View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14684_high_39 (Length: 302)

Name: NF14684_high_39
Description: NF14684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14684_high_39
NF14684_high_39
[»] chr2 (46 HSPs)
chr2 (1-302)||(2377211-2377512)
chr2 (1-120)||(9496024-9496148)
chr2 (5-120)||(12734862-12734982)
chr2 (1-73)||(19336945-19337017)
chr2 (11-119)||(18959079-18959192)
chr2 (1-65)||(12141702-12141766)
chr2 (5-111)||(38430046-38430157)
chr2 (1-119)||(45543074-45543196)
chr2 (1-112)||(33504381-33504498)
chr2 (5-120)||(2610750-2610870)
chr2 (5-120)||(25834840-25834960)
chr2 (5-120)||(28508840-28508960)
chr2 (25-120)||(43573130-43573230)
chr2 (26-120)||(227372-227471)
chr2 (26-120)||(3635323-3635422)
chr2 (15-120)||(12882045-12882155)
chr2 (37-125)||(9531595-9531688)
chr2 (28-120)||(30306217-30306314)
chr2 (5-121)||(31959683-31959804)
chr2 (5-70)||(39029743-39029808)
chr2 (11-64)||(45437010-45437063)
chr2 (1-120)||(8197541-8197665)
chr2 (1-120)||(8202301-8202425)
chr2 (9-65)||(32402666-32402722)
chr2 (1-65)||(33287579-33287643)
chr2 (13-65)||(37470193-37470245)
chr2 (1-73)||(42149712-42149784)
chr2 (1-117)||(45077885-45078008)
chr2 (1-64)||(9556430-9556493)
chr2 (86-121)||(17429298-17429333)
chr2 (11-65)||(6219133-6219187)
chr2 (1-59)||(26670926-26670984)
chr2 (1-63)||(26784402-26784464)
chr2 (3-65)||(37452286-37452348)
chr2 (72-125)||(4807829-4807882)
chr2 (72-121)||(12474926-12474975)
chr2 (72-121)||(38452685-38452734)
chr2 (83-120)||(42543480-42543517)
chr2 (17-57)||(11412881-11412921)
chr2 (72-120)||(12520062-12520110)
chr2 (72-120)||(17670702-17670750)
chr2 (1-73)||(23915745-23915817)
chr2 (88-120)||(25721364-25721396)
chr2 (72-120)||(38328370-38328418)
chr2 (28-119)||(39709202-39709298)
chr2 (72-120)||(41763043-41763091)
[»] chr3 (43 HSPs)
chr3 (1-121)||(45289090-45289215)
chr3 (1-120)||(49042094-49042219)
chr3 (11-120)||(54128547-54128661)
chr3 (1-73)||(36304124-36304196)
chr3 (5-120)||(48508397-48508517)
chr3 (1-65)||(49841774-49841838)
chr3 (5-120)||(53519742-53519862)
chr3 (1-123)||(15296065-15296192)
chr3 (3-65)||(29601052-29601114)
chr3 (25-121)||(40106619-40106720)
chr3 (5-120)||(12096705-12096825)
chr3 (1-65)||(39600741-39600805)
chr3 (13-73)||(40116390-40116450)
chr3 (5-120)||(52156084-52156204)
chr3 (26-120)||(5169015-5169114)
chr3 (32-120)||(45374477-45374570)
chr3 (1-61)||(19162652-19162711)
chr3 (1-112)||(19676089-19676205)
chr3 (1-65)||(19758045-19758109)
chr3 (16-64)||(38431021-38431069)
chr3 (13-73)||(40116520-40116580)
chr3 (15-59)||(44571599-44571643)
chr3 (1-65)||(50960697-50960761)
chr3 (5-120)||(52138962-52139082)
chr3 (26-120)||(2133612-2133711)
chr3 (12-122)||(11284157-11284272)
chr3 (26-120)||(38060897-38060996)
chr3 (1-64)||(50237695-50237758)
chr3 (18-65)||(55244453-55244500)
chr3 (11-65)||(37779045-37779099)
chr3 (43-120)||(45486849-45486931)
chr3 (83-120)||(23610932-23610969)
chr3 (72-121)||(31566160-31566209)
chr3 (5-70)||(35033308-35033373)
chr3 (24-65)||(39208789-39208830)
chr3 (1-65)||(19737142-19737206)
chr3 (1-41)||(26490473-26490513)
chr3 (86-122)||(27192471-27192507)
chr3 (1-73)||(29475844-29475916)
chr3 (1-65)||(39235296-39235360)
chr3 (72-120)||(39512777-39512825)
chr3 (1-37)||(46431767-46431803)
chr3 (72-120)||(50249611-50249659)
[»] chr7 (49 HSPs)
chr7 (1-121)||(40979927-40980052)
chr7 (11-120)||(36101777-36101891)
chr7 (11-65)||(37976403-37976457)
chr7 (1-62)||(28542007-28542068)
chr7 (1-117)||(28627936-28628057)
chr7 (1-73)||(1569174-1569246)
chr7 (5-120)||(27648942-27649062)
chr7 (1-73)||(38135265-38135337)
chr7 (15-120)||(9210704-9210814)
chr7 (16-65)||(5577547-5577596)
chr7 (5-120)||(11594122-11594242)
chr7 (1-65)||(21517440-21517504)
chr7 (1-120)||(27893563-27893687)
chr7 (6-121)||(33731997-33732115)
chr7 (1-73)||(36239848-36239920)
chr7 (5-120)||(43281836-43281956)
chr7 (5-120)||(45836482-45836602)
chr7 (26-120)||(2885722-2885821)
chr7 (30-120)||(28208328-28208423)
chr7 (11-73)||(36136932-36136994)
chr7 (15-116)||(42969870-42969976)
chr7 (5-120)||(12841275-12841395)
chr7 (5-120)||(22349782-22349902)
chr7 (5-120)||(29650546-29650666)
chr7 (1-65)||(35922411-35922475)
chr7 (5-120)||(39906372-39906492)
chr7 (11-70)||(21078085-21078144)
chr7 (1-59)||(24549754-24549812)
chr7 (72-118)||(46355858-46355904)
chr7 (11-65)||(47848841-47848895)
chr7 (25-110)||(47852269-47852359)
chr7 (83-120)||(20899416-20899453)
chr7 (86-119)||(30914503-30914536)
chr7 (72-117)||(39812172-39812217)
chr7 (72-121)||(48919346-48919395)
chr7 (25-73)||(2882788-2882836)
chr7 (1-65)||(5418225-5418288)
chr7 (72-120)||(5418308-5418356)
chr7 (1-65)||(12966174-12966238)
chr7 (1-65)||(14057636-14057700)
chr7 (1-65)||(14367664-14367728)
chr7 (72-120)||(31005439-31005487)
chr7 (72-120)||(31682602-31682650)
chr7 (72-120)||(31869102-31869150)
chr7 (3-55)||(32368407-32368459)
chr7 (11-110)||(33103094-33103198)
chr7 (72-120)||(37618179-37618227)
chr7 (72-120)||(43491542-43491590)
chr7 (5-61)||(45601638-45601694)
[»] chr8 (31 HSPs)
chr8 (11-120)||(490503-490617)
chr8 (14-123)||(29520820-29520934)
chr8 (13-73)||(43904717-43904777)
chr8 (24-123)||(45419416-45419520)
chr8 (11-65)||(30559861-30559915)
chr8 (12-120)||(2216456-2216568)
chr8 (12-118)||(16917352-16917462)
chr8 (15-120)||(31715992-31716104)
chr8 (25-121)||(35914600-35914701)
chr8 (5-120)||(11523723-11523843)
chr8 (5-120)||(25473403-25473523)
chr8 (1-112)||(45041324-45041439)
chr8 (1-71)||(17491708-17491778)
chr8 (11-120)||(23492202-23492316)
chr8 (13-122)||(44529395-44529509)
chr8 (4-61)||(35643670-35643727)
chr8 (1-120)||(5908804-5908928)
chr8 (1-61)||(33827821-33827881)
chr8 (1-73)||(36069760-36069832)
chr8 (5-120)||(36545311-36545431)
chr8 (5-73)||(38391945-38392013)
chr8 (5-120)||(42469727-42469847)
chr8 (5-58)||(12966381-12966434)
chr8 (1-73)||(16705905-16705978)
chr8 (53-120)||(1928587-1928659)
chr8 (1-65)||(9904942-9905006)
chr8 (72-120)||(14742082-14742130)
chr8 (1-65)||(28169550-28169614)
chr8 (1-73)||(35362702-35362774)
chr8 (1-65)||(41971850-41971914)
chr8 (25-65)||(42584541-42584581)
[»] chr1 (51 HSPs)
chr1 (15-120)||(41560401-41560511)
chr1 (3-120)||(11941580-11941702)
chr1 (1-119)||(29128941-29129065)
chr1 (1-120)||(8796367-8796491)
chr1 (14-120)||(4707221-4707331)
chr1 (1-108)||(36623897-36624008)
chr1 (29-125)||(38807666-38807767)
chr1 (5-120)||(25979231-25979351)
chr1 (16-109)||(19908046-19908144)
chr1 (5-121)||(49347392-49347513)
chr1 (1-117)||(52532619-52532740)
chr1 (11-119)||(52561590-52561703)
chr1 (5-121)||(52921242-52921363)
chr1 (5-120)||(1210907-1211027)
chr1 (2-62)||(10200369-10200429)
chr1 (1-65)||(27520267-27520331)
chr1 (33-120)||(28090694-28090786)
chr1 (5-120)||(30202130-30202250)
chr1 (5-120)||(37311755-37311875)
chr1 (1-65)||(40416529-40416593)
chr1 (1-65)||(43375658-43375722)
chr1 (4-117)||(42501269-42501387)
chr1 (14-118)||(37462878-37462986)
chr1 (4-73)||(52878351-52878420)
chr1 (1-65)||(3818916-3818980)
chr1 (2-62)||(6025764-6025824)
chr1 (1-65)||(7762497-7762561)
chr1 (1-65)||(29577203-29577266)
chr1 (1-120)||(32404527-32404650)
chr1 (5-73)||(39318291-39318359)
chr1 (5-60)||(4001520-4001575)
chr1 (18-73)||(6084150-6084205)
chr1 (1-36)||(8676954-8676989)
chr1 (18-65)||(13827640-13827687)
chr1 (43-121)||(21769710-21769793)
chr1 (19-121)||(25715325-25715432)
chr1 (5-70)||(8672080-8672145)
chr1 (1-66)||(10569130-10569195)
chr1 (71-120)||(37099762-37099811)
chr1 (87-120)||(37430420-37430453)
chr1 (1-117)||(39140673-39140794)
chr1 (26-122)||(40568408-40568509)
chr1 (12-65)||(40920589-40920642)
chr1 (36-120)||(44941776-44941865)
chr1 (88-121)||(50771554-50771587)
chr1 (13-65)||(990518-990570)
chr1 (1-73)||(9599446-9599518)
chr1 (1-73)||(19936618-19936690)
chr1 (72-120)||(29577486-29577534)
chr1 (72-120)||(42539212-42539260)
chr1 (72-120)||(43481798-43481846)
[»] chr4 (52 HSPs)
chr4 (4-120)||(55007907-55008028)
chr4 (1-119)||(26037506-26037629)
chr4 (16-120)||(34208269-34208378)
chr4 (5-121)||(48622542-48622663)
chr4 (1-120)||(25574982-25575106)
chr4 (1-73)||(27049229-27049301)
chr4 (1-120)||(31959814-31959938)
chr4 (3-118)||(55388213-55388333)
chr4 (1-119)||(26024851-26024974)
chr4 (26-120)||(39100536-39100635)
chr4 (1-117)||(31459152-31459273)
chr4 (5-120)||(1777017-1777137)
chr4 (1-65)||(30621261-30621325)
chr4 (1-61)||(31043230-31043290)
chr4 (1-120)||(35690429-35690553)
chr4 (1-120)||(37488249-37488373)
chr4 (5-112)||(39708595-39708707)
chr4 (5-120)||(52569515-52569635)
chr4 (1-73)||(56439623-56439695)
chr4 (1-64)||(45204900-45204963)
chr4 (26-120)||(47265195-47265294)
chr4 (11-73)||(53518375-53518437)
chr4 (1-70)||(42639075-42639144)
chr4 (5-120)||(8286601-8286721)
chr4 (5-120)||(21528450-21528570)
chr4 (13-65)||(26510558-26510610)
chr4 (1-73)||(49987566-49987638)
chr4 (1-65)||(51421888-51421952)
chr4 (1-69)||(55768555-55768623)
chr4 (1-69)||(55832811-55832879)
chr4 (18-73)||(5306471-5306526)
chr4 (18-65)||(31339699-31339746)
chr4 (11-65)||(41192229-41192283)
chr4 (256-302)||(54980315-54980361)
chr4 (5-70)||(21237020-21237085)
chr4 (1-117)||(37042667-37042788)
chr4 (26-71)||(41729504-41729549)
chr4 (1-65)||(47147531-47147593)
chr4 (87-120)||(48451073-48451106)
chr4 (71-120)||(56130403-56130452)
chr4 (72-120)||(436463-436511)
chr4 (1-65)||(21107150-21107214)
chr4 (72-120)||(30634106-30634154)
chr4 (1-73)||(34233076-34233148)
chr4 (1-64)||(40420275-40420336)
chr4 (72-120)||(43434158-43434206)
chr4 (1-65)||(44384988-44385052)
chr4 (72-120)||(45209205-45209253)
chr4 (72-120)||(46153942-46153990)
chr4 (1-65)||(47372809-47372873)
chr4 (72-120)||(50238615-50238663)
chr4 (72-120)||(50238701-50238749)
[»] chr5 (31 HSPs)
chr5 (11-73)||(418086-418148)
chr5 (5-120)||(13561386-13561506)
chr5 (11-65)||(14667939-14667993)
chr5 (5-121)||(3302006-3302127)
chr5 (13-120)||(11675699-11675812)
chr5 (5-120)||(2915496-2915615)
chr5 (1-65)||(9235205-9235269)
chr5 (1-65)||(17340496-17340560)
chr5 (5-120)||(29816544-29816664)
chr5 (5-112)||(38685129-38685241)
chr5 (34-120)||(18855798-18855889)
chr5 (11-123)||(43557830-43557947)
chr5 (5-116)||(1287583-1287699)
chr5 (5-120)||(4496546-4496666)
chr5 (1-73)||(6889151-6889223)
chr5 (1-65)||(12576920-12576984)
chr5 (25-120)||(32442126-32442225)
chr5 (72-120)||(36551380-36551428)
chr5 (26-112)||(5558324-5558415)
chr5 (50-120)||(38132543-38132618)
chr5 (11-54)||(41894234-41894277)
chr5 (86-120)||(9460828-9460862)
chr5 (1-120)||(5303602-5303729)
chr5 (72-120)||(408494-408542)
chr5 (72-120)||(2645224-2645272)
chr5 (1-61)||(14725676-14725736)
chr5 (1-61)||(23980102-23980162)
chr5 (1-37)||(28186863-28186899)
chr5 (86-122)||(32489294-32489330)
chr5 (1-65)||(35615441-35615505)
chr5 (27-120)||(38830504-38830601)
[»] chr6 (24 HSPs)
chr6 (26-120)||(12890758-12890857)
chr6 (5-120)||(34505-34625)
chr6 (1-65)||(9593768-9593832)
chr6 (14-121)||(9706941-9707053)
chr6 (5-120)||(34143765-34143885)
chr6 (5-120)||(34156381-34156501)
chr6 (10-120)||(3206459-3206574)
chr6 (11-121)||(5096002-5096117)
chr6 (1-121)||(31818689-31818814)
chr6 (26-122)||(34934828-34934929)
chr6 (1-65)||(5897615-5897679)
chr6 (1-73)||(14389213-14389285)
chr6 (1-65)||(24665969-24666033)
chr6 (5-120)||(28085538-28085658)
chr6 (1-64)||(1748006-1748069)
chr6 (1-58)||(43119-43176)
chr6 (16-73)||(9568872-9568929)
chr6 (5-117)||(30031418-30031535)
chr6 (5-70)||(32756083-32756148)
chr6 (1-73)||(8364714-8364786)
chr6 (5-61)||(10098958-10099014)
chr6 (72-120)||(12133902-12133950)
chr6 (86-118)||(20864835-20864867)
chr6 (72-120)||(33730199-33730247)
[»] scaffold0570 (1 HSPs)
scaffold0570 (5-120)||(948-1068)
[»] scaffold0041 (1 HSPs)
scaffold0041 (5-121)||(16740-16861)
[»] scaffold0025 (1 HSPs)
scaffold0025 (11-73)||(39487-39549)
[»] scaffold0180 (1 HSPs)
scaffold0180 (1-65)||(25503-25568)
[»] scaffold0279 (1 HSPs)
scaffold0279 (1-37)||(17697-17733)
[»] scaffold0168 (1 HSPs)
scaffold0168 (72-120)||(28889-28937)
[»] scaffold0018 (1 HSPs)
scaffold0018 (72-120)||(31702-31750)
[»] scaffold0010 (1 HSPs)
scaffold0010 (1-73)||(160376-160448)


Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 46)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 2377211 - 2377512
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaatccatgtcgtcggccccacttagtgaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2377211 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaatccatgtcgtcggccccacttagtgaga 2377310  T
Q  101 taaggcttggttattgttgtagtgtccccctcaacttaccaactgagctacctggttggaaagatgagatttgtgttcaaataatgcagtgtcaattttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2377311 taaggcttggttattgttgtagtgtccccctcaacttaccaactgagctacctggttggaaagatgagatttgtgttcaaataatgcagtgtcaattttt 2377410  T
Q  201 aaacttaacattagatatacatataggtctcatttttcagttttctgcatacagttggacaaagcttctgttcttggaaaagctataaggtacttaaagc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  2377411 aaacttaacattagatatacatataggtctcatttttcagttttctgcatacagatggacaaagcttctgttcttggagaagctataaggtacttaaagc 2377510  T
Q  301 aa 302  Q
    ||    
T  2377511 aa 2377512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 9496024 - 9496148
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttag 95  Q
    ||||||| | ||||||||||||  ||||||||||||||||| |||||| |||||||||||||||| |||||     |||||||| | |  ||||||||||    
T  9496024 aactattcagaaagatttagaggttaatgagttggatccaaatatggtttatgatagaacattatggcgtaatttgatccatgtagccaaccccacttag 9496123  T
Q  96 tgagataaggcttggttattgttgt 120  Q
    || || ||||||||||| |||||||    
T  9496124 tgggacaaggcttggttgttgttgt 9496148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 12734862 - 12734982
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttagtgag 99  Q
    |||| ||| |||||||||   |||||||||||||||| |||||| |||||||||||| ||| | |||     |||||||| |||| |||||||||||| |    
T  12734862 attagaaaggatttagaggtcaatgagttggatccaaatatggtttatgatagaacactatggtgtaatttgatccatgtagtcgaccccacttagtggg 12734961  T
Q  100 ataaggcttggttattgttgt 120  Q
    ||||||||||||| |||||||    
T  12734962 ataaggcttggttgttgttgt 12734982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 19337017 - 19336945
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat 73  Q
