View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14684_high_28 (Length: 345)
Name: NF14684_high_28
Description: NF14684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14684_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 44753942 - 44754270
Alignment:
| Q |
1 |
cctttgttagattcaattcaagctacaacaacaataaccaactaccaagatacccttcttccactcttagctttagttctcctgaatcaaatcccatgca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44753942 |
cctttgttagattcaattcaagctacaacaacaataaccaactaccaagatacccttcttccactcttagctttagttctcctgaatcaaatcccatgca |
44754041 |
T |
|
| Q |
101 |
ttggaatagcttcctcaattatgctactactcaaaatcaaccatttagtaataataggaacaataataacctaagcactttaaactttggtagacaaaac |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44754042 |
ttggaatagcttcctcaactatgctactactcaaaatcaaccatatagtaataataggaacaataataacctaagcactttaaactttggtagacaaaac |
44754141 |
T |
|
| Q |
201 |
acaatggaaagtatataccaaacctacatgcnnnnnnncaacaatagttcaaacatttcacaacatgtaggtttacaagatagtactatatctgcagcaa |
300 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44754142 |
acaatggaaagtatataccaaacctacatgcaaaaaaacaacaatagttcaaacatttcacaacatgtaggtttacaagatagtactatatctgcagcaa |
44754241 |
T |
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| Q |
301 |
caaaagctatcacagcagatccaactttt |
329 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
44754242 |
caaaagctatcacagcagatccaactttt |
44754270 |
T |
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