View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14684_high_22 (Length: 386)
Name: NF14684_high_22
Description: NF14684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14684_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 30 - 374
Target Start/End: Complemental strand, 14977457 - 14977112
Alignment:
| Q |
30 |
catcagtgtaacattacaaacatgttcaaacgttgttagaatcgaaaatagaatctaccaaagaagtaaaaattgaaacttttaaggttttgaagcatgc |
129 |
Q |
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| T |
14977457 |
catcagtgtaacattacaaacatgttcaaacgttgttagaatcgaaaatagaatctaccaaagaagtaaaaattgaaacttttaaggttttgaagcatgc |
14977358 |
T |
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| Q |
130 |
ccattctgttacctttgaaaaatttcgacgagttccaccttctagatccataacatgcgaggtttttgaagtttcaaagaaccatg-nnnnnnnngtttt |
228 |
Q |
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| T |
14977357 |
ccattctgttacctttgaagaatttcgacgagttccaccttctagatccataacatgcgaggtttttgaagtttcaaagaaccatgtttttttttgtttt |
14977258 |
T |
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| Q |
229 |
ctggaacaaagaatttaaggtttttgttttgatgatgatcacccaattgctgcaactgaaactctcctagttgagaaaaaccgaattaaagatttagaaa |
328 |
Q |
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| T |
14977257 |
ctggaaccaagaatttaaggtttttgttttgatgatgatcacccaattgctgcaactgaaactctcctagttgagaaaaaccgaattaaagatttagaaa |
14977158 |
T |
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| Q |
329 |
gaaattatgattaaagatatgtatttatagtagtaccatatatatt |
374 |
Q |
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| T |
14977157 |
gaaattatgattaaagatatgtatttatagtagtaccatatatatt |
14977112 |
T |
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