    |||||| || ||||||||||||| |||||||||||||| || |||||| |||||||||||||||| |||||||    
T  19337017 aactataaagaaagatttagagattaatgagttggatcgaaatatggtttatgatagaacattatggcgtaat 19336945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 11 - 119
Target Start/End: Original strand, 18959079 - 18959192
Alignment:
Q  11 aaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttagtgagataagg 105  Q
    ||||| || |||| |||||||||||||| || |||||| |||||||||||||||| || ||     |||||||| |  | |||||||||||| |||||||    
T  18959079 aaagacttggagattaatgagttggatcaaaatatggtctatgatagaacattatggcataatttgatccatgtagctgaccccacttagtgggataagg 18959178  T
Q  106 cttggttattgttg 119  Q
    ||||||||||||||    
T  18959179 cttggttattgttg 18959192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 12141702 - 12141766
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    ||||||||  ||||| ||||||| |||||| |||||||||| |||||||||||||||||||||||    
T  12141702 aactattaggaaagacttagagattaatgacttggatccaaatatggtatatgatagaacattat 12141766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 111
Target Start/End: Original strand, 38430046 - 38430157
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcg-----taatccatgtcgtcggccccacttagtgag 99  Q
    |||| |||||||||||||   |||||||||||||||| |||||| | |||||||||| ||| |||     | |||||||| | || ||||||||||||||    
T  38430046 attagaaaagatttagaggtcaatgagttggatccaaatatggtttttgatagaacactatggcgtcatttgatccatgtagccgaccccacttagtgag 38430145  T
Q  100 ataaggcttggt 111  Q
    ||||||||||||    
T  38430146 ataaggcttggt 38430157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 45543196 - 45543074
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttag 95  Q
    |||||||| |||||||||||||  ||||||||| ||||||| |||||| |||||||||||||||| |||||     ||| |||| | || ||||||||||    
T  45543196 aactattagaaaagatttagagg-taatgagttcgatccaaatatggtttatgatagaacattatggcgtactttgatctatgtagccgaccccacttag 45543098  T
Q  96 tgagataaggcttggttattgttg 119  Q
    || ||||| ||||| || ||||||    
T  45543097 tgggataatgcttgcttgttgttg 45543074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 33504381 - 33504498
Alignment:
Q  1 aactattaaaaaagatttagagaat-aatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccactta 94  Q
    ||||||||| |||||| |||||| | ||| ||||||||  || ||||||||||||||||||||||| |||||     |||||| | | || |||||||||    
T  33504381 aactattaagaaagatctagagatttaataagttggattgaaatatggtatatgatagaacattatggcgtaatttgatccatctagccgaccccactta 33504480  T
Q  95 gtgagataaggcttggtt 112  Q
    ||| ||||||||||||||    
T  33504481 gtgggataaggcttggtt 33504498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 2610750 - 2610870
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgag 99  Q
    |||| ||| |||||||||   |||||||||||||||| | |||| |||||||||||| ||| |||| ||     ||||||   || ||||||||||||||    
T  2610750 attagaaaggatttagaggtcaatgagttggatccaaatttggtgtatgatagaacactatggcgttatttgatccatgtaaccgaccccacttagtgag 2610849  T
Q  100 ataaggcttggttattgttgt 120  Q
    ||||||||||||| |||||||    
T  2610850 ataaggcttggttgttgttgt 2610870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 25834840 - 25834960
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcg-----taatccatgtcgtcggccccacttagtgag 99  Q
    |||| ||| |||||||||   |||||||||||||||| |||||| |||||||||||| | | |||     | |||||||| | || |||||||||||| |    
T  25834840 attagaaaggatttagaggtcaatgagttggatccaaatatggtttatgatagaacactgtggcgtcatttgatccatgtagccgaccccacttagtggg 25834939  T
Q  100 ataaggcttggttattgttgt 120  Q
    ||||||||||||| |||||||    
T  25834940 ataaggcttggttgttgttgt 25834960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 28508840 - 28508960
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgag 99  Q
    |||| ||| |||||||||   |||||||||||||||| | |||| |||||||||||| ||| |||| ||     |||||| | || |||||||||||| |    
T  28508840 attagaaaggatttagaggtcaatgagttggatccaaatttggtttatgatagaacactatggcgtcatttgatccatgtagccgaccccacttagtggg 28508939  T
Q  100 ataaggcttggttattgttgt 120  Q
    ||||||||||||| |||||||    
T  28508940 ataaggcttggttgttgttgt 28508960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 120
Target Start/End: Complemental strand, 43573230 - 43573130
Alignment:
Q  25 taatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgagataaggcttggttattgttg 119  Q
    ||||||||||||||||| |||| | |||||| |||| |||| |||||||     |||||| | || |||||||||||| |||||||||||||| ||||||    
T  43573230 taatgagttggatccaaatatgatttatgatcgaacgttatggcgtaatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttg 43573131  T
Q  120 t 120  Q
    |    
T  43573130 t 43573130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 227372 - 227471
Alignment:
Q  26 aatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||||||||||| | |||| |||||||||||| ||| |||| ||     |||||| | || |||||||||||| |||||||||||||| |||||||    
T  227372 aatgagttggatccaaatttggtgtatgatagaacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 227471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 3635422 - 3635323
Alignment:
Q  26 aatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||||||||||| |||||| | |||||||||| ||| |||| ||     |||||| | || |||||||||||| |||||||||||||| |||||||    
T  3635422 aatgagttggatccaaatatggtttttgatagaacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 3635323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 120
Target Start/End: Complemental strand, 12882155 - 12882045
Alignment:
Q  15 atttagagaataatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttagtgagataaggcttg 109  Q
    ||||||||  ||||||||||||||||| |||||| | |||||||||||| | |||||     |||||||| | |  || ||||||||| |||||||||||    
T  12882155 atttagaggttaatgagttggatccaaatatggtttgtgatagaacattttggcgtaatttgatccatgtagcctacctcacttagtgggataaggcttg 12882056  T
Q  110 gttattgttgt 120  Q
    ||| |||||||    
T  12882055 gttgttgttgt 12882045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 125
Target Start/End: Complemental strand, 9531688 - 9531595
Alignment:
Q  37 tccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgagataaggcttggttattgttgtagtgt 125  Q
    ||||| |||||| |||||| ||||||||| |||||||     |||||| | || |||||||||||| |||||||||||||| ||||||| ||||    
T  9531688 tccaaatatggtttatgatggaacattatggcgtaatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgttgtgt 9531595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 120
Target Start/End: Original strand, 30306217 - 30306314
Alignment:
Q  28 tgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||||||||| | |||| |||||||||||| ||| |||| ||     |||||| | || |||||||||||| |||||||||||||| |||||||    
T  30306217 tgagttggatccaaatttggtttatgatagaacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 30306314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 121
Target Start/End: Original strand, 31959683 - 31959804
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttagtgag 99  Q
    |||| ||| |||||||||   |||||||||||||||| |||||| |||||||||||| ||| || ||     |||||||| |  | |||||||||||  |    
T  31959683 attagaaaggatttagaggtcaatgagttggatccaaatatggtttatgatagaacactatggcataatttgatccatgtagcagaccccacttagtagg 31959782  T
Q  100 ataaggcttggttattgttgta 121  Q
    ||||||||||||| ||||||||    
T  31959783 ataaggcttggttgttgttgta 31959804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 39029743 - 39029808
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgt 70  Q
    |||| |||||||||||||   |||||||||||||||| |||||| | |||||||||||||| ||||    
T  39029743 attagaaaagatttagaggtcaatgagttggatccaaatatggtttttgatagaacattatggcgt 39029808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 45437010 - 45437063
Alignment:
Q  11 aaagatttagagaataatgagttggatccaactatggtatatgatagaacatta 64  Q
    ||||||||||||| |||||  |||||||||| |||||||| |||||||||||||    
T  45437010 aaagatttagagattaatgcattggatccaaatatggtatttgatagaacatta 45437063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 8197665 - 8197541
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcg-----taatccatgtcgtcggccccacttag 95  Q
    ||||||||| |||||| || ||| |||||||||||||  || |||| |||||||||||| ||||| |||     | |||||||| | || ||| ||||||    
T  8197665 aactattaagaaagatctaaagattaatgagttggatagaaatatgatatatgatagaatattatggcgtcgtttgatccatgtagccgaccctacttag 8197566  T
Q  96 tgagataaggcttggttattgttgt 120  Q
    || ||||| |||||||| |||||||    
T  8197565 tgggataatgcttggttgttgttgt 8197541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 8202425 - 8202301
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcg-----taatccatgtcgtcggccccacttag 95  Q
    ||||||||| |||||| || ||| |||||||||||||  || |||| |||||||||||| ||||| |||     | |||||||| | || ||| ||||||    
T  8202425 aactattaagaaagatctaaagattaatgagttggatagaaatatgatatatgatagaatattatggcgtcgtttgatccatgtagccgaccctacttag 8202326  T
Q  96 tgagataaggcttggttattgttgt 120  Q
    || ||||| |||||||| |||||||    
T  8202325 tgggataatgcttggttgttgttgt 8202301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 32402666 - 32402722
Alignment:
Q  9 aaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    |||||||| |||||| |||||||||||||  || || ||||||||||||||||||||    
T  32402666 aaaaagatctagagattaatgagttggatagaaataaggtatatgatagaacattat 32402722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 33287579 - 33287643
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    ||||||||| |||||| |||| | ||||||||| |||| || |||||| ||||||||||||||||    
T  33287579 aactattaagaaagatctagaaattaatgagttagatcgaaatatggtttatgatagaacattat 33287643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 37470245 - 37470193
Alignment:
Q  13 agatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    |||| |||||| |||||||||||||| || ||||| |||||||||||||||||    
T  37470245 agatctagagattaatgagttggatcgaaatatggcatatgatagaacattat 37470193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 42149784 - 42149712
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat 73  Q
    ||||||||| |||||| |||||| || |||| |||||  || |||||| |||||||||||||||| |||||||    
T  42149784 aactattaagaaagatctagagattattgagctggatagaaatatggtttatgatagaacattatggcgtaat 42149712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 45077885 - 45078008
Alignment:
Q  1 aactattaaaaaagatttagagaataat--gagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccactt 93  Q
    ||||||||| ||||||||||||| ||||  |||||||||| || ||| || ||||||||||||| || || ||     ||||||||   || ||||||||    
T  45077885 aactattaagaaagatttagagattaatgagagttggatcgaaatatagtttatgatagaacataatggcataatttgatccatgtaaccgaccccactt 45077984  T
Q  94 agtgagataaggcttggttattgt 117  Q
    |||||||||| |||||||| ||||    
T  45077985 agtgagataaagcttggttgttgt 45078008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 9556493 - 9556430
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacatta 64  Q
    ||||||||| |||||| ||| || |||||||||||||| |  |||||| |||||||||||||||    
T  9556493 aactattaagaaagatctagtgattaatgagttggatcaagatatggtttatgatagaacatta 9556430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 121
Target Start/End: Original strand, 17429298 - 17429333
Alignment:
Q  86 ccccacttagtgagataaggcttggttattgttgta 121  Q
    ||||||||||||||||||||||||||| ||||||||    
T  17429298 ccccacttagtgagataaggcttggttgttgttgta 17429333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 6219133 - 6219187
Alignment:
Q  11 aaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    ||||||||||||| || ||||||||| | || |||||| ||||||||||||||||    
T  6219133 aaagatttagagattagtgagttggaccgaaatatggtttatgatagaacattat 6219187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 26670926 - 26670984
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaa 59  Q
    ||||||||| ||||||||||||| |||||||||||| | || |||| | ||||||||||    
T  26670926 aactattaagaaagatttagagattaatgagttggaccaaaatatgatttatgatagaa 26670984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 26784464 - 26784402
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacatt 63  Q
    ||||||||| |||||| |||||| |||||||||| ||  || |||||||||||||| ||||||    
T  26784464 aactattaagaaagatatagagattaatgagttgaatagaaatatggtatatgataaaacatt 26784402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 37452348 - 37452286
Alignment:
Q  3 ctattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    ||||||| ||||| ||||||| ||||||||||||   || |||||| ||||||||||||||||    
T  37452348 ctattaagaaagaattagagattaatgagttggacagaaatatggtttatgatagaacattat 37452286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 4807829 - 4807882
Alignment:
Q  72 atccatgtcgtcggccccacttagtgagataaggcttggttattgttgtagtgt 125  Q
    |||||||| | || |||||||||||| |||||||||||||| ||||||| ||||    
T  4807829 atccatgtagccgaccccacttagtgggataaggcttggttgttgttgttgtgt 4807882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 12474975 - 12474926
Alignment:
Q  72 atccatgtcgtcggccccacttagtgagataaggcttggttattgttgta 121  Q
    |||||||| | || |||||||||||| |||||||||||||| ||||||||    
T  12474975 atccatgtagccgaccccacttagtgggataaggcttggttgttgttgta 12474926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 38452734 - 38452685
Alignment:
Q  72 atccatgtcgtcggccccacttagtgagataaggcttggttattgttgta 121  Q
    |||||||| | || |||||||||||| |||||||||||||| ||||||||    
T  38452734 atccatgtagccgaccccacttagtgggataaggcttggttgttgttgta 38452685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 120
Target Start/End: Original strand, 42543480 - 42543517
Alignment:
Q  83 cggccccacttagtgagataaggcttggttattgttgt 120  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  42543480 cggccccacttagtgggataaggcttggttgttgttgt 42543517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 11412881 - 11412921
Alignment:
Q  17 ttagagaataatgagttggatccaactatggtatatgatag 57  Q
    ||||||| ||||||||||||||||| |||||| ||||||||    
T  11412881 ttagagattaatgagttggatccaaatatggtttatgatag 11412921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 12520110 - 12520062
Alignment:
Q  72 atccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||| | || |||||||||||| |||||||||||||| |||||||    
T  12520110 atccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 12520062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 17670702 - 17670750
Alignment:
