View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14684_high_23 (Length: 378)
Name: NF14684_high_23
Description: NF14684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14684_high_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 8 - 361
Target Start/End: Original strand, 47709477 - 47709817
Alignment:
| Q |
8 |
gagcagagaaaactgataaacccaatacaagatgtgcaaggtgacctagaaagatatgatataggagagaaaactccaaacaaaacaagcaactgctaga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47709477 |
gagcagagaaaactgataaacccaatacaagatgtgcaaggtgacctagaaagatatgatataggagagaaaactccaaacaaaacaagcaactgctaga |
47709576 |
T |
|
| Q |
108 |
acagcagtgtgcaaggctgttgtgttggatggatccacagtcattgacaattcagaatatctttgaacaatatctacaacaagaaaatagcataccagaa |
207 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47709577 |
acagcagtttgcaaggctgttgtgttggatgga-------tcattgacaattcagaatatctttgaacaatatctacaacaagaaaatagcataccagaa |
47709669 |
T |
|
| Q |
208 |
agtc---taataatacatcaatagcagtcaatgtctttgaacaaattaacaatgaagaaaaattccttttacatgtttatttttgccctcaatcctaaac |
304 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47709670 |
agtctaataataatacatcaatagcagtcaatgtctttg--------aacaatgaagaaaaattccttttacatgtttatttttgccctcaatcctaaac |
47709761 |
T |
|
| Q |
305 |
atnnnnnnntgagtttatacatactttcaactccaaatctatccctagcttactttt |
361 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
47709762 |
at-aaaaaatgagtttatacatactttcaactccaaatctatccctagctaactttt |
47709817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 23033286 - 23033342
Alignment:
| Q |
109 |
cagcagtgtgcaaggctgttgtgttggatggatccacagtcattgacaattcagaat |
165 |
Q |
| |
|
|||| ||||| ||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23033286 |
cagctgtgtgtaaggcggtggtgttggatggatccacagtcattgacaattcagaat |
23033342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 162
Target Start/End: Original strand, 41066265 - 41066310
Alignment:
| Q |
117 |
tgcaaggctgttgtgttggatggatccacagtcattgacaattcag |
162 |
Q |
| |
|
||||| ||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
41066265 |
tgcaaagctgttgtgtttgatggatccactgtcattgacaattcag |
41066310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 18185010 - 18184970
Alignment:
| Q |
188 |
aagaaaatagcataccagaaagtctaataatacatcaatag |
228 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
18185010 |
aagaaaatagcataccagaaagtctgataatatatcaatag |
18184970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University