View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14684_high_32 (Length: 330)
Name: NF14684_high_32
Description: NF14684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14684_high_32 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 311
Target Start/End: Complemental strand, 4192909 - 4192618
Alignment:
| Q |
18 |
cacagacacgaacaccagatgcgtcagctctggtaataatctgagaaaatggcataattgaatgtaatttcataagtgtctcggacacacctttgatcag |
117 |
Q |
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|||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
4192909 |
cacaaacacgaacaccagacgcgtcagctctggtaataatttgagaaaatggcataattgaatgtaatttcataagtgtgttggacacacctttgatcag |
4192810 |
T |
|
| Q |
118 |
aagtgttagtactacagagaatatgattcagaaacttattcctcaaatttcaactaaatcattaacagtatagagtcatggaagaaataacttaccccca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4192809 |
aagtgttagtactacagagaatatgattcagaaacttattcctcaaatttcaactaaatcattaacag--tagagtcatggaagaaataacttaccccca |
4192712 |
T |
|
| Q |
218 |
taacatcaccaagcttaacacgagtttgtctaggaggcttggattcctccacctcagatgcagaatccaaaatctgttctccttcagtttccgg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4192711 |
taacatcaccaagcttaacacgagtttgtctaggaggcttggattcctccacctcagatgcagaatccaaaatctgttctccttcagtttccgg |
4192618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 85
Target Start/End: Original strand, 8457929 - 8457967
Alignment:
| Q |
47 |
ctggtaataatctgagaaaatggcataattgaatgtaat |
85 |
Q |
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| T |
8457929 |
ctggtaataatttgagaaaatgacataattgaatgtaat |
8457967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 2976700 - 2976736
Alignment:
| Q |
49 |
ggtaataatctgagaaaatggcataattgaatgtaat |
85 |
Q |
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| T |
2976700 |
ggtaataatttgagaaaatgacataattgaatgtaat |
2976736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 85
Target Start/End: Original strand, 1502578 - 1502616
Alignment:
| Q |
47 |
ctggtaataatctgagaaaatggcataattgaatgtaat |
85 |
Q |
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||||||||||||| |||||||| |||||||||||||||| |
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| T |
1502578 |
ctggtaataatctaagaaaatgacataattgaatgtaat |
1502616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 85
Target Start/End: Complemental strand, 32166238 - 32166200
Alignment:
| Q |
47 |
ctggtaataatctgagaaaatggcataattgaatgtaat |
85 |
Q |
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||||||||||| |||||||||| |||||||||||||||| |
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| T |
32166238 |
ctggtaataatttgagaaaatgacataattgaatgtaat |
32166200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 29230071 - 29230112
Alignment:
| Q |
49 |
ggtaataatctgagaaaatggcataattgaatgtaatttcat |
90 |
Q |
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||||||||| |||||||||| |||||||||||||||| |||| |
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| T |
29230071 |
ggtaataatttgagaaaatgacataattgaatgtaatatcat |
29230112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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