Q  72 atccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||| | || |||||||||||| |||||||||||||| |||||||    
T  17670702 atccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 17670750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 23915817 - 23915745
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat 73  Q
    ||||||||| ||| || |||||| ||||||| ||||   ||||||||| |||||||||||| ||| |||||||    
T  23915817 aactattaagaaaaatctagagattaatgaggtggacagaactatggtttatgatagaacactatggcgtaat 23915745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 120
Target Start/End: Complemental strand, 25721396 - 25721364
Alignment:
Q  88 ccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||||| ||||||||||||||||||||||    
T  25721396 ccacttagtgggataaggcttggttattgttgt 25721364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 38328418 - 38328370
Alignment:
Q  72 atccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||| | || |||||||||||| |||||||||||||| |||||||    
T  38328418 atccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 38328370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 119
Target Start/End: Complemental strand, 39709298 - 39709202
Alignment:
Q  28 tgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgagataaggcttggttattgttg 119  Q
    ||||||||||| || |||||| |||||| ||||| ||| |||||||     |||||| | || |||||||||||| |||| ||||||||| ||||||    
T  39709298 tgagttggatcaaaatatggtttatgattgaacactatggcgtaatttgatccatgtagccgaccccacttagtgggatatggcttggttgttgttg 39709202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 41763091 - 41763043
Alignment:
Q  72 atccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||| | || |||||||||||| |||||||||||||| |||||||    
T  41763091 atccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 41763043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 8e-27; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 45289215 - 45289090
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttag 95  Q
    ||||||||  ||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||| ||     |||||||||| |  ||||||||||    
T  45289215 aactattaggaaagatttagagattaatgagttggatccaaatatggtttatgatagaacattatagcataatttgatccatgtcgccaaccccacttag 45289116  T
Q  96 tgagataaggcttggttattgttgta 121  Q
    || |||||||||||||| ||||||||    
T  45289115 tgggataaggcttggttgttgttgta 45289090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 49042094 - 49042219
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtat-atgatagaacattatagcgtaat-----ccatgtcgtcggccccactta 94  Q
    ||||||||  ||||||||||||  ||||||||||||||||| |||||| | ||||||||||| ||| |||||||     |||||| | || ||||||||     
T  49042094 aactattaggaaagatttagaggttaatgagttggatccaaatatggttttatgatagaacactatggcgtaatttgatccatgtagccgaccccacttg 49042193  T
Q  95 gtgagataaggcttggttattgttgt 120  Q
    |||||||||||||||||| |||||||    
T  49042194 gtgagataaggcttggttgttgttgt 49042219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 54128547 - 54128661
Alignment:
Q  11 aaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttagtgagataagg 105  Q
    ||||||||||||   ||||||||||| |||| |||||| |||||||||||||||| || ||     |||||||| | || |||||||||||| |||||||    
T  54128547 aaagatttagaggtcaatgagttggacccaaatatggtttatgatagaacattatggcataatttgatccatgtaggcgaccccacttagtgggataagg 54128646  T
Q  106 cttggttattgttgt 120  Q
    ||||||| |||||||    
T  54128647 cttggttgttgttgt 54128661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 36304124 - 36304196
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat 73  Q
    ||||||||| |||||| |||||| |||||||||||||| || |||||| |||||||| ||||||| |||||||    
T  36304124 aactattaagaaagatctagagattaatgagttggatcaaaatatggtttatgataggacattatggcgtaat 36304196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 48508397 - 48508517
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttagtgag 99  Q
    |||| ||| |||||||||   |||||||||||| ||| |||||| |||||||||||| ||| |||||     |||||||| | || |||||||||||| |    
T  48508397 attagaaaggatttagaggtcaatgagttggattcaaatatggtttatgatagaacactatggcgtaatttgatccatgtagccgaccccacttagtggg 48508496  T
Q  100 ataaggcttggttattgttgt 120  Q
    ||||||||||||| |||||||    
T  48508497 ataaggcttggttgttgttgt 48508517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 49841774 - 49841838
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    ||||||||| |||||| || ||| |||||||||||||| || |||||||||||||||||||||||    
T  49841774 aactattaacaaagatctaaagattaatgagttggatcgaaatatggtatatgatagaacattat 49841838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 53519742 - 53519862
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgag 99  Q
    ||||||||||||||||||   |||||||||||||||| || ||| | |||||||||| |||  ||| ||     |||||| | || ||||||||||||||    
T  53519742 attaaaaaagatttagaggtcaatgagttggatccaaataaggtttttgatagaacactatgacgtcatttgatccatgtagccgaccccacttagtgag 53519841  T
Q  100 ataaggcttggttattgttgt 120  Q
    ||||||||||||| |||||||    
T  53519842 ataaggcttggttgttgttgt 53519862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 15296065 - 15296192
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttag 95  Q
    ||||||||  ||||||||||||  |||||| |||||||||| |||| | |  ||||||||||||| | |||     |||||||| | || ||||||||||    
T  15296065 aactattaggaaagatttagaggttaatgaattggatccaaatatgatttcggatagaacattatggtgtaatttgatccatgtggccgaccccacttag 15296164  T
Q  96 tgagataaggcttggttattgttgtagt 123  Q
    || |||||||||||||| ||||||||||    
T  15296165 tgggataaggcttggttgttgttgtagt 15296192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 29601052 - 29601114
Alignment:
Q  3 ctattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    ||||||| ||||||||||||| ||||||||||||| ||| ||| || ||||||||||||||||    
T  29601052 ctattaagaaagatttagagattaatgagttggattcaaatatagtttatgatagaacattat 29601114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 121
Target Start/End: Complemental strand, 40106720 - 40106619
Alignment:
Q  25 taatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttagtgagataaggcttggttattgttg 119  Q
    ||||||||||||||||| |||||| ||||||||||||||||  | ||     ||| |||| || | |||||||||||| |||||||||||||| ||||||    
T  40106720 taatgagttggatccaaatatggtttatgatagaacattatgacataatttgatcaatgtagtggaccccacttagtgggataaggcttggttgttgttg 40106621  T
Q  120 ta 121  Q
    ||    
T  40106620 ta 40106619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 120
Target Start/End: Complemental strand, 12096825 - 12096705
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgag 99  Q
    |||| ||| |||||||||   |||||||||||||||| | |||| |||||||||||| ||| |||| ||     |||||| | || |||||||||||| |    
T  12096825 attagaaaggatttagaggtcaatgagttggatccaaatttggtgtatgatagaacactatggcgtcatttgatccatgtagccgaccccacttagtggg 12096726  T
Q  100 ataaggcttggttattgttgt 120  Q
    ||||||||||||| |||||||    
T  12096725 ataaggcttggttgttgttgt 12096705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 39600805 - 39600741
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    ||||||||| ||||||||||||  ||||||||||||||||| | |||| || |||||||||||||    
T  39600805 aactattaagaaagatttagaggttaatgagttggatccaaatctggtttacgatagaacattat 39600741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 40116450 - 40116390
Alignment:
Q  13 agatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat 73  Q
    ||||||||||| |||||||||||| | || |||||| |||||||||||||||| |||||||    
T  40116450 agatttagagattaatgagttggaccgaaatatggtttatgatagaacattatggcgtaat 40116390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 120
Target Start/End: Complemental strand, 52156204 - 52156084
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcg-----taatccatgtcgtcggccccacttagtgag 99  Q
    |||| ||| |||||||||   |||||||||||||||| |||||| |||||||||||| ||| |||     | |||||||| | || |||||||||||| |    
T  52156204 attagaaaggatttagaggtcaatgagttggatccaaatatggtttatgatagaacactatggcgtcatctgatccatgtagccgaccccacttagtggg 52156105  T
Q  100 ataaggcttggttattgttgt 120  Q
    |||||||| |||| |||||||    
T  52156104 ataaggctcggttgttgttgt 52156084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 5169015 - 5169114
Alignment:
Q  26 aatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||||||||||| |||||| | |||||||||| ||| |||| ||     |||||| | || |||||||||||| |||||||||||||| |||||||    
T  5169015 aatgagttggatccaaatatggtttttgatagaacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 5169114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 120
Target Start/End: Complemental strand, 45374570 - 45374477
Alignment:
Q  32 ttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    ||||||||||||||||| |  ||||||||||||| |||||||     |||||| |  | |||||||||||| |||||||||||||| |||||||    
T  45374570 ttggatccaactatggtttcggatagaacattatggcgtaatttaatccatgtagctgaccccacttagtgggataaggcttggttgttgttgt 45374477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 19162711 - 19162652
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaaca 61  Q
    ||||||||  ||||||||||||| ||||||||||||| ||| ||||||| |||||||||||    
T  19162711 aactattaggaaagatttagagattaatgagttggatgcaagtatggta-atgatagaaca 19162652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 19676205 - 19676089
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcg-----taatccatgtcgtcggccccacttag 95  Q
    ||||||||  ||| ||||||||  ||||||||||||||||| |||| | ||||||||| |||||| |||     | |||||||| |  | ||||||||||    
T  19676205 aactattaggaaaaatttagaggttaatgagttggatccaaatatgctgtatgatagagcattatggcgtgatttgatccatgtagctgaccccacttag 19676106  T
Q  96 tgagataaggcttggtt 112  Q
    || ||||||||||||||    
T  19676105 tgggataaggcttggtt 19676089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 19758045 - 19758109
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    ||||||||  ||| ||||||||| ||||||||||||||  | |||||| ||||||||||||||||    
T  19758045 aactattaggaaatatttagagattaatgagttggatctcaatatggtttatgatagaacattat 19758109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 38431021 - 38431069
Alignment:
Q  16 tttagagaataatgagttggatccaactatggtatatgatagaacatta 64  Q
    |||||||  ||||||||||||||||| |||||| |||||||||||||||    
T  38431021 tttagaggttaatgagttggatccaaatatggtttatgatagaacatta 38431069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 40116580 - 40116520
Alignment:
Q  13 agatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat 73  Q
    ||||||||||| |||||||||||| | || |||||| |||||||||||||| | |||||||    
T  40116580 agatttagagattaatgagttggaccgaaatatggtttatgatagaacattgtggcgtaat 40116520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 44571599 - 44571643
Alignment:
Q  15 atttagagaataatgagttggatccaactatggtatatgatagaa 59  Q
    ||||||||| ||||||||||||||||| |||||| ||||||||||    
T  44571599 atttagagattaatgagttggatccaaatatggtttatgatagaa 44571643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 50960761 - 50960697
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    ||||||||  |||| |||||||| ||||||||||||||||| |||||| ||| ||||| ||||||    
T  50960761 aactattaggaaaggtttagagattaatgagttggatccaaatatggtgtatcatagaccattat 50960697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 52138962 - 52139082
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgag 99  Q
    |||| ||| |||||||||   |||||||||||||||| | |||| |||||||||||| |||  ||| ||     |||||| | || |||||||||||| |    
T  52138962 attagaaaggatttagaggtcaatgagttggatccaaatttggtgtatgatagaacactatgacgttatttgatccatgtagccgaccccacttagtggg 52139061  T
Q  100 ataaggcttggttattgttgt 120  Q
    ||||||||||||| |||||||    
T  52139062 ataaggcttggttgttgttgt 52139082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 2133711 - 2133612
Alignment:
Q  26 aatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    ||||||||| |||||| ||| || |||||||||||| ||| |||| ||     ||||||  ||| |||||||||||| |||||||||||||| |||||||    
T  2133711 aatgagttgaatccaaatatagtttatgatagaacactatggcgtgatttgatccatgtactcgaccccacttagtgggataaggcttggttgttgttgt 2133612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 122
Target Start/End: Original strand, 11284157 - 11284272
Alignment:
Q  12 aagatttagagaataatgagttggatccaactatggtatatgatagaacattatagc-----gtaatccatgtcgtcggccccacttagtgagataaggc 106  Q
    ||||| |||||| |||||||||||||  || ||||||||||||| ||||||||| ||      | |||||||| | |  |||| ||||||||||||||||    
T  11284157 aagatgtagagattaatgagttggatataaatatggtatatgattgaacattattgcatcgtttgatccatgtagccaaccccgcttagtgagataaggc 11284256  T
Q  107 ttggttattgttgtag 122  Q
    ||| || |||||||||    
T  11284257 ttgcttgttgttgtag 11284272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 38060897 - 38060996
Alignment:
Q  26 aatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||||||||||| |||||| ||||||||||||  || |||||     |||||||| | || |||||||||||| ||||||  |||||| |||||||    
T  38060897 aatgagttggatccaaatatggtttatgatagaacaccatggcgtaatttgatccatgtagccgaccccacttagtgggataagaattggttgttgttgt 38060996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 50237758 - 50237695
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacatta 64  Q
    ||||||||| ||||||| ||||| || ||||||||||  || ||| ||||||||||||||||||    
T  50237758 aactattaagaaagattcagagattattgagttggatagaaatattgtatatgatagaacatta 50237695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 55244453 - 55244500
Alignment:
Q  18 tagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    |||||| |||||||||||||  || |||||||||||||||||||||||    
T  55244453 tagagattaatgagttggatagaaatatggtatatgatagaacattat 55244500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 37779045 - 37779099
Alignment:
Q  11 aaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    ||||||||||||| ||||||| | ||||| | |||||| ||||||||||||||||    
T  37779045 aaagatttagagattaatgagctagatccgaatatggtttatgatagaacattat 37779099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 120
Target Start/End: Complemental strand, 45486931 - 45486849
Alignment:
Q  43 tatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||| |||||||||||||||| || ||     |||||||| | ||||||||||||||| ||||| |||||||| |||||||    
T  45486931 tatggtttatgatagaacattatggcataatttgatccatgtagccggccccacttagtgggataaagcttggttgttgttgt 45486849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 120
