View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14684_high_17 (Length: 434)
Name: NF14684_high_17
Description: NF14684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14684_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 13 - 415
Target Start/End: Original strand, 39080670 - 39081078
Alignment:
| Q |
13 |
ataacatgatataggatgtacaaggaaaatgtgtgaaatatgtcattcataaataacaaacacaattttacctcatttaacgaccaatattatatgcagc |
112 |
Q |
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| T |
39080670 |
ataacatgatataggatgtacaaggaaaatgtg--aaatatgtcattcataaataacaaacacaattttacctcatttaacgaccaatgctatatgcagc |
39080767 |
T |
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| Q |
113 |
ataatttatgattgatatataagnnnnnnncaaagtgggagattctgatgcagtcatctccaaagggtactttcttatataaagacagaaaactca---- |
208 |
Q |
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| T |
39080768 |
ataattgatgattgatatataagaaaaaaacaaagtgggagattctgatgctgtcatctccaaagggtactttcttatataaagacagaaaactcatata |
39080867 |
T |
|
| Q |
209 |
gctcaaattttattgtgttgtaattctttttctttattactatattttctaattaataatgtcctcctaactcc---tgaaaaggaaaatttgttaacca |
305 |
Q |
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| T |
39080868 |
gctcaaattttattgtgttgtaattctttttctttattactatattttctaattaataatgtcctcctaactcctcctgaaaaggaaaatttgttaacta |
39080967 |
T |
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| Q |
306 |
attaatcagttatttatgtaatggtatactatcgagctccttaaccgtgtatgagttgacc-ttggaagaaagatgcctcatatatagggaattaactat |
404 |
Q |
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| T |
39080968 |
attaatcagttatttatgtaatggtatactatcgagctccttaaccgtgtatgagttgacctttggaagaaagatgcctcatatatagggaattaactat |
39081067 |
T |
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| Q |
405 |
agggtccctaa |
415 |
Q |
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| T |
39081068 |
agggtccctaa |
39081078 |
T |
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