108 - 377
Target Start/End: Complemental strand, 23541285 - 23540999
Alignment:
Q  108 tgttagcaatatgactcgtaaggtcagaagttacagaatattagtacaatgtttatttaatatatattacaaattagtaactgct--atctgcagtaaag 205  Q
    ||||||||||| ||||| || || ||||||||||||| |||||||| | ||||||||||||  |||||| ||||||||||| | |  || |||||| |      
T  23541285 tgttagcaataggactcataggggcagaagttacagagtattagtagattgtttatttaat--atattataaattagtaacggttacatgtgcagtgact 23541188  T
Q  206 gttatctgccgaacttttatgtaactg----------------ttataaataaagatgcagaggaaaagaaggggcattcagggattggaataaaggata 289  Q
    | ||||||| |||||| ||||||||||                |||| |||||||||||| |||||||||| || |||||||||||||| |||| ||||     
T  23541187 gctatctgcagaacttctatgtaactgctatagggagttagtattatgaataaagatgcaaaggaaaagaa-ggacattcagggattgggataatggatt 23541089  T
Q  290 ggtagggagagaccaaactatcg--aattcttggcggggagagaaccaagacaattgaatttcttgagattgtattgtaatattactatt 377  Q
    |||||||||||||||| || | |  ||| |||||  || ||| |||||||||  |||||||||||| |||| || |||||| ||||||||    
T  23541088 ggtagggagagaccaagctcttgaaaatacttggaaggaagaaaaccaagactcttgaatttcttgggattatactgtaatcttactatt 23540999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 293 - 406
Target Start/End: Original strand, 3815222 - 3815336
Alignment:
Q  293 agggagagaccaaactatcgaattcttggcggggagagaaccaagacaattgaatttcttgag-attgtattgtaatattactattaggttatattttga 391  Q
    ||||||||||||| |  |||||||||||| |||||||||||||||||  | ||||||| || | | | ||||||| ||||| |||||  || ||||||||    
T  3815222 agggagagaccaagcactcgaattcttggaggggagagaaccaagactctcgaatttcatgggaaatctattgtattattaatattaatttgtattttga 3815321  T
Q  392 tctcagtttctatca 406  Q
    | |||||||||||||    
T  3815322 tatcagtttctatca 3815336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 406
Target Start/End: Complemental strand, 36346653 - 36346540
Alignment:
Q  293 agggagagaccaaactatcgaattcttggcggggagagaaccaagacaattgaatttcttgagattgtattgtaatattactattaggttatattttgat 392  Q
    ||||||||| ||| || |||||||| ||| |||||||||||||||||  | |||||||||| |    || |||| ||||| |||||  || ||||||| |    
T  36346653 agggagagatcaagctctcgaattcatggaggggagagaaccaagactctcgaatttcttggggaactactgtattattaatattaatttgtattttggt 36346554  T
Q  393 ctcagtttctatca 406  Q
     |||||||||||||    
T  36346553 atcagtttctatca 36346540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 331 - 404
Target Start/End: Complemental strand, 23540955 - 23540880
Alignment:
Q  331 aaccaagacaattgaatttcttgagattgtattgtaatattactattaggt--tatattttgatctcagtttctat 404  Q
    |||||||||  |||||||||||| |||| || |||||| |||||||||| |  ||||||||||| |||||| ||||    
T  23540955 aaccaagactcttgaatttcttgggattatactgtaatcttactattagtttatatattttgatatcagttcctat 23540880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 233 - 409
Target Start/End: Original strand, 80759 - 80933
Alignment:
Q  233 ttataaataaagatgcagaggaaaagaaggggcattcagggattggaataaaggataggtagggagagaccaaactatcgaattcttggcggggagagaa 332  Q
    |||||||||| ||||||||| ||||||| ||  ||||||||||||| |||||||||||||||||||||||||| || |||||||||||| ||||||||||    
T  80759 ttataaataa-gatgcagagaaaaagaaaggt-attcagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaa 80856  T
Q  333 ccaagacaattgaatttcttgagattgtattgtaatattactattaggttatattttgatctcagtttctatcataa 409  Q
    |||||||  | |||||| ||| |||| |||||||||||||||||||| |||||||||||| |||||| |||||||||    