Target Start/End: Complemental strand, 23610969 - 23610932
Alignment:
Q  83 cggccccacttagtgagataaggcttggttattgttgt 120  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  23610969 cggccccacttagtgggataaggcttggttgttgttgt 23610932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 31566209 - 31566160
Alignment:
Q  72 atccatgtcgtcggccccacttagtgagataaggcttggttattgttgta 121  Q
    |||||||| | || |||||||||||| |||||||||||||| ||||||||    
T  31566209 atccatgtagccgaccccacttagtgggataaggcttggttgttgttgta 31566160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 35033308 - 35033373
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgt 70  Q
    |||| |||||||||||||   |||||||||||||||| |||||| | |||||||||| ||| ||||    
T  35033308 attagaaaagatttagaggtcaatgagttggatccaaatatggtttttgatagaacactatggcgt 35033373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 39208789 - 39208830
Alignment:
Q  24 ataatgagttggatccaactatggtatatgatagaacattat 65  Q
    ||||||||| |||||||| |||||| ||||||||||||||||    
T  39208789 ataatgagtaggatccaaatatggtttatgatagaacattat 39208830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 19737142 - 19737206
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    ||||||||  ||| ||||||||| ||||||||||||||  | |||||| ||||||| ||||||||    
T  19737142 aactattaggaaatatttagagattaatgagttggatctcaatatggtttatgataaaacattat 19737206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 26490473 - 26490513
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaa 41  Q
    |||||||| |||||||||||||| ||||||||| |||||||    
T  26490473 aactattagaaaagatttagagactaatgagtttgatccaa 26490513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 27192471 - 27192507
Alignment:
Q  86 ccccacttagtgagataaggcttggttattgttgtag 122  Q
    |||||||||||| |||||||||||||| |||||||||    
T  27192471 ccccacttagtgggataaggcttggttgttgttgtag 27192507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 29475844 - 29475916
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat 73  Q
    ||||||||| |||||| |||||| |||||||||||||  || ||| || |||||||||| | ||| |||||||    
T  29475844 aactattaagaaagatctagagattaatgagttggattgaaatattgtttatgatagaaaactatggcgtaat 29475916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 39235296 - 39235360
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    ||||||||  |||||||||||   |||||||||||||| || |||||| || |||||||||||||    
T  39235296 aactattaggaaagatttagaagttaatgagttggatctaaatatggtttacgatagaacattat 39235360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 39512777 - 39512825
Alignment:
Q  72 atccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||| | || |||||||||||| |||||||||||||| |||||||    
T  39512777 atccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 39512825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 46431803 - 46431767
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggat 37  Q
    |||||||||||||||| |||||| |||||||||||||    
T  46431803 aactattaaaaaagatctagagattaatgagttggat 46431767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 50249611 - 50249659
Alignment:
Q  72 atccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||| |||| |||||||||||| |||| ||||||||| |||||||    
T  50249611 atccatgtagtcgaccccacttagtgggatacggcttggttgttgttgt 50249659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 49)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 40980052 - 40979927
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttag 95  Q
    |||||||| |||||||||||||   |||||||||||||||| |||||| |||||||||||| ||| |||||     |||||||| | || ||||||||||    
T  40980052 aactattagaaaagatttagaggtcaatgagttggatccaaatatggtttatgatagaacactatggcgtaatttgatccatgtagccgaccccacttag 40979953  T
Q  96 tgagataaggcttggttattgttgta 121  Q
    || |||||||||||||| ||||||||    
T  40979952 tgggataaggcttggttgttgttgta 40979927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 36101891 - 36101777
Alignment:
Q  11 aaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttagtgagataagg 105  Q
    ||||||||| ||| |||||||||||||| || |||||| ||||||||||||||||  ||||     |||||||| || | |||||||||||| |||||||    
T  36101891 aaagatttatagattaatgagttggatcaaaatatggtttatgatagaacattatgacgtaatttgatccatgtagttgaccccacttagtgggataagg 36101792  T
Q  106 cttggttattgttgt 120  Q
    ||||||| |||||||    
T  36101791 cttggttgttgttgt 36101777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 37976403 - 37976457
Alignment:
Q  11 aaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    ||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||    
T  37976403 aaagatttagagattaatgagttggatccaaatatggtttatgatagaacattat 37976457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 28542068 - 28542007
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacat 62  Q
    ||||||||| ||||||||||||| |||||||||||||  ||||||||| |||||||||||||    
T  28542068 aactattaagaaagatttagagattaatgagttggattgaactatggtttatgatagaacat 28542007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 28628057 - 28627936
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttag 95  Q
    ||||||||  ||||||||||||| ||||||||||||| ||| | |||| |||||||||||||||| |||||     |||||||| | || | ||||||||    
T  28628057 aactattaggaaagatttagagattaatgagttggatgcaaatgtggtttatgatagaacattatggcgtaatttgatccatgtagccgactccacttag 28627958  T
Q  96 tgagataaggcttggttattgt 117  Q
    || |||||||||| ||| ||||    
T  28627957 tgggataaggcttagttgttgt 28627936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 1569174 - 1569246
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat 73  Q
    ||||||||| |||||| |||||| |||||||||||||| || |||||| |||||||||||||||  |||||||    
T  1569174 aactattaagaaagatctagagattaatgagttggatcaaaatatggtttatgatagaacattacggcgtaat 1569246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 27648942 - 27649062
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttagtgag 99  Q
    |||| |||||||||||||   |||||||||||||||| | |||| |||||||||||| | | |||||     |||||||| | || |||||||||||| |    
T  27648942 attagaaaagatttagaggtcaatgagttggatccaaatttggtttatgatagaacactgtggcgtaatttgatccatgtagccgaccccacttagtggg 27649041  T
Q  100 ataaggcttggttattgttgt 120  Q
    ||||||||||||| |||||||    
T  27649042 ataaggcttggttgttgttgt 27649062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 38135337 - 38135265
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat 73  Q
    ||||||||||||||||||||||| |||||||||||| | || |||||  |||||||||| ||||| |||||||    
T  38135337 aactattaaaaaagatttagagattaatgagttggaccgaaatatgggttatgatagaatattatggcgtaat 38135265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 120
Target Start/End: Complemental strand, 9210814 - 9210704
Alignment:
Q  15 atttagagaataatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttagtgagataaggcttg 109  Q
    ||||||||  ||||||||||||||||| |||||| ||||||| |||||||| |||||     |||||||| |  | |||||||||||| ||||||||||     
T  9210814 atttagaggttaatgagttggatccaaatatggtttatgatacaacattatggcgtaatttgatccatgtagctgaccccacttagtgggataaggcttc 9210715  T
Q  110 gttattgttgt 120  Q
    ||| |||||||    
T  9210714 gttgttgttgt 9210704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 5577596 - 5577547
Alignment:
Q  16 tttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    |||||||| ||||||||||||||||| |||||| ||||||||||||||||    
T  5577596 tttagagactaatgagttggatccaagtatggtttatgatagaacattat 5577547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 11594122 - 11594242
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgag 99  Q
    |||| ||| |||||||||   |||||||||||||||| | |||| |||||||||||| ||| |||| ||     |||||| | || |||||||||||| |    
T  11594122 attagaaaggatttagaggtcaatgagttggatccaaatttggtgtatgatagaacactatggcgtcatttgatccatgtagccgaccccacttagtggg 11594221  T
Q  100 ataaggcttggttattgttgt 120  Q
    ||||||||||||| |||||||    
T  11594222 ataaggcttggttgttgttgt 11594242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 21517504 - 21517440
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    ||||||||||||| ||||||||| |||| |||||||||||| |||| | ||||||| ||||||||    
T  21517504 aactattaaaaaatatttagagattaataagttggatccaaatatgatttatgatataacattat 21517440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 27893687 - 27893563
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttag 95  Q
    ||||||||| ||||||||||||| ||||||| |||| | || |||| | |||||||||||||||| || ||     || ||||| | || ||| ||||||    
T  27893687 aactattaagaaagatttagagattaatgagctggaccgaaatatgttttatgatagaacattatggcataatttgattcatgtagccgaccctacttag 27893588  T
Q  96 tgagataaggcttggttattgttgt 120  Q
    || |||||||||||||| |||||||    
T  27893587 tgcgataaggcttggttgttgttgt 27893563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 6 - 121
Target Start/End: Original strand, 33731997 - 33732115
Alignment:
Q  6 ttaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcg---taatccatgtcgtcggccccacttagtgagata 102  Q
    |||| |||||| || ||| ||||||||  |||| || |||||| |||||||||||||||| ||    | |||||||| | ||| ||||||||||| ||||    
T  33731997 ttaagaaagatctaaagattaatgagtgagatcgaaatatggtttatgatagaacattatggcaatttgatccatgtagccggtcccacttagtgggata 33732096  T
Q  103 aggcttggttattgttgta 121  Q
    |||||||||| ||||||||    
T  33732097 aggcttggttgttgttgta 33732115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 36239920 - 36239848
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat 73  Q
    ||||||||  ||| ||||||||| ||| ||||||||||||| |||| | |||||||||||||||| |||||||    
T  36239920 aactattaggaaaaatttagagattaacgagttggatccaaatatgctttatgatagaacattatggcgtaat 36239848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 43281836 - 43281956
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcg-----taatccatgtcgtcggccccacttagtgag 99  Q
    |||| |||||||||||||   |||||||||||||||| |||||| | |||||||||| ||| |||     | |||||||| | || |||||||||||| |    
T  43281836 attagaaaagatttagaggtcaatgagttggatccaaatatggtttttgatagaacactatggcgtcatttgatccatgtagccgaccccacttagtggg 43281935  T
Q  100 ataaggcttggttattgttgt 120  Q
    | ||||||||||| |||||||    
T  43281936 acaaggcttggttgttgttgt 43281956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 120
Target Start/End: Complemental strand, 45836602 - 45836482
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcg-----taatccatgtcgtcggccccacttagtgag 99  Q
    |||| ||| |||||||||   |||||||||||||||| |||||| |||||||||||| ||| |||     | |||||||| | || |||||||||||| |    
T  45836602 attagaaaggatttagaggtcaatgagttggatccaaatatggtttatgatagaacactatggcgtcatttgatccatgtagccgaccccacttagtggg 45836503  T
Q  100 ataaggcttggttattgttgt 120  Q
    |||||||| |||| |||||||    
T  45836502 ataaggctcggttgttgttgt 45836482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 2885821 - 2885722
Alignment:
Q  26 aatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    ||||||||||| |||| |||||| |||||||||||| ||| | |||     |||||||| | || |||||||||||| |||||||||||||| |||||||    
T  2885821 aatgagttggacccaaatatggtttatgatagaacactatggtgtaatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 2885722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 28208423 - 28208328
Alignment:
Q  30 agttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||||||| |||||| |||||||||||| ||| |||| ||     |||||| | || |||||||||||| |||||||||||||| |||||||    
T  28208423 agttggatccaaatatggtttatgatagaacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 28208328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 36136932 - 36136994
Alignment:
Q  11 aaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat 73  Q
    |||||||||||   |||||| |||||||||| |||||| |||||||||||||||||| |||||    
T  36136932 aaagatttagatgttaatgaattggatccaaatatggtttatgatagaacattatagggtaat 36136994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 116
Target Start/End: Original strand, 42969870 - 42969976
Alignment:
Q  15 atttagagaataatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttagtgagataaggcttg 109  Q
    ||||||||  ||||||||||||||||| |||||| |||||| ||||||||| |  ||     |||||||| | || |||||||||||| ||||||||||     
T  42969870 atttagaggttaatgagttggatccaaatatggtttatgattgaacattatcgtataatttgatccatgtagccgaccccacttagtgggataaggcttt 42969969  T
Q  110 gttattg 116  Q
    |||||||    
T  42969970 gttattg 42969976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 120
Target Start/End: Complemental strand, 12841395 - 12841275
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgag 99  Q
    |||| ||| |||||||||   ||||||||| |||||| | |||| |||||||||||| ||| |||| ||     |||||| | || |||||||||||| |    
T  12841395 attagaaaggatttagaggtcaatgagttgtatccaaatttggtttatgatagaacactatggcgtcatttgatccatgtagccgaccccacttagtggg 12841296  T
Q  100 ataaggcttggttattgttgt 120  Q
    ||||||||||||| |||||||    
T  12841295 ataaggcttggttgttgttgt 12841275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 22349782 - 22349902
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgag 99  Q
    |||||||| |||||| ||   ||| |||||||||||| | ||||||||||||||| | ||| |||| ||     |||||| |||| |||||||||||| |    
T  22349782 attaaaaaggatttaaaggtcaataagttggatccaaatttggtatatgatagaatactatggcgtcatttgatccatgtagtcgaccccacttagtggg 22349881  T
Q  100 ataaggcttggttattgttgt 120  Q
    |||||||||| || |||||||    
T  22349882 ataaggcttgattgttgttgt 22349902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 29650546 - 29650666
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgag 99  Q
    |||| |||||||||||||   |||||||| ||||||| |||||| | |||||||||| ||  |||| ||     |||||| | || |||||||||||| |    
T  29650546 attagaaaagatttagaggtcaatgagtttgatccaaatatggtttttgatagaacactaaggcgtcatttgatccatgtagccgaccccacttagtggg 29650645  T
Q  100 ataaggcttggttattgttgt 120  Q
    ||||||||||||| |||||||    
T  29650646 ataaggcttggttgttgttgt 29650666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 35922411 - 35922475
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    ||||||||| ||||||||||||  |||||||||| ||| || |||| | ||||||||||||||||    
T  35922411 aactattaagaaagatttagaggttaatgagttgaatctaaatatgatttatgatagaacattat 35922475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 120
Target Start/End: Complemental strand, 39906492 - 39906372
