View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14684_high_29 (Length: 340)
Name: NF14684_high_29
Description: NF14684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14684_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 15 - 322
Target Start/End: Original strand, 23585971 - 23586280
Alignment:
| Q |
15 |
aagataacataaattttctatcaaaaagataaatataaaattaatcctattggtgcgttatataaagcgcacggttga----caatggcgcgggaaagcc |
110 |
Q |
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| T |
23585971 |
aagataacataaattttctatcaaaaa-ataa-tataaaattaatcctattggagcgttatataaagcgcacggttgatagccaatggcgcgggaaagcc |
23586068 |
T |
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| Q |
111 |
aatcaaagnnnnnnnnnnnnnnnnggcggtacgaaaactcaaaccaactacaacgcgtgtcctttcagaattttctcgaacgtgctagacaatgctagag |
210 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23586069 |
aatcaaagaaaaataaaatataaaggcggtacgaaaactcaaaccaactacaacgcgtgtcctttcagaattttctcgaacgtgctagacaatgctagag |
23586168 |
T |
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| Q |
211 |
aaatcccacaccctcaattcaaatttagatcaaatcgtcaccgtccaaattactcatccaacggctaaaaacactataccgaacattccagacatcaatc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23586169 |
aaatcccacaccctcaattcaaatttagatcaaatcgtcaccgtccaaattactcatccaacggctaaaaacactataccgaacattccagacatcaatc |
23586268 |
T |
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| Q |
311 |
ctgttctatatt |
322 |
Q |
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|||||||||||| |
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| T |
23586269 |
ctgttctatatt |
23586280 |
T |
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