T  80857 ccaagactctcgaatttattgggattatattgtaatattactattagtttatattttgatatcagttcctatcataa 80933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 233 - 399
Target Start/End: Original strand, 79563 - 79727
Alignment:
Q  233 ttataaataaagatgcagaggaaaagaaggggcattcagggattggaataaaggataggtagggagagaccaaactatcgaattcttggcggggagagaa 332  Q
    |||||||||| |||||||||||||| || ||  ||||| ||||| | |||||||||||||| ||||||||||| || |||||||||||| ||||||||||    
T  79563 ttataaataa-gatgcagaggaaaataaaggt-attcatggattaggataaaggataggtacggagagaccaagctctcgaattcttggaggggagagaa 79660  T
Q  333 ccaagacaattgaatttcttgagattgtattgtaatattactattaggttatattttgatctcagtt 399  Q
    |||||||  | |||||||||| |||| |||||||||||||||||||| |||||||||||| ||||||    
T  79661 ccaagactctcgaatttcttgggattatattgtaatattactattagtttatattttgatatcagtt 79727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 233 - 406
Target Start/End: Original strand, 19934598 - 19934769
Alignment:
Q  233 ttataaataaagatgcagaggaaaagaaggggcattcagggattggaataaaggataggtagggagagaccaaactatcgaattcttggcggggagagaa 332  Q
    |||||||||| ||||||||||||||||| || |||| ||||||||| ||||||||| |||||||||||||||| || |||||| ||||| ||||||||||    
T  19934598 ttataaataa-gatgcagaggaaaagaaagg-catttagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaa 19934695  T
Q  333 ccaagacaattgaatttcttgagattgtattgtaatattactattaggttatattttgatctcagtttctatca 406  Q
    |||||||  |||||||||||| |||| ||||||||| |||||||||| |||||||||||| |||||| ||||||    
T  19934696 ccaagactcttgaatttcttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 19934769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 233 - 406
Target Start/End: Complemental strand, 39701759 - 39701588
Alignment:
Q  233 ttataaataaagatgcagaggaaaagaaggggcattcagggattggaataaaggataggtagggagagaccaaactatcgaattcttggcggggagagaa 332  Q
    |||||||||| ||||||||||||||||| || |||||||||||||| ||||||||| |||||||||||||||| || |||||| ||||| ||||||||||    
T  39701759 ttataaataa-gatgcagaggaaaagaaagg-cattcagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaa 39701662  T
Q  333 ccaagacaattgaatttcttgagattgtattgtaatattactattaggttatattttgatctcagtttctatca 406  Q
    |||||||  | |||||||||| |||| ||||||||| |||||||||| |||||||||||| |||||| ||||||    
T  39701661 ccaagactctcgaatttcttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 39701588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 233 - 406
Target Start/End: Original strand, 22950305 - 22950476
Alignment:
Q  233 ttataaataaagatgcagaggaaaagaaggggcattcagggattggaataaaggataggtagggagagaccaaactatcgaattcttggcggggagagaa 332  Q
    |||||||||| |||||||||||||| || ||  ||||||||||||| ||||||||| |||||||||||||||| || |||||| ||||| ||||||||||    
T  22950305 ttataaataa-gatgcagaggaaaataaaggt-attcagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaa 22950402  T
Q  333 ccaagacaattgaatttcttgagattgtattgtaatattactattaggttatattttgatctcagtttctatca 406  Q
    |||||||  | |||||||||| |||| ||||||||| |||||||||| |||||||||||| |||||| ||||||    
T  22950403 ccaagactctcgaatttcttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 22950476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 233 - 409
Target Start/End: Complemental strand, 29526210 - 29526035
Alignment:
Q  233 ttataaataaagatgcagaggaaaagaaggggcattcagggattggaat-aaaggataggtagggagagaccaaactatcgaattcttggcggggagaga 331  Q