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgag 99  Q
    |||| ||| |||||||||   ||||| |||||||||| | |||| |||||||||||| ||| |||| ||     |||||| | || |||||||||||| |    
T  39906492 attagaaaggatttagaggtcaatgacttggatccaaatttggtgtatgatagaacactatggcgtcatttgatccatgtagccgaccccacttagtggg 39906393  T
Q  100 ataaggcttggttattgttgt 120  Q
    ||||||||||||| |||||||    
T  39906392 ataaggcttggttgttgttgt 39906372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 21078085 - 21078144
Alignment:
Q  11 aaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgt 70  Q
    ||||||||||||   |||||||||||||||| | |||| |||||||||||||||| ||||    
T  21078085 aaagatttagaggtcaatgagttggatccaaatttggtgtatgatagaacattatggcgt 21078144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 24549812 - 24549754
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaa 59  Q
    ||||||||| |||||| |||||| |||||||||||||  || |||||||| ||||||||    
T  24549812 aactattaagaaagatctagagattaatgagttggattgaaatatggtatttgatagaa 24549754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 46355904 - 46355858
Alignment:
Q  72 atccatgtcgtcggccccacttagtgagataaggcttggttattgtt 118  Q
    |||||||| | || ||||||||||||||||||||||||||| |||||    
T  46355904 atccatgtagccgaccccacttagtgagataaggcttggttgttgtt 46355858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 47848841 - 47848895
Alignment:
Q  11 aaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    |||||||| | || ||||||| ||||||||| |||||| ||||||||||||||||    
T  47848841 aaagatttggggattaatgagctggatccaaatatggtttatgatagaacattat 47848895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 110
Target Start/End: Original strand, 47852269 - 47852359
Alignment:
Q  25 taatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttagtgagataaggcttgg 110  Q
    ||||||||||||||||| | |||| ||| |||||||||||| |||||     |||||||| | || |||||||||| | ||||||||||||    
T  47852269 taatgagttggatccaaatgtggtgtatcatagaacattatggcgtaatttgatccatgtagccgaccccacttagggggataaggcttgg 47852359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 120
Target Start/End: Original strand, 20899416 - 20899453
Alignment:
Q  83 cggccccacttagtgagataaggcttggttattgttgt 120  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  20899416 cggccccacttagtgggataaggcttggttgttgttgt 20899453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 30914536 - 30914503
Alignment:
Q  86 ccccacttagtgagataaggcttggttattgttg 119  Q
    |||||||||||| |||||||||||||||||||||    
T  30914536 ccccacttagtgggataaggcttggttattgttg 30914503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 39812172 - 39812217
Alignment:
Q  72 atccatgtcgtcggccccacttagtgagataaggcttggttattgt 117  Q
    |||||||| || |||||||||||||| |||||||||||||| ||||    
T  39812172 atccatgtagttggccccacttagtgggataaggcttggttgttgt 39812217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 48919346 - 48919395
Alignment:
Q  72 atccatgtcgtcggccccacttagtgagataaggcttggttattgttgta 121  Q
    |||||||| |||| ||||||||| || |||||||||||||| ||||||||    
T  48919346 atccatgtagtcgaccccacttaatgggataaggcttggttgttgttgta 48919395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 2882836 - 2882788
Alignment:
Q  25 taatgagttggatccaactatggtatatgatagaacattatagcgtaat 73  Q
    |||||||||||||| ||  ||||| |||||||||||||||| |||||||    
T  2882836 taatgagttggatcgaaacatggtttatgatagaacattatggcgtaat 2882788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 5418225 - 5418288
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    ||||||||| ||||||| ||||  |||||||||||| | || |||||| ||||||||||||||||    
T  5418225 aactattaagaaagattaagagt-taatgagttggaccgaaatatggtttatgatagaacattat 5418288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 5418308 - 5418356
Alignment:
Q  72 atccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||| |||| ||||| |||||| |||||||||||||| |||||||    
T  5418308 atccatgtagtcgaccccatttagtgggataaggcttggttgttgttgt 5418356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 12966174 - 12966238
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    ||||||||| ||| ||||||||| |||||| ||||||  || |||||||||||||| | ||||||    
T  12966174 aactattaagaaatatttagagattaatgatttggatagaaatatggtatatgataaatcattat 12966238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 14057636 - 14057700
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    ||||||||  ||||||||||||  ||||| ||| ||| ||| |||||| ||||||||||||||||    
T  14057636 aactattaggaaagatttagaggttaatgcgttcgattcaaatatggtttatgatagaacattat 14057700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 14367664 - 14367728
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    ||||||||  ||||||||||||  ||||| ||| ||| ||| |||||| ||||||||||||||||    
T  14367664 aactattaggaaagatttagaggttaatgcgttcgattcaaatatggtttatgatagaacattat 14367728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 31005439 - 31005487
Alignment:
Q  72 atccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||| | || |||||||||||| |||||||||||||| |||||||    
T  31005439 atccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 31005487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 31682650 - 31682602
Alignment:
Q  72 atccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||| | || |||||||||||| |||||||||||||| |||||||    
T  31682650 atccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 31682602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 31869150 - 31869102
Alignment:
Q  72 atccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||| | || |||||||||||| |||||||||||||| |||||||    
T  31869150 atccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 31869102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 32368459 - 32368407
Alignment:
Q  3 ctattaaaaaagatttagagaataatgagttggatccaactatggtatatgat 55  Q
    |||||||  |||||||||||| || ||||||||||| || |||||||||||||    
T  32368459 ctattaaggaagatttagagattagtgagttggatcgaaatatggtatatgat 32368407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 33103094 - 33103198
Alignment:
Q  11 aaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttagtgagataagg 105  Q
    ||||| ||||||| |||||||||| |||  | |||||| ||||||||||||  ||||||||     |||||||| | || |||||||||||  |||||||    
T  33103094 aaagacttagagattaatgagttgaatcggaatatggtttatgatagaacaccatagcgtaatttgatccatgtagccgaccccacttagtaggataagg 33103193  T
Q  106 cttgg 110  Q
    |||||    
T  33103194 cttgg 33103198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 37618179 - 37618227
Alignment:
Q  72 atccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||| | || |||||||||||| |||||||||||||| |||||||    
T  37618179 atccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 37618227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 43491542 - 43491590
Alignment:
Q  72 atccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||| | || |||||||||||| |||||||||||||| |||||||    
T  43491542 atccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 43491590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 45601638 - 45601694
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaaca 61  Q
    ||||| |||||| |||||| |||||||||||||| || |||| | ||||||||||||    
T  45601638 attaagaaagatctagagattaatgagttggatcaaaatatgatttatgatagaaca 45601694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 490503 - 490617
Alignment:
Q  11 aaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttagtgagataagg 105  Q
    ||||||||||||| | ||||||||||||||| |||||| |||||||||||||||| |||||     |||||||| | || |||||||||||| |||||||    
T  490503 aaagatttagagattgatgagttggatccaaatatggtttatgatagaacattatggcgtaatttgatccatgtagccgaccccacttagtgggataagg 490602  T
Q  106 cttggttattgttgt 120  Q
    |||| || |||||||    
T  490603 cttgtttgttgttgt 490617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 29520820 - 29520934
Alignment:
Q  14 gatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttagtgagataaggctt 108  Q
    |||||||||| ||||||||||||||||| |||||| |||||||||||||||| |||||     |||||||| | |  ||||| |||||| ||||| ||||    
T  29520820 gatttagagattaatgagttggatccaaatatggtttatgatagaacattatggcgtaatttgatccatgtagcccaccccatttagtgggataatgctt 29520919  T
Q  109 ggttattgttgtagt 123  Q
    |||| ||||||||||    
T  29520920 ggttgttgttgtagt 29520934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 43904777 - 43904717
Alignment:
Q  13 agatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat 73  Q
    ||||||||||| |||||||||||||| || |||||| |||||||||||||||| |||||||    
T  43904777 agatttagagattaatgagttggatctaaatatggtttatgatagaacattatggcgtaat 43904717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 123
Target Start/End: Original strand, 45419416 - 45419520
Alignment:
Q  24 ataatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttagtgagataaggcttggttattgtt 118  Q
    |||||||||| ||||||| | |||| |||||||||||||||| | |||     |||||||| | || |||||||||||| |||||||||||||| |||||    
T  45419416 ataatgagtttgatccaaatttggtttatgatagaacattatggtgtaatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgtt 45419515  T
Q  119 gtagt 123  Q
    |||||    
T  45419516 gtagt 45419520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 30559861 - 30559915
Alignment:
Q  11 aaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    ||||||||||||| ||||||||||||||||  |||||| ||||||||||||||||    
T  30559861 aaagatttagagattaatgagttggatccatatatggtttatgatagaacattat 30559915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 120
Target Start/End: Original strand, 2216456 - 2216568
Alignment:
Q  12 aagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgagataaggc 106  Q
    ||||||||||||  |||||||||||||| | |||| | |||||||||||||||||| |||||     |||||| | || ||||||| |||||||||||||    
T  2216456 aagatttagagatcaatgagttggatcctaatatgtt-tatgatagaacattatagtgtaatttgatccatgtagccgaccccactcagtgagataaggc 2216554  T
Q  107 ttggttattgttgt 120  Q
    |||||  |||||||    
T  2216555 ttggtggttgttgt 2216568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 16917352 - 16917462
Alignment:
Q  12 aagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcg----taatccatgtcgtcggccccacttagtgagataaggct 107  Q
    |||||||||||| |||||||||||||  || |||||||||||||||||||||  |  |    | |||||||| | || |||||||||||| |||||| ||    
T  16917352 aagatttagagattaatgagttggatagaaatatggtatatgatagaacatttgactgcttttgatccatgtagccgtccccacttagtgggataagact 16917451  T
Q  108 tggttattgtt 118  Q
    |||||||||||    
T  16917452 tggttattgtt 16917462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 120
Target Start/End: Original strand, 31715992 - 31716104
Alignment:
Q  15 atttagagaataatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgt--cgtcggccccacttagtgagataaggct 107  Q
    ||||||||| |||| |||||||||||| |||||| || ||||||||||||| |||||     ||||||||  ||||  | |||||||||| |||||||||    
T  31715992 atttagagattaattagttggatccaaatatggtttaagatagaacattatggcgtaatttgatccatgtagcgtcaccaccacttagtgggataaggct 31716091  T
Q  108 tggttattgttgt 120  Q
    ||||| |||||||    
T  31716092 tggttgttgttgt 31716104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 121
Target Start/End: Complemental strand, 35914701 - 35914600
Alignment:
Q  25 taatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttagtgagataaggcttggttattgttg 119  Q
    |||||||||||| | || |||||| |||||||||||||||| |||||     |||||||| |  | ||||||||||||||||||| ||||||| ||||||    
T  35914701 taatgagttggaccaaaatatggtttatgatagaacattatggcgtaatttgatccatgtagctgaccccacttagtgagataagacttggttgttgttg 35914602  T
Q  120 ta 121  Q
    ||    
T  35914601 ta 35914600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 120
Target Start/End: Complemental strand, 11523843 - 11523723
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgag 99  Q
    |||| ||| |||||||||   |||||||||||||||| | |||| |||||||||||| ||| |||| ||     |||||| | || |||||||||||| |    
T  11523843 attagaaaggatttagaggtcaatgagttggatccaaatttggtgtatgatagaacactatggcgtcatttgatccatgtagccgaccccacttagtggg 11523744  T
Q  100 ataaggcttggttattgttgt 120  Q
    ||||||||||||| |||||||    
T  11523743 ataaggcttggttgttgttgt 11523723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 120
Target Start/End: Complemental strand, 25473523 - 25473403
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgag 99  Q
    |||| ||| |||||||||   |||||||| ||||||| | |||| |||||||||||| |||||||| ||     |||||| | || |||||||||||| |    
T  25473523 attagaaaggatttagaggtcaatgagtttgatccaaatttggtgtatgatagaacactatagcgtcatttgatccatgtagccgaccccacttagtggg 25473424  T
Q  100 ataaggcttggttattgttgt 120  Q
    ||||||||||||| |||||||    
T  25473423 ataaggcttggttgttgttgt 25473403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 45041439 - 45041324
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttag 95  Q
    ||||||||  ||||||||||||  ||||||||||||||||| |||||| ||||||||  |||||| |||||     |||||||| |  | ||||||||||    
T  45041439 aactattaggaaagatttagaggttaatgagttggatccaa-tatggtttatgatagcgcattatggcgtaatttgatccatgtagctgaccccacttag 45041341  T
Q  96 tgagataaggcttggtt 112  Q
    || ||||||||||||||    
T  45041340 tgggataaggcttggtt 45041324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 17491778 - 17491708
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgta 71  Q
    ||||||||| ||||| || |||| |||||||||||| | || |||||| |||||||||||||||| |||||    
T  17491778 aactattaagaaagacttggagattaatgagttggaccaaaatatggtttatgatagaacattatggcgta 17491708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 23492202 - 23492316
Alignment:
Q  11 aaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgt-----aatccatgtcgtcggccccacttagtgagataagg 105  Q
    |||||| ||| || |||||||||||||  || |||| |||||||||||||| ||| | ||     ||||||||| | || ||||||||||||||||||||    
T  23492202 aaagatgtagcgattaatgagttggatagaaatatgatatatgatagaacactatggtgtcatttaatccatgtagccgaccccacttagtgagataagg 23492301  T
Q  106 cttggttattgttgt 120  Q
    |||| || |||||||    
T  23492302 cttgtttgttgttgt 23492316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 44529395 - 44529509
Alignment:
Q  13 agatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgagataaggct 107  Q
    ||||||||||   |||||||||||||||| | |||| |||||||||||| ||| || | ||     |||||| | || |||||||||||| |||||||||    
