View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14684_high_26 (Length: 363)
Name: NF14684_high_26
Description: NF14684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14684_high_26 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 346
Target Start/End: Original strand, 14977491 - 14977819
Alignment:
| Q |
18 |
gcagaaagattcatggagaacagttctaacactagcatatcaaagtcttggagtagtttatggagatttaagcatttcacctttatatgtgtttagaagt |
117 |
Q |
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| T |
14977491 |
gcagaaagattcatggagaacagttctaacactagcatatcaaagtcttggagtagtttatggagatttaagcatttcacctttatatgtgtttagaagt |
14977590 |
T |
|
| Q |
118 |
acttttggtgaaggaattggacactcaaatacaaatgaagagatttatggtgttttgtctttggtgttttggtctgttacattagttcctttggttaaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
14977591 |
acttttggtgaaggaattggacactcaaatacaaatgaagagatttatggtgttttgtctctggtgttttggtctgttacattagttcctttggttaaat |
14977690 |
T |
|
| Q |
218 |
atgtgttcatagtgttaagagctgatgataatggtgaaggaggcacttttgcactttactctttgttgtgtagatatgctaaagttaattctcttcctaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14977691 |
atgtgttcatagtgttaagagctgatgataatggtgaaggaggcacttttgcactttactctttgttgtgtagatatgctaaagttaattctcttcctaa |
14977790 |
T |
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| Q |
318 |
ttgtcaattggctgatgaagaattgtctg |
346 |
Q |
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| T |
14977791 |
ttgtcaattggctgatgaagaattgtctg |
14977819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 194 - 346
Target Start/End: Original strand, 15027763 - 15027915
Alignment:
| Q |
194 |
ttacattagttcctttggttaaatatgtgttcatagtgttaagagctgatgataatggtgaaggaggcacttttgcactttactctttgttgtgtagata |
293 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
15027763 |
ttacattagtttctttggttaaatatgtgttcatagtgttaagagctgatgataatggtgaaggaggcacttttgcacttaactctttgttgtgtagata |
15027862 |
T |
|
| Q |
294 |
tgctaaagttaattctcttcctaattgtcaattggctgatgaagaattgtctg |
346 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15027863 |
tgctaaagttaattctcttcctaattgtcaattggctgatgaagaattgtctg |
15027915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 52 - 298
Target Start/End: Original strand, 1807871 - 1808117
Alignment:
| Q |
52 |
gcatatcaaagtcttggagtagtttatggagatttaagcatttcacctttatatgtgtttagaagtacttttggtgaaggaattggacactcaaatacaa |
151 |
Q |
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|||||||||||| | ||||| || |||||||||||||||| ||| || ||||||| | | ||| ||||||| ||| | |||| ||| ||| |||||| |
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| T |
1807871 |
gcatatcaaagtttaggagttgtgtatggagatttaagcacttctccactatatgtatacaaaagcacttttgctgaggatattgaacattcagatacaa |
1807970 |
T |
|
| Q |
152 |
atgaagagatttatggtgttttgtctttggtgttttggtctgttacattagttcctttggttaaatatgtgttcatagtgttaagagctgatgataatgg |
251 |
Q |
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||||||| || | |||||| |||||||| ||||||||| | | || || |||| | | |||||||||||||| ||||| ||||||||||||||||| |
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| T |
1807971 |
atgaagaaatctttggtgtattgtcttttgtgttttggacactaactttgattccacttctgaaatatgtgttcattgtgttgagagctgatgataatgg |
1808070 |
T |
|
| Q |
252 |
tgaaggaggcacttttgcactttactctttgttgtgtagatatgcta |
298 |
Q |
| |
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||||||||| |||||||| | ||||||||| | |||||| |||||| |
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| T |
1808071 |
tgaaggagggacttttgctttgtactctttgctatgtagacatgcta |
1808117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 86
Target Start/End: Original strand, 15385910 - 15385948
Alignment:
| Q |
48 |
actagcatatcaaagtcttggagtagtttatggagattt |
86 |
Q |
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||||||||||||||||||||| |||||||| |||||||| |
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| T |
15385910 |
actagcatatcaaagtcttggtgtagtttacggagattt |
15385948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 167
Target Start/End: Complemental strand, 42988527 - 42988415
Alignment:
| Q |
55 |
tatcaaagtcttggagtagtttatggagatttaagcatttcacctttatatgtgtttagaagtacttttggtgaaggaattggacactcaaatacaaatg |
154 |
Q |
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|||||||||||||| || || |||||||| || || ||||| || || ||||| || | ||| ||||||| ||||| |||| ||| ||| | || |||| |
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| T |
42988527 |
tatcaaagtcttggtgttgtatatggagacttgagtatttctccattgtatgttttcacaagcacttttgctgaagatattgaacattcagagactaatg |
42988428 |
T |
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| Q |
155 |
aagagatttatgg |
167 |
Q |
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||||||||||||| |
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| T |
42988427 |
aagagatttatgg |
42988415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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