    |||||||||| ||||||||||||||||| ||  ||||||||||||| || ||||||| |||||||||||||||| || |||||||||||| |||||||||    
T  29526210 ttataaataa-gatgcagaggaaaagaaaggt-attcagggattgggattaaaggattggtagggagagaccaagctctcgaattcttggaggggagaga 29526113  T
Q  332 accaagacaattgaatttcttgagattgtattgtaatattactattaggttatattttgatctcagtttctatcataa 409  Q
    ||||||||  | | |||||||| |||| ||||||||| |||||||||| |||||||||||| |||||| |||||||||    
T  29526112 accaagactctcggatttcttgggattatattgtaatcttactattagtttatattttgatatcagttcctatcataa 29526035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 233 - 406
Target Start/End: Complemental strand, 39702989 - 39702818
Alignment:
Q  233 ttataaataaagatgcagaggaaaagaaggggcattcagggattggaataaaggataggtagggagagaccaaactatcgaattcttggcggggagagaa 332  Q
    |||||||||| | |||| |||||||||| || |||||||||||||| ||||||||| |||||||||||||||| || |||||| ||||| ||||||||||    
T  39702989 ttataaataa-gttgcaaaggaaaagaaagg-cattcagggattgggataaaggatcggtagggagagaccaagctctcgaatacttggaggggagagaa 39702892  T
Q  333 ccaagacaattgaatttcttgagattgtattgtaatattactattaggttatattttgatctcagtttctatca 406  Q
    |||||||  | |||||||||| |||| ||||||||| |||||||||| |||||||||||| |||||| ||||||    
T  39702891 ccaagactctcgaatttcttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 39702818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 242 - 406
Target Start/End: Complemental strand, 29527415 - 29527251
Alignment:
Q  242 aagatgcagaggaaaagaaggggcattcagggattggaataaaggataggtagggagagaccaaactatcgaattcttggcgggg-agagaaccaagaca 340  Q
    ||||||||||||||||||| ||  ||||||||||||| ||||||||| |||||||||||||||| || | |||||||||| |||| |||||||||||||     
T  29527415 aagatgcagaggaaaagaaaggt-attcagggattgggataaaggattggtagggagagaccaagctcttgaattcttggagggggagagaaccaagact 29527317  T
Q  341 attgaatttcttgagattgtattgtaatattactattaggttatattttgatctcagtttctatca 406  Q
     | |||||||||| |||| ||||||||| |||||||||| |||||||||||| || ||| ||||||    
T  29527316 ctcgaatttcttgggattatattgtaatcttactattagtttatattttgatatctgttcctatca 29527251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 233 - 406
Target Start/End: Complemental strand, 41051099 - 41050925
Alignment:
Q  233 ttataaataaagatgcagaggaaaagaaggggcattcagggattggaataaaggataggtagggagagaccaaactatcgaattcttggcggggagagaa 332  Q
    |||||||||| ||||||||||||||||  |   ||||||||||||| |||||||||||||||||||||||||| || | |||||||||| ||||| ||||    
T  41051099 ttataaataa-gatgcagaggaaaagacagat-attcagggattgggataaaggataggtagggagagaccaagctcttgaattcttggaggggacagaa 41051002  T
Q  333 ccaagacaat-tgaatttcttgagattgtattgtaat-attactattaggttat-attttgatctcagtttctatca 406  Q
    |||||||  |  |||||||||| |||| |||||| || |||||||| |  |||| |||||||| |||||||||||||    
T  41051001 ccaagactctcggaatttcttgggattctattgtgataattactataaatttataattttgatatcagtttctatca 41050925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 296 - 406
Target Start/End: Original strand, 19139374 - 19139484
Alignment:
Q  296 gagagaccaaactatcgaattcttggcggggagagaaccaagacaattgaatttcttgagattgtattgtaatattactattaggttatattttgatctc 395  Q
    |||| ||||| || || ||||||||| |||||||||||||||||  | |||||||||| |||| ||||||||| |||||||||| ||| |||||||| ||    
T  19139374 gagaaaccaagctctctaattcttggaggggagagaaccaagactctcgaatttcttgggattatattgtaatcttactattagtttaaattttgatatc 19139473  T
Q  396 agtttctatca 406  Q
    |||||||||||    
T  19139474 agtttctatca 19139484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 108 - 167