T  44529395 agatttagaggtcaatgagttggatccaaatttggtttatgatagaacactatggcatcatttgatccatgtagccgaccccacttagtgggataaggct 44529494  T
Q  108 tggttattgttgtag 122  Q
    ||||| |||||||||    
T  44529495 tggttgttgttgtag 44529509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 35643727 - 35643670
Alignment:
Q  4 tattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaaca 61  Q
    |||||| |||||| |||||| |||||||||||||| || |||||| ||||||||||||    
T  35643727 tattaagaaagatctagagattaatgagttggatcgaaatatggtttatgatagaaca 35643670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 5908804 - 5908928
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttag 95  Q
    ||||||||||||||||  |  || |||||||||||||| || |||| | ||||||||||| |||| |||||     |||||||| || || |||| ||||    
T  5908804 aactattaaaaaagatccaaggattaatgagttggatcaaaatatgatttatgatagaaccttattgcgtaattggatccatgtagttggacccaattag 5908903  T
Q  96 tgagataaggcttggttattgttgt 120  Q
    ||  ||||||||||||| |||||||    
T  5908904 tggaataaggcttggttgttgttgt 5908928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 33827881 - 33827821
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaaca 61  Q
    ||||||||||||| ||||| ||| |||||| ||||||| || |||||| ||||||||||||    
T  33827881 aactattaaaaaatatttatagattaatgaattggatctaaatatggtttatgatagaaca 33827821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 36069760 - 36069832
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat 73  Q
    ||||||||| ||| ||||||||| ||||||||||| |  || |||||| |||||||||||||||  |||||||    
T  36069760 aactattaacaaatatttagagattaatgagttgggtagaaatatggtttatgatagaacattacggcgtaat 36069832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 36545311 - 36545431
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgag 99  Q
    |||| ||| |||||||||   |||||||||||||||| | |||| |||||||||||| |||  ||| ||     |||||| | || |||||||||||| |    
T  36545311 attagaaaggatttagaggtcaatgagttggatccaaatttggtgtatgatagaacactatgacgtcatttgatccatgtagccgaccccacttagtggg 36545410  T
Q  100 ataaggcttggttattgttgt 120  Q
    ||||||||||||| |||||||    
T  36545411 ataaggcttggttgttgttgt 36545431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 38392013 - 38391945
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat 73  Q
    ||||| |||||| || ||| |||||||| ||||| || ||||||||||||||||| ||||| |||||||    
T  38392013 attaagaaagatctacagattaatgagtgggatcgaaatatggtatatgatagaatattatggcgtaat 38391945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 120
Target Start/End: Complemental strand, 42469847 - 42469727
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcg-----taatccatgtcgtcggccccacttagtgag 99  Q
    |||| |||||||||||||   |||||||||||||||| |||||| | |||||||||| ||| |||     | |||||||| |  | ||||||||| || |    
T  42469847 attagaaaagatttagaggtcaatgagttggatccaaatatggtttttgatagaacactatggcgtcatttgatccatgtagctgaccccacttattggg 42469748  T
Q  100 ataaggcttggttattgttgt 120  Q
    ||||||||||||| |||||||    
T  42469747 ataaggcttggttgttgttgt 42469727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 12966434 - 12966381
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgataga 58  Q
    ||||| ||||||||||||| |||||||||| || ||| |||||| |||||||||    
T  12966434 attaagaaagatttagagattaatgagttgaattcaaatatggtttatgataga 12966381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 16705905 - 16705978
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatat-gatagaacattatagcgtaat 73  Q
    ||||||||| ||| |  |||||| |||||||||||||| || |||||||||| ||| ||||||||| |||||||    
T  16705905 aactattaagaaaaagctagagattaatgagttggatcgaaatatggtatatggatggaacattatggcgtaat 16705978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 120
Target Start/End: Complemental strand, 1928659 - 1928587
Alignment:
Q  53 gatagaacattatagcgta-----atccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    ||||||||||||| |||||     |||||||| | || |||||||||||| |||||||||||||| |||||||    
T  1928659 gatagaacattatggcgtaatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 1928587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 9905006 - 9904942
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    ||||||||| ||||||||||| | |||||| ||||||| || || ||| ||||||| ||||||||    
T  9905006 aactattaataaagatttagaaattaatgatttggatcaaaataaggtttatgataaaacattat 9904942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 14742130 - 14742082
Alignment:
Q  72 atccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||| | || |||||||||||| |||||||||||||| |||||||    
T  14742130 atccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 14742082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 28169550 - 28169614
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    ||||||||  |||||||| |||| ||||||||||||| ||| |||||| ||||||| || |||||    
T  28169550 aactattaggaaagattttgagattaatgagttggattcaaatatggtttatgataaaatattat 28169614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 35362774 - 35362702
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat 73  Q
    ||||||||  |||||||| || | ||||||||||||   || |||||| |||||||||||||||| |||||||    
T  35362774 aactattaggaaagatttggaaattaatgagttggactgaaatatggtgtatgatagaacattatggcgtaat 35362702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 41971914 - 41971850
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    ||||| ||| ||||||||||||| ||||||||||||   || ||| || ||||||||||||||||    
T  41971914 aactactaagaaagatttagagattaatgagttggactgaaatattgtttatgatagaacattat 41971850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 42584541 - 42584581
Alignment:
Q  25 taatgagttggatccaactatggtatatgatagaacattat 65  Q
    |||||| |||||||||| |||||| ||||||||||||||||    
T  42584541 taatgatttggatccaaatatggtttatgatagaacattat 42584581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 51)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 120
Target Start/End: Original strand, 41560401 - 41560511
Alignment:
Q  15 atttagagaataatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttagtgagataaggcttg 109  Q
    ||||||||| ||||||||||||||||| |||||  |||||||||||||||| |||||     |||||||| | || |||||||||||| |||||||||||    
T  41560401 atttagagattaatgagttggatccaaatatgggttatgatagaacattatggcgtaatttgatccatgtagccgaccccacttagtgggataaggcttg 41560500  T
Q  110 gttattgttgt 120  Q
    ||| |||||||    
T  41560501 gttgttgttgt 41560511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 3 - 120
Target Start/End: Complemental strand, 11941702 - 11941580
Alignment:
Q  3 ctattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttagtg 97  Q
    |||||| |||||||||||||| || |||||||||||  | |||||| ||||||| |||||||| |||||     |||||||| ||||||| |||||||||    
T  11941702 ctattagaaaagatttagagattattgagttggatcggagtatggtttatgataaaacattatggcgtattttgatccatgtagtcggcctcacttagtg 11941603  T
Q  98 agataaggcttggttattgttgt 120  Q
     |||| ||||||||| |||||||    
T  11941602 ggatacggcttggttgttgttgt 11941580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 29128941 - 29129065
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat------ccatgtcgtcggccccactta 94  Q
    ||||||||  ||||||||||||  |||  |||||||||||| |||||| |||||||||||||||| | |||||      |||||| | || |||||||||    
T  29128941 aactattaggaaagatttagaggttaacaagttggatccaaatatggtttatgatagaacattatggtgtaatatgatcccatgtagccgaccccactta 29129040  T
Q  95 gtgagataaggcttggttattgttg 119  Q
    |||||||||||||||||| ||||||    
T  29129041 gtgagataaggcttggtttttgttg 29129065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 8796367 - 8796491
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcg-----taatccatgtcgtcggccccacttag 95  Q
    ||||||||| |||||| |||| | |||||| ||||||  || |||||| |||||||||||||||| |||     |||||||||| | || ||||||||||    
T  8796367 aactattaagaaagatctagatattaatgacttggattgaaatatggtttatgatagaacattatggcgtaatttaatccatgtagccgaccccacttag 8796466  T
Q  96 tgagataaggcttggttattgttgt 120  Q
    || |||||||||||||| |||||||    
T  8796467 tgggataaggcttggttgttgttgt 8796491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 14 - 120
Target Start/End: Complemental strand, 4707331 - 4707221
Alignment:
Q  14 gatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat----ccatgtcgtcggccccacttagtgagataaggcttg 109  Q
    |||||||||  ||||||||||||||||| | |||| |||||||||||| ||| |||||||     ||||| | || |||||||||||| |||||||||||    
T  4707331 gatttagaggttaatgagttggatccaaatttggtttatgatagaacactatggcgtaatttgatcatgtagccgaccccacttagtgggataaggcttg 4707232  T
Q  110 gttattgttgt 120  Q
    ||| |||||||    
T  4707231 gttgttgttgt 4707221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 36624008 - 36623897
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagc-gta---atccatgtcgtcggccccacttagt 96  Q
    |||||||| |||||||||||||  ||||||||||||||||| |||||| || ||| ||||||||| || |||   |||||||| |||| ||| |||||||    
T  36624008 aactattagaaaagatttagaggctaatgagttggatccaaatatggtttaggatcgaacattatggctgtaatgatccatgtagtcgaccctacttagt 36623909  T
Q  97 gagataaggctt 108  Q
    | ||||||||||    
T  36623908 gggataaggctt 36623897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 29 - 125
Target Start/End: Complemental strand, 38807767 - 38807666
Alignment:
Q  29 gagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgagataaggcttggttattgttgtagt 123  Q
    ||||||||||||| |||||| |||||||||||| ||| |||||||     |||||| | || |||||||||||| |||||||||||||| ||||||| ||    
T  38807767 gagttggatccaaatatggtttatgatagaacactatggcgtaatttgttccatgtagccgaccccacttagtgggataaggcttggttgttgttgttgt 38807668  T
Q  124 gt 125  Q
    ||    
T  38807667 gt 38807666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 120
Target Start/End: Complemental strand, 25979351 - 25979231
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcg-----taatccatgtcgtcggccccacttagtgag 99  Q
    |||| ||| |||||||||   |||||||||||||||| |||||| |||||||||||| ||| |||     | |||||||| | || |||||||||||| |    
T  25979351 attagaaaggatttagaggtcaatgagttggatccaaatatggtttatgatagaacactatggcgtcatttgatccatgtagccgaccccacttagtggg 25979252  T
Q  100 ataaggcttggttattgttgt 120  Q
    ||||||||||||| |||||||    
T  25979251 ataaggcttggttgttgttgt 25979231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 19908144 - 19908046
Alignment:
Q  16 tttagagaataatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttagtgagataaggcttg 109  Q
    |||||||| ||||||||||||| ||| |||||| |||||| ||||||||| |||||     |||||||| | || |||||||||||| |||||||||||    
T  19908144 tttagagattaatgagttggattcaaatatggtttatgattgaacattattgcgtaattttatccatgtagccgaccccacttagtgggataaggcttg 19908046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 121
Target Start/End: Complemental strand, 49347513 - 49347392
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgag 99  Q
    |||| ||| |||||||||   |||||||||||||||| | |||| |||||||||||| ||| |||| ||     |||||| | || |||||||||||| |    
T  49347513 attagaaaggatttagaggtcaatgagttggatccaaatttggtgtatgatagaacactatggcgtcatttgatccatgtagccgaccccacttagtggg 49347414  T
Q  100 ataaggcttggttattgttgta 121  Q
    ||||||||||||| ||||||||    
T  49347413 ataaggcttggttgttgttgta 49347392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 52532740 - 52532619
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttag 95  Q
    ||||||||  ||||||||||| | |||||||||||| | || |||||| |||||||||||||||| |||||     || ||||| | || ||||||||||    
T  52532740 aactattaggaaagatttagaaattaatgagttggaacaaaatatggtttatgatagaacattatggcgtaatttgattcatgtagccgaccccacttag 52532641  T
Q  96 tgagataaggcttggttattgt 117  Q
    || || ||||||||||| ||||    
T  52532640 tgggaaaaggcttggttgttgt 52532619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 52561703 - 52561590
Alignment:
Q  11 aaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcg-----taatccatgtcgtcggccccacttagtgagataagg 105  Q
    ||||||||||||  ||||||||||||||||| |||||| |  | ||||||||||| |||     | |||||||| | || |||||||||||| |||||||    
T  52561703 aaagatttagaggttaatgagttggatccaaatatggtttcgggtagaacattatggcgaaatttgatccatgtagccgaccccacttagtgggataagg 52561604  T
Q  106 cttggttattgttg 119  Q
    ||||||| ||||||    
T  52561603 cttggttgttgttg 52561590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 121
Target Start/End: Original strand, 52921242 - 52921363
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgag 99  Q
    |||| ||| |||||||||   ||||| |||||||||| |||||| |||||||||||| ||| |||| ||     |||||| | || |||||||||||| |    
T  52921242 attagaaaggatttagaggtcaatgaattggatccaaatatggtttatgatagaacactattgcgtcatttgatccatgtagccgaccccacttagtggg 52921341  T
Q  100 ataaggcttggttattgttgta 121  Q
    ||||||||||||| ||||||||    
T  52921342 ataaggcttggttgttgttgta 52921363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 1210907 - 1211027
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgag 99  Q
    |||| ||| |||||||||   |||||||||||||||| | |||| |||||||||||| ||| |||| ||     |||||| | || |||||||||||| |    
T  1210907 attagaaaggatttagaggtcaatgagttggatccaaatttggtgtatgatagaacactatggcgtcatttgatccatgtagccgaccccacttagtggg 1211006  T
Q  100 ataaggcttggttattgttgt 120  Q
    ||||||||||||| |||||||    
T  1211007 ataaggcttggttgttgttgt 1211027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 10200429 - 10200369
Alignment:
Q  2 actattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacat 62  Q
    ||||||| ||||||||||||||   ||||||||||||||| |||||| |||||||||||||    
T  10200429 actattagaaaagatttagagatcgatgagttggatccaaatatggtttatgatagaacat 10200369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 27520331 - 27520267
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    |||||||| |||| ||||||||| ||||||| ||||||||| |||| | ||||||||||||||||    
T  27520331 aactattagaaaaaatttagagattaatgagctggatccaaatatgatttatgatagaacattat 27520267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 33 - 120
Target Start/End: Complemental strand, 28090786 - 28090694
Alignment:
Q  33 tggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    ||||||||| |||||| |||||||||||||||| |||||     |||||||| | || |||||||||||| |||||| ||||||| |||||||    
T  28090786 tggatccaaatatggtttatgatagaacattatggcgtaatttgatccatgtagccgaccccacttagtgggataagacttggttgttgttgt 28090694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 120
Target Start/End: Complemental strand, 30202250 - 30202130
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgag 99  Q
    |||| ||| |||||||||   |||||||||||||||| | |||| |||||||||||| ||| |||| ||     |||||| | || |||||||||||| |    
T  30202250 attagaaaggatttagaggtcaatgagttggatccaaatttggtgtatgatagaacactatggcgtcatttgatccatgtagccgaccccacttagtggg 30202151  T
Q  100 ataaggcttggttattgttgt 120  Q
    ||||||||||||| |||||||    
T  30202150 ataaggcttggttgttgttgt 30202130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 120
Target Start/End: Complemental strand, 37311875 - 37311755
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcg-----taatccatgtcgtcggccccacttagtgag 99  Q
    |||| |||||||||||||   |||||||||||||||| |||||| | |||||||||| ||| |||     | |||||||| | || |||||||||||| |    
T  37311875 attagaaaagatttagaggtcaatgagttggatccaaatatggtttttgatagaacactatggcgtcatttgatccatgtagccgaccccacttagtggg 37311776  T
Q  100 ataaggcttggttattgttgt 120  Q
    | ||||||||||| |||||||    
T  37311775 aaaaggcttggttgttgttgt 37311755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 40416529 - 40416593
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    ||||||||| |||||| || ||| |||||||||||||| || |||||| ||||||||||||||||    
T  40416529 aactattaagaaagatctatagattaatgagttggatcgaaatatggtttatgatagaacattat 40416593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 43375722 - 43375658
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    ||||||||| ||||||||||||| |||||||||||| | || ||||||  |||||||||||||||    
T  43375722 aactattaagaaagatttagagattaatgagttggaccgaaatatggttcatgatagaacattat 43375658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 117
Target Start/End: Original strand, 42501269 - 42501387
Alignment:
Q  4 tattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcg-----taatccatgtcgtcggccccacttagtga 98  Q
    |||||| |||||| || ||| |||||||||||||  || ||||| |||||||||||||||| ||||     |||||||||| | || ||| ||||||||     
T  42501269 tattaagaaagatctatagattaatgagttggatagaaatatggaatatgatagaacattacagcgtcgtttaatccatgtagccgaccctacttagtgg 42501368  T
Q  99 gataaggcttggttattgt 117  Q
    ||||| | |||||||||||    
T  42501369 gataaagtttggttattgt 42501387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 37462986 - 37462878
Alignment:
Q  14 gatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgagataaggctt 108  Q
    |||||||||  ||||||||| |||| || |||||| ||| |||||||||||| |||||||     |||||| | || |||||||||||| ||||||||||    
T  37462986 gatttagaggttaatgagtttgatcaaa-tatggtttatcatagaacattatggcgtaatttgatccatgtagccgaccccacttagtgggataaggctt 37462888  T
Q  109 ggttattgtt 118  Q
    |||| |||||    
T  37462887 ggttgttgtt 37462878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 52878420 - 52878351
Alignment:
Q  4 tattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat 73  Q
    ||||| |||||||||||||  |||||||||| ||||||||| | | ||||||||||| |||||| |||||    
T  52878420 tattataaaagatttagaggttaatgagttgaatccaactacgatttatgatagaactttatagtgtaat 52878351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 3818980 - 3818916
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    ||||||||| ||||||||||||| |||||||||| ||  || |||||| |||||| |||||||||    
T  3818980 aactattaagaaagatttagagattaatgagttgaatagaaatatggtttatgatggaacattat 3818916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 6025764 - 6025824
Alignment:
Q  2 actattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacat 62  Q
    |||| |||||||||| |||||| |||||||||||||  || |||||||| |||||||||||    
T  6025764 actagtaaaaaagatctagagattaatgagttggatagaaatatggtatctgatagaacat 6025824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 7762561 - 7762497
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    |||||||| ||||||||||||   |||||||||||||| || |||||| ||| ||||||||||||    
T  7762561 aactattagaaaagatttagatgttaatgagttggatctaaatatggtttataatagaacattat 7762497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 29577266 - 29577203
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    ||||||||| |||||| |||||| ||||||| |||||| || |||||| ||||||||||||||||    
T  29577266 aactattaagaaagatctagagattaatgagctggatcaaaatatggt-tatgatagaacattat 29577203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 32404650 - 32404527
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttag 95  Q
    ||||||||  ||||||||||||| |||||||||  ||||||  ||||| ||||||| ||||| || |||||     |||||||| | || ||||||||||    
T  32404650 aactattaggaaagatttagagattaatgagttaaatccaaacatggtttatgatataacataatggcgtaatttgatccatgtagccgaccccacttag 32404551  T
Q  96 tgagataaggcttggttattgttgt 120  Q
    || |||||||| ||||| |||||||    
T  32404550 tgggataaggc-tggttgttgttgt 32404527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 39318291 - 39318359
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat 73  Q
    |||| ||| |||||||||   |||||||||||||||| |||||| |||||||||||| ||| |||||||    
T  39318291 attagaaaggatttagaggtcaatgagttggatccaaatatggtttatgatagaacactatggcgtaat 39318359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 4001575 - 4001520
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaac 60  Q
    ||||||||||||||||||   |||||||||||||||| |||||| | |||||||||    
T  4001575 attaaaaaagatttagaggtcaatgagttggatccaaatatggtttttgatagaac 4001520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 6084150 - 6084205
Alignment:
Q  18 tagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat 73  Q
    |||||| |||||||||||||| || |||||| |||||||||||| ||| |||||||    
T  6084150 tagagattaatgagttggatcaaaatatggtttatgatagaacaatatggcgtaat 6084205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 8676989 - 8676954
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttgga 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  8676989 aactattaaaaaagatttagagattaatgagttgga 8676954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 13827687 - 13827640
Alignment:
Q  18 tagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    |||||| |||||||||||||  || |||||||||||||||||||||||    
T  13827687 tagagattaatgagttggatagaaatatggtatatgatagaacattat 13827640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 121
Target Start/End: Complemental strand, 21769793 - 21769710
Alignment:
Q  43 tatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgagataaggcttggttattgttgta 121  Q
    |||||| | |||||||||||||| |||||||     |||||| | || |||||||||||| |||||||||||||| ||||||||    
T  21769793 tatggtttgtgatagaacattatggcgtaatttgatccatgtagccgaccccacttagtgtgataaggcttggttgttgttgta 21769710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 121
Target Start/End: Complemental strand, 25715432 - 25715325
Alignment:
Q  19 agagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgagataaggcttggtta 113  Q
    ||||| |||||||||| | | || |||||| |||||||||| ||||| |||||||     |||||| | || || ||||||||| ||||||||||||||     
T  25715432 agagattaatgagttgaaccgaaatatggtttatgatagaatattatggcgtaatttgatccatgtagccgacctcacttagtgggataaggcttggttg 25715333  T
Q  114 ttgttgta 121  Q
    ||||||||    
T  25715332 ttgttgta 25715325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 8672080 - 8672145
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgt 70  Q
    |||| ||| |||||||||   |||||||||||||||| | |||| |||||||||||| ||||||||    
T  8672080 attagaaaggatttagaggtcaatgagttggatccaaatttggtgtatgatagaacactatagcgt 8672145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 10569195 - 10569130
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattata 66  Q
    ||||||||| |||||| |||||| |||| || |||||  || ||| ||||||||||||||||||||    
T  10569195 aactattaagaaagatctagagattaataagctggatagaaatatcgtatatgatagaacattata 10569130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 37099811 - 37099762
Alignment:
Q  71 aatccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    ||||||||| | ||||||||||| ||| || |||||||||||||||||||    
T  37099811 aatccatgtagccggccccacttggtgggaaaaggcttggttattgttgt 37099762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 120
Target Start/End: Complemental strand, 37430453 - 37430420
Alignment:
Q  87 cccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||||||||||||||||||||| |||||||    
T  37430453 cccacttagtgagataaggcttggttgttgttgt 37430420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 39140673 - 39140794
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttag 95  Q
    ||||||||  ||| ||||||||  |||| |||||||||||| |||||| |  ||||||||||||| |||||     || ||||| | || ||||||||||    
T  39140673 aactattaggaaaaatttagaggttaattagttggatccaaatatggtttcagatagaacattatggcgtaatttgattcatgtagccgaccccacttag 39140772  T
Q  96 tgagataaggcttggttattgt 117  Q
    || ||||| |||||||| ||||    
T  39140773 tgggataatgcttggttgttgt 39140794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 40568509 - 40568408
Alignment:
Q  26 aatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    ||||||||||| | || |||||| |||||||||| | ||| |||||||     |||||| | |  |||||||||||| |||||||||||||| |||||||    
T  40568509 aatgagttggaccaaaatatggtttatgatagaaaactatggcgtaatttgatccatgtagccaaccccacttagtgggataaggcttggttgttgttgt 40568410  T
Q  121 ag 122  Q
    ||    
T  40568409 ag 40568408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 40920642 - 40920589
Alignment:
Q  12 aagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    ||||| |||||| |||||||||||||  || ||||||||||||||||| |||||    
T  40920642 aagatctagagattaatgagttggatagaaatatggtatatgatagaatattat 40920589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 120
Target Start/End: Complemental strand, 44941865 - 44941776
Alignment:
Q  36 atccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||| | |||| |||||||||||| ||| |||||||     |||||| | || |||||||||||| |||||||||||||| |||||||    
T  44941865 atccaaatttggtttatgatagaacactatggcgtaatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 44941776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 121
Target Start/End: Complemental strand, 50771587 - 50771554
Alignment:
Q  88 ccacttagtgagataaggcttggttattgttgta 121  Q
    ||||||||||||||||||||||||| ||||||||    
T  50771587 ccacttagtgagataaggcttggttgttgttgta 50771554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 990570 - 990518
Alignment:
Q  13 agatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    |||| |||||| |||||||||||||| |  |||||| ||||||||||||||||    
T  990570 agatctagagattaatgagttggatcaacatatggtttatgatagaacattat 990518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 9599518 - 9599446
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat 73  Q
    ||||||||  ||| ||||||||  ||||||||| ||||||  |||||| ||||||||||| |||| |||||||    
T  9599518 aactattaggaaatatttagagtttaatgagtttgatccagatatggtttatgatagaacgttatggcgtaat 9599446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 19936618 - 19936690
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat 73  Q
    ||||||||  |||||||||||   ||||||||| ||||||| ||||||  ||||||||||||||  |||||||    
T  19936618 aactattaggaaagatttagatgttaatgagttagatccaaatatggttaatgatagaacattacggcgtaat 19936690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 29577486 - 29577534
Alignment:
Q  72 atccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||| | || |||||||||||| |||||||||||||| |||||||    
T  29577486 atccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 29577534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 42539260 - 42539212
Alignment:
Q  72 atccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||| | || |||||||||||| || |||||||||||||||||||    
T  42539260 atccatgtagacgaccccacttagtgggaaaaggcttggttattgttgt 42539212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 43481846 - 43481798
Alignment:
Q  72 atccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||| | || |||||||||||| |||||||||||||| |||||||    
T  43481846 atccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 43481798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 52)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 120
Target Start/End: Original strand, 55007907 - 55008028
Alignment:
Q  4 tattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttagtga 98  Q
    |||||| ||||||||||||| |||||||||||| | || |||||| ||||||||| ||||||  ||||     |||||||| | || ||||||||||||     
T  55007907 tattaagaaagatttagagattaatgagttggaccgaaatatggtttatgatagatcattatgacgtaatttgatccatgtagccgaccccacttagtgg 55008006  T
Q  99 gataaggcttggttattgttgt 120  Q
    |||||||||||||| |||||||    
T  55008007 gataaggcttggttgttgttgt 55008028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 26037629 - 26037506
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttag 95  Q
    ||||||||  ||||||||||||   |||||||||||||||| |||||| |||||||||||| ||| |||||     |||||||| | || ||||||||||    
T  26037629 aactattaggaaagatttagaggtgaatgagttggatccaaatatggtttatgatagaacactatggcgtaattggatccatgtagccgaccccacttag 26037530  T
Q  96 tgagataaggcttggttattgttg 119  Q
    || ||||||| |||||| ||||||    
T  26037529 tgggataaggtttggttgttgttg 26037506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 34208378 - 34208269
Alignment:
Q  16 tttagagaataatgagttggatccaactatggtatatgatagaacattatagcg-----taatccatgtcgtcggccccacttagtgagataaggcttgg 110  Q
    |||||||| ||||||||||||||||| |||||| |||||||||||||||| |||     | ||||||||  ||| |||| |||| || ||||||||||||    
T  34208378 tttagagattaatgagttggatccaaatatggtttatgatagaacattatggcgcaatttgatccatgtactcgaccccccttattgggataaggcttgg 34208279  T
Q  111 ttattgttgt 120  Q
    || |||||||    
T  34208278 ttgttgttgt 34208269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 5 - 121
Target Start/End: Complemental strand, 48622663 - 48622542
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgt-----aatccatgtcgtcggccccacttagtgag 99  Q
    |||| |||||||||||||   |||||||| ||||||| | |||| |||||||||||| ||| ||||     ||||||||| | || |||||||||||| |    
T  48622663 attagaaaagatttagaggtcaatgagtttgatccaaatttggtgtatgatagaacactatggcgtcatttaatccatgtagccgaccccacttagtggg 48622564  T
Q  100 ataaggcttggttattgttgta 121  Q
    ||||||||||||| ||||||||    
T  48622563 ataaggcttggttgttgttgta 48622542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 25574982 - 25575106