Target Start/End: Complemental strand, 39701896 - 39701837
Alignment:
Q  108 tgttagcaatatgactcgtaaggtcagaagttacagaatattagtacaatgtttatttaa 167  Q
    ||||||||||| ||||| ||||| |||||||||||||||||||||| | |||||||||||    
T  39701896 tgttagcaataggactcctaagggcagaagttacagaatattagtagattgtttatttaa 39701837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 108 - 167
Target Start/End: Complemental strand, 39703126 - 39703067
Alignment:
Q  108 tgttagcaatatgactcgtaaggtcagaagttacagaatattagtacaatgtttatttaa 167  Q
    ||||||||||| ||||| ||||| |||||||||||||||||||||| | |||||||||||    
T  39703126 tgttagcaataggactcctaagggcagaagttacagaatattagtagattgtttatttaa 39703067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 352
Target Start/End: Complemental strand, 35144613 - 35144554
Alignment:
Q  293 agggagagaccaaactatcgaattcttggcggggagagaaccaagacaattgaatttctt 352  Q
    |||||||||||||  | |||||||||||| |||||||||||||||||  | |||||||||    
T  35144613 agggagagaccaaggtctcgaattcttggaggggagagaaccaagactctcgaatttctt 35144554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 233 - 406
Target Start/End: Complemental strand, 211837 - 211666
Alignment:
Q  233 ttataaataaagatgcagaggaaaagaaggggcattcagggattggaataaaggataggtagggagagaccaaactatcgaattcttggcggggagagaa 332  Q
    |||||||||| |||||||| |||||||| ||  ||||||||||||| ||||||||| |||||||||||||||| || |||||| ||||| ||||||||||    
T  211837 ttataaataa-gatgcagaagaaaagaaaggt-attcagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaa 211740  T
Q  333 ccaagacaattgaatttcttgagattgtattgtaatattactattaggttatattttgatctcagtttctatca 406  Q
    |||||||  | |||||||||| |||||||||||||| |||||||||| |||||||||||| |||||| ||||||    
T  211739 ccaagactctcgaatttcttgggattgtattgtaatcttactattagtttatattttgatatcagttcctatca 211666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 233 - 406
Target Start/End: Complemental strand, 205760 - 205589
Alignment:
Q  233 ttataaataaagatgcagaggaaaagaaggggcattcagggattggaataaaggataggtagggagagaccaaactatcgaattcttggcggggagagaa 332  Q
    |||||||||| |||||||| |||||||| |   ||||||||||||| ||||||||| |||||||||||||||| || |||||| ||||| ||||||||||    
T  205760 ttataaataa-gatgcagaagaaaagaaagat-attcagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaa 205663  T
Q  333 ccaagacaattgaatttcttgagattgtattgtaatattactattaggttatattttgatctcagtttctatca 406  Q
    |||||||  | |||||||||| |||||||||||||| |||||||||| |||||||||||| |||||| ||||||    
T  205662 ccaagactctcgaatttcttgggattgtattgtaatcttactattagtttatattttgatatcagttcctatca 205589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 3e-43; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 233 - 406
Target Start/End: Original strand, 6081243 - 6081414
Alignment:
Q  233 ttataaataaagatgcagaggaaaagaaggggcattcagggattggaataaaggataggtagggagagaccaaactatcgaattcttggcggggagagaa 332  Q
    |||||||||| |||||||| |||||||| ||  ||||||||||||| ||||||||| |||||||||||||||| || |||||| ||||| ||||||||||    
T  6081243 ttataaataa-gatgcagaagaaaagaaaggt-attcagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaa 6081340  T
Q  333 ccaagacaattgaatttcttgagattgtattgtaatattactattaggttatattttgatctcagtttctatca 406  Q
    |||||||  | |||||||||| |||||||||||||| |||||||||| |||||||||||| |||||| ||||||    
T  6081341 ccaagactctcgaatttcttgggattgtattgtaatcttactattagtttatattttgatatcagttcctatca 6081414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 233 - 406
Target Start/End: Original strand, 6082450 - 6082621
Alignment:
Q  233 ttataaataaagatgcagaggaaaagaaggggcattcagggattggaataaaggataggtagggagagaccaaactatcgaattcttggcggggagagaa 332  Q
    |||||||||| |||||||| |||||||| ||  ||||||||||||| ||||||||| |||||||||||||||| || |||||| ||||| ||||||||||    
T  6082450 ttataaataa-gatgcagaagaaaagaaaggt-attcagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaa 6082547  T
Q  333 ccaagacaattgaatttcttgagattgtattgtaatattactattaggttatattttgatctcagtttctatca 406  Q
    |||||||  | |||||||||| |||||||||||||| |||||||||| |||||||||||| |||||| ||||||    
T  6082548 ccaagactctcgaatttcttgggattgtattgtaatcttactattagtttatattttgatatcagttcctatca 6082621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 293 - 406
Target Start/End: Original strand, 17901159 - 17901274
Alignment:
Q  293 agggagagaccaaactatcgaattcttggcggggagagaaccaagacaattgaatttcttgagattgtattgtaatattactattaggttata--ttttg 390  Q
    ||||||||||||| || |||||||||||| |||||||| ||||||||  | |||||||||| || | |||||||||||||||||||  |||||  |||||    
T  17901159 agggagagaccaagctctcgaattcttggaggggagagtaccaagactctcgaatttcttgggaatctattgtaatattactattaatttatatgttttg 17901258  T
Q  391 atctcagtttctatca 406  Q
    || |||||||||||||    
T  17901259 atatcagtttctatca 17901274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 292 - 403
Target Start/End: Original strand, 27021363 - 27021472
Alignment:
Q  292 tagggagagaccaaactatcgaattcttggcggggagagaaccaagacaattgaatttcttgagattgtattgtaatattactattaggttatattttga 391  Q
    |||||||||| ||| || |||||||||||  | |||| |||||| |||  | |||||||||| |||| ||||||||||||||||||| || |||||||||    
T  27021363 tagggagagatcaagctctcgaattcttgaagaggagggaaccaggac--tcgaatttcttgggattctattgtaatattactattaagtaatattttga 27021460  T
Q  392 tctcagtttcta 403  Q
    | ||||||||||    
T  27021461 tatcagtttcta 27021472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 171
Target Start/End: Original strand, 27021151 - 27021212
Alignment:
Q  110 ttagcaatatgactcgtaaggtcagaagttacagaatattagtacaatgtttatttaatata 171  Q
    |||| |||| ||||| ||||| ||||||||| | |||||||||| | |||||||||||||||    
T  27021151 ttagtaataggactcctaagggcagaagttatataatattagtaaattgtttatttaatata 27021212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 233 - 406
Target Start/End: Original strand, 40254447 - 40254616
Alignment:
Q  233 ttataaataaagatgcagaggaaaagaaggggcattcagggattggaataaaggataggtagggagagaccaaactatcgaattcttggcggggagagaa 332  Q
    |||||||||| ||||||||||||||||| ||  ||||||||||||| ||||||||| |||||||||||||||| || || ||||||||| ||||||||||    
T  40254447 ttataaataa-gatgcagaggaaaagaaagg--attcagggattgggataaaggattggtagggagagaccaagctctc-aattcttggaggggagagaa 40254542  T
Q  333 ccaagacaattgaatttcttgagattgtattgtaatattactattaggttatattttgatctcagtttctatca 406  Q
    |||||||  | |||||||||| |||| |||||||||||||||||||  |||||||||||| || ||||||||||    
T  40254543 ccaagactctcgaatttcttgggattctattgtaatattactattaatttatattttgatatctgtttctatca 40254616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 233 - 406
Target Start/End: Complemental strand, 2411231 - 2411061
Alignment:
Q  233 ttataaataaagatgcagaggaaaagaaggggcattcagggattggaataaaggataggtagggagagaccaaactatcgaattcttggcggggagagaa 332  Q
    ||||||| |||| |||||||||||| | ||||||||| |  ||| | ||||||||| |||||||||||||||| ||  ||||||| ||| ||||||||||    
T  2411231 ttataaacaaagttgcagaggaaaata-ggggcattcggttatttggataaaggattggtagggagagaccaagct--cgaattcctggaggggagagaa 2411135  T
Q  333 ccaagacaattgaatttcttgagattgtattgtaatattactattaggttatattttgatctcagtttctatca 406  Q
     ||||||  |  ||||||||| ||||  ||||||||||||||||||| |||||||||||| |||||||||||||    
T  2411134 tcaagactctcaaatttcttgggattcgattgtaatattactattagtttatattttgatatcagtttctatca 2411061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 294 - 399
Target Start/End: Original strand, 21661182 - 21661287
Alignment:
Q  294 gggagagaccaaactatcgaattcttggcggggagagaaccaagacaattgaatttcttgagattgtattgtaatattactattaggttatattttgatc 393  Q
    |||||||||||| || ||||||| |||| |||||||||||||||||  | |||||||||| || | ||||||||| |||||||||| ||||||||||||     
T  21661182 gggagagaccaagctctcgaattattggaggggagagaaccaagactctcgaatttcttgggaatatattgtaatcttactattagtttatattttgata 21661281  T
Q  394 tcagtt 399  Q
    ||||||    
T  21661282 tcagtt 21661287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 406
Target Start/End: Complemental strand, 26247043 - 26246968
Alignment:
Q  331 aaccaagacaattgaatttcttgagattgtattgtaatattactattaggttatattttgatctcagtttctatca 406  Q
    |||||||||  | |||||||||| |||| ||||||||| |||||||||| |||||||||||| |||||| ||||||    
T  26247043 aaccaagactctcgaatttcttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 26246968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 2411297 - 2411249
Alignment:
Q  183 agtaactgctatctgcagtaaaggttatctgccgaacttttatgtaact 231  Q
    |||||||||||||||||||||  |||||||||  |||||||||||||||    
T  2411297 agtaactgctatctgcagtaactgttatctgcaaaacttttatgtaact 2411249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 233 - 406
Target Start/End: Original strand, 12266 - 12437
Alignment:
Q  233 ttataaataaagatgcagaggaaaagaaggggcattcagggattggaataaaggataggtagggagagaccaaactatcgaattcttggcggggagagaa 332  Q
    |||||||||| ||||||||||||||||| |   ||||||||||||| |||||||||||||||||||||||||| || | ||| |||||| ||||||||||    
T  12266 ttataaataa-gatgcagaggaaaagaaagtt-attcagggattgggataaaggataggtagggagagaccaagctcttgaactcttggaggggagagaa 12363  T
Q  333 ccaagacaattgaatttcttgagattgtattgtaatattactattaggttatattttgatctcagtttctatca 406  Q
    |||||||  |  ||||||||| |||| |||||||||||||||||||| |||||||||||| | |||| ||||||    
T  12364 ccaagactctctaatttcttgggattatattgtaatattactattagtttatattttgatataagttcctatca 12437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 233 - 406
Target Start/End: Original strand, 11118 - 11289
Alignment:
Q  233 ttataaataaagatgcagaggaaaagaaggggcattcagggattggaataaaggataggtagggagagaccaaactatcgaattcttggcggggagagaa 332  Q
    |||||||||| |||||||| |||||||| |   ||||||||||||| ||||||||| |||||||||||||||| || |||||  |||||  |||||||||    
T  11118 ttataaataa-gatgcagaagaaaagaaagat-attcagggattgggataaaggattggtagggagagaccaagctctcgaaaacttggaagggagagaa 11215  T
Q  333 ccaagacaattgaatttcttgagattgtattgtaatattactattaggttatattttgatctcagtttctatca 406  Q
    |||||||  | |||||||||| |||| ||||||||| |||||||||| |||||||||||| |||||| ||||||    
T  11216 ccaagactctcgaatttcttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca 11289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 10972 - 11036
Alignment:
Q  108 tgttagcaatatgactcgtaaggtcagaagttacagaatattagtacaatgtttatttaatatat 172  Q
    |||||| |||| ||||| ||||| ||| ||||| |||||||||||| | ||||||||||||||||    
T  10972 tgttagtaataggactcctaagggcagcagttatagaatattagtagattgtttatttaatatat 11036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 4e-36; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 233 - 406
Target Start/End: Original strand, 33789921 - 33790095
Alignment:
Q  233 ttataaataaagatgcagaggaaaagaaggggcattcagggattggaataaaggataggtagggagagaccaaactatcgaattcttggcggggagagaa 332  Q
    |||||||||| ||||||||||||||||| ||  ||||||||||||| |||||||||||||||||||||||||| || || ||||||||| ||||||||||    
T  33789921 ttataaataa-gatgcagaggaaaagaaaggt-attcagggattgggataaaggataggtagggagagaccaagctctcaaattcttggaggggagagaa 33790018  T
Q  333 ccaagacaattgaatttcttgagat--tgtattgtaat-attactattaggttatattttgatctcagtttctatca 406  Q
    |||||||  | |||||||||| |||  | ||||||||| |||||||| |  |||||||||||| |||||||||||||    
T  33790019 ccaagactctcgaatttcttgggattatatattgtaataattactataaatttatattttgatatcagtttctatca 33790095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 233 - 406
Target Start/End: Original strand, 12324895 - 12325069
Alignment:
Q  233 ttataaataaagatgcagaggaaaagaaggggcattcagggattggaataaaggataggtagggagagaccaaactatcgaattcttggcggggagagaa 332  Q
    |||||||||| |||||| |||||||||| |   ||||||||||||  ||||||||| ||||||||||||||||||| ||||||| |||| ||||||||||    
T  12324895 ttataaataa-gatgcaaaggaaaagaaagct-attcagggattgcgataaaggattggtagggagagaccaaactctcgaatttttggaggggagagaa 12324992  T
Q  333 ccaagacaattgaatttcttgagat--tgtattgtaat-attactattaggttatattttgatctcagtttctatca 406  Q
    |||||||  | ||||| |||| |||  | ||||||||| |||||||| |  |||||||||||| |||||||||||||    
T  12324993 ccaagactctcgaattccttgggattatatattgtaataattactataaatttatattttgatatcagtttctatca 12325069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 231 - 331
Target Start/End: Original strand, 18955406 - 18955505
Alignment:
Q  231 tgttataaataaagatgcagaggaaaagaaggggcattcagggattggaataaaggataggtagggagagaccaaactatcgaattcttggcggggagag 330  Q
    |||||||||||||||||||||||||||||| | | |||| |  ||| | ||||||||| |||||||||||||||| || || |||||||||  |||||||    
T  18955406 tgttataaataaagatgcagaggaaaagaa-gagaattcggttatttggataaaggattggtagggagagaccaatctctctaattcttggaagggagag 18955504  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 3302515 - 3302576
Alignment:
Q  345 aatttcttgagattgtattgtaatattactattaggttatattttgatctcagtttctatca 406  Q
    |||||||||||||  ||||||| |||||||||||  || ||||||| | |||||||||||||    
T  3302515 aatttcttgagatcctattgtagtattactattaatttgtattttggtatcagtttctatca 3302576  T

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Target: scaffold0018 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 233 - 379
Target Start/End: Complemental strand, 178034 - 177890
Alignment:
Q  233 ttataaataaagatgcagaggaaaagaaggggcattcagggattggaataaaggataggtagggagagaccaaactatcgaattcttggcggggagagaa 332  Q
    |||||||||| ||||||||||||||||| ||  |||||||||||||  |||||||| |||||||||||||||| || |||||| ||||| ||||||||||    
T  178034 ttataaataa-gatgcagaggaaaagaaaggt-attcagggattggggtaaaggattggtagggagagaccaagctctcgaatacttggaggggagagaa 177937  T
Q  333 ccaagacaattgaatttcttgagattgtattgtaatattactattag 379  Q
    |||||||  | |||||||||| |||| ||||||||| |||| |||||    
T  177936 ccaagactctcgaatttcttgggattatattgtaatcttaccattag 177890  T

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