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttag 95  Q
    ||||||||| |||||| |||||| |||||||||||||| || |||||| |||||||||||||| | | |||     |||||||| |  | ||||| ||||    
T  25574982 aactattaagaaagatctagagattaatgagttggatcgaaatatggtttatgatagaacattgtggtgtaatttgatccatgtagcagaccccatttag 25575081  T
Q  96 tgagataaggcttggttattgttgt 120  Q
    || |||||||||||||| |||||||    
T  25575082 tgggataaggcttggttgttgttgt 25575106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 27049301 - 27049229
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat 73  Q
    ||||||||| ||||||||| ||| ||||||||||| ||||| |||||| |||||| ||||||||| |||||||    
T  27049301 aactattaagaaagatttatagattaatgagttggttccaaatatggtttatgatcgaacattatggcgtaat 27049229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 31959938 - 31959814
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcg-----taatccatgtcgtcggccccacttag 95  Q
    |||||||| ||| |||||||||   |||||||||||||||| | |||| |||||||||||| ||| |||     | |||||||| | || ||||||||||    
T  31959938 aactattagaaaggatttagaggtcaatgagttggatccaaatttggtgtatgatagaacactatggcgtcatttgatccatgtagccgaccccacttag 31959839  T
Q  96 tgagataaggcttggttattgttgt 120  Q
    || |||||||||||||| |||||||    
T  31959838 tgggataaggcttggttgttgttgt 31959814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 118
Target Start/End: Complemental strand, 55388333 - 55388213
Alignment:
Q  3 ctattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtg 97  Q
    ||||||| |||||||| |||| ||||||||| |||| || |||| | |||||||||||||| | | |||||     |||||| |||| ||||||||||||    
T  55388333 ctattaagaaagatttggagattaatgagttagatcgaaatatgatttatgatagaacattgtggtgtaatttgatccatgttgtcgaccccacttagtg 55388234  T
Q  98 agataaggcttggttattgtt 118  Q
     |||||||||||||| |||||    
T  55388233 ggataaggcttggttgttgtt 55388213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 26024974 - 26024851
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttag 95  Q
    ||||||||| |||||| |||||| |||||||||||||| |   ||||| |||||||||||||||| | |||     |||||||| | || || |||||||    
T  26024974 aactattaagaaagatctagagattaatgagttggatcgagacatggtttatgatagaacattatggtgtaattttatccatgtagccgacctcacttag 26024875  T
Q  96 tgagataaggcttggttattgttg 119  Q
    || |||||||||||||| ||||||    
T  26024874 tgggataaggcttggttgttgttg 26024851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 39100635 - 39100536
Alignment:
Q  26 aatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||||||||||| ||| || ||| |||||||||||| |||||||     |||||| | || |||||||||||| |||||||||||||| |||||||    
T  39100635 aatgagttggatccaaatattgtttatcatagaacattatggcgtaatataatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 39100536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 31459152 - 31459273
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcg-----taatccatgtcgtcggccccacttag 95  Q
    ||||||||  ||||||||||||| ||||||||||||||| | |||||| | |||| ||||||||| |||     | ||||||||   || ||||||||||    
T  31459152 aactattaggaaagatttagagattaatgagttggatcccaatatggtgtgtgattgaacattatggcggaacttgatccatgtacccgaccccacttag 31459251  T
Q  96 tgagataaggcttggttattgt 117  Q
    || |||||||||||||| ||||    
T  31459252 tgggataaggcttggttgttgt 31459273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 120
Target Start/End: Complemental strand, 1777137 - 1777017
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcg-----taatccatgtcgtcggccccacttagtgag 99  Q
    |||| |||||||||||||   |||||||||||||||| | |||| |||||||||||| ||| |||     | |||||||| | || ||||||||| || |    
T  1777137 attagaaaagatttagaggtcaatgagttggatccaaatttggtgtatgatagaacagtatggcgtcatttgatccatgtagccgaccccacttaatggg 1777038  T
Q  100 ataaggcttggttattgttgt 120  Q
    ||||||||||||| |||||||    
T  1777037 ataaggcttggttgttgttgt 1777017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 30621325 - 30621261
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    ||||||||| ||||||||||||| ||||| |||||| | || |||||| ||||||||||||||||    
T  30621325 aactattaagaaagatttagagattaatgtgttggaccgaaatatggtttatgatagaacattat 30621261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 31043230 - 31043290
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaaca 61  Q
    ||||||||  ||||||||||||| ||||||||||||||||| |||||| | ||||||||||    
T  31043230 aactattaggaaagatttagagattaatgagttggatccaaatatggtttgtgatagaaca 31043290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 35690429 - 35690553
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttag 95  Q
    ||||||||  ||| ||||||||  ||||||||| |||||||  | ||| |||||||||||||||| |||||     |||||||| | || ||||||||||    
T  35690429 aactattacgaaaaatttagaggttaatgagtttgatccaatcagggtttatgatagaacattatggcgtaatttgatccatgtagccgaccccacttag 35690528  T
Q  96 tgagataaggcttggttattgttgt 120  Q
    || |||||| ||||||| |||||||    
T  35690529 tgggataagacttggtttttgttgt 35690553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 37488249 - 37488373
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttag 95  Q
    ||||||||| |||||| |||| | |||| |||| |||| || ||||||  |||||||| |||||| |||||||     |||||| | | |||||||||||    
T  37488249 aactattaagaaagatctagaaattaataagtttgatcaaaatatggttaatgatagagcattatggcgtaatttgatccatgtagccagccccacttag 37488348  T
Q  96 tgagataaggcttggttattgttgt 120  Q
    || |||||||||||||| |||||||    
T  37488349 tgggataaggcttggttgttgttgt 37488373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 112
Target Start/End: Original strand, 39708595 - 39708707
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttagtgag 99  Q
    |||| ||| |||||||||   |||||||||||||||| |||||| |||||||||||| |||  ||||     |||||||| |||| |||||||||||| |    
T  39708595 attagaaaggatttagaggtcaatgagttggatccaaatatggtttatgatagaacactatgtcgtaatttgatccatgtagtcgaccccacttagtggg 39708694  T
Q  100 ataaggcttggtt 112  Q
    ||||| |||||||    
T  39708695 ataagacttggtt 39708707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 120
Target Start/End: Complemental strand, 52569635 - 52569515
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgag 99  Q
    |||| ||| |||||||||   |||||||||||||||| | |||| |||||||||||| ||| |||| ||     |||||| | || |||||||||||| |    
T  52569635 attagaaaggatttagaggtcaatgagttggatccaaatttggtgtatgatagaacactatggcgtcatttgatccatgtagccgaccccacttagtggg 52569536  T
Q  100 ataaggcttggttattgttgt 120  Q
    ||||||||||||| |||||||    
T  52569535 ataaggcttggttgttgttgt 52569515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 56439695 - 56439623
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat 73  Q
    ||||||||  |||||||| || | |||| ||||||||| || |||||| ||||||||||||||||||||||||    
T  56439695 aactattatgaaagatttggaaattaattagttggatcgaaatatggtttatgatagaacattatagcgtaat 56439623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 45204963 - 45204900
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacatta 64  Q
    ||||||||  ||||||||||||  |||| |||||||||||| |||||| |||||||||||||||    
T  45204963 aactattaggaaagatttagagtttaataagttggatccaaatatggtttatgatagaacatta 45204900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 47265294 - 47265195
Alignment:
Q  26 aatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||||||||||| | || | |||||||||||| ||||| |||||     |||||| | || || ||||||||| ||||||||||||||||||||||    
T  47265294 aatgagttggatccaaatttgatctatgatagaacactatagtgtaatttgatccatgtagccgacctcacttagtgggataaggcttggttattgttgt 47265195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 53518437 - 53518375
Alignment:
Q  11 aaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat 73  Q
    ||||||||||||  |||||||||||||| || |||||| |||||||||||| ||| |||||||    
T  53518437 aaagatttagaggttaatgagttggatctaaatatggtttatgatagaacactatggcgtaat 53518375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 42639144 - 42639075
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgt 70  Q
    ||||||||| |||||| ||| || |||||||||||||  || |||||||| |||||||||||||| ||||    
T  42639144 aactattaagaaagatctagcgattaatgagttggatagaaatatggtatttgatagaacattatggcgt 42639075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 8286601 - 8286721
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgag 99  Q
    |||| ||| |||||||||   |||||||||||||||| | |||| |||||||||||| |||  ||| ||     |||||| | || |||||||||||| |    
T  8286601 attagaaaggatttagaggtcaatgagttggatccaaatttggtttatgatagaacactatgacgtcatttgatccatgtagccgcccccacttagtggg 8286700  T
Q  100 ataaggcttggttattgttgt 120  Q
    ||||||||||||| |||||||    
T  8286701 ataaggcttggttgttgttgt 8286721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 21528450 - 21528570
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcg-----taatccatgtcgtcggccccacttagtgag 99  Q
    |||| |||||||||||||   |||||||||||| ||| |||||| | |||||||||| ||| | |     | |||||||| | || |||||||||||| |    
T  21528450 attagaaaagatttagaggtcaatgagttggattcaaatatggtttttgatagaacactatggtggcatttgatccatgtagccgaccccacttagtggg 21528549  T
Q  100 ataaggcttggttattgttgt 120  Q
    ||||||||||||| |||||||    
T  21528550 ataaggcttggttgttgttgt 21528570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 26510558 - 26510610
Alignment:
Q  13 agatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    ||||||||||| ||||||||||||||||| |||||| |  |||||||||||||    
T  26510558 agatttagagattaatgagttggatccaaatatggtttgcgatagaacattat 26510610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 49987566 - 49987638
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat 73  Q
    ||||||||| ||||| || ||||  |||||| ||||||||||||||||  |||||||| |||||| |||||||    
T  49987566 aactattaagaaagacttggagataaatgagatggatccaactatggttcatgatagagcattatggcgtaat 49987638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 51421888 - 51421952
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    ||||||||  ||||||||||||  |||||| ||||||||||  ||||| ||||||||||||||||    
T  51421888 aactattaggaaagatttagaggttaatgaattggatccaaaaatggtttatgatagaacattat 51421952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 55768623 - 55768555
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcg 69  Q
    |||| |||| ||||| ||| |||  ||||||||||||| || |||||| ||||||||||||||||||||    
T  55768623 aactgttaagaaagaattaaagatcaatgagttggatcaaagtatggtgtatgatagaacattatagcg 55768555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 55832879 - 55832811
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcg 69  Q
    |||| |||| ||||| ||| |||  ||||||||||||| || |||||| ||||||||||||||||||||    
T  55832879 aactgttaagaaagaattaaagatcaatgagttggatcaaagtatggtgtatgatagaacattatagcg 55832811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 5306471 - 5306526
Alignment:
Q  18 tagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat 73  Q
    |||||| ||||||||||||||||| |||||| ||||| | |||||||| |||||||    
T  5306471 tagagattaatgagttggatccaaatatggtttatgacataacattatggcgtaat 5306526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 31339699 - 31339746
Alignment:
Q  18 tagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    |||||| |||||||||||||| || ||||||| |||||||||||||||    
T  31339699 tagagattaatgagttggatcgaaatatggtacatgatagaacattat 31339746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 41192229 - 41192283
Alignment:
Q  11 aaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    |||||| |||||| |||||||||||||  || ||||||||||| |||||||||||    
T  41192229 aaagatctagagattaatgagttggatagaaatatggtatatggtagaacattat 41192283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 54980315 - 54980361
Alignment:
Q  256 tggacaaagcttctgttcttggaaaagctataaggtacttaaagcaa 302  Q
    |||| |||||||||||||||||| ||| |||||||||||| ||||||    
T  54980315 tggataaagcttctgttcttggagaagatataaggtacttgaagcaa 54980361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 21237020 - 21237085
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgt 70  Q
    |||| ||| |||||||||   |||||||||||||||| | ||||||||||||||||| ||| ||||    
T  21237020 attagaaaggatttagaggtcaatgagttggatccaaatttggtatatgatagaacactatggcgt 21237085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 37042788 - 37042667
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcg-----taatccatgtcgtcggccccacttag 95  Q
    ||||||||| |||||| |||||| || ||||||||||  || || ||||| |||||||||||||| | |     | |||||||| | || ||| ||||||    
T  37042788 aactattaagaaagatctagagattattgagttggatagaaatacggtatttgatagaacattatggtgtcgtttgatccatgtagccgacccgacttag 37042689  T
Q  96 tgagataaggcttggttattgt 117  Q
    || |||||||||||||| ||||    
T  37042688 tgggataaggcttggttgttgt 37042667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 41729549 - 41729504
Alignment:
Q  26 aatgagttggatccaactatggtatatgatagaacattatagcgta 71  Q
    |||||||||||||||| |||||| |||||||||||| ||| |||||    
T  41729549 aatgagttggatccaaatatggtttatgatagaacactatggcgta 41729504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 47147531 - 47147593
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    ||||||||| |||||| |||||| |||||||||||||  |  |||| ||||||||||||||||||    
T  47147531 aactattaagaaagatctagagattaatgagttggat--agatatgatatatgatagaacattat 47147593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 120
Target Start/End: Complemental strand, 48451106 - 48451073
Alignment:
Q  87 cccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||||||||||||||||||||| |||||||    
T  48451106 cccacttagtgagataaggcttggttgttgttgt 48451073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 120
Target Start/End: Original strand, 56130403 - 56130452
Alignment:
Q  71 aatccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    ||||||||| | || |||||||||||| |||||||||||||| |||||||    
T  56130403 aatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 56130452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 436463 - 436511
Alignment:
Q  72 atccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||| | || |||||||||||| |||||||||||||| |||||||    
T  436463 atccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 436511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 21107150 - 21107214
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    ||||||||  |||| ||||| || |||| |||||||||||| |||||| ||||||||||| ||||    
T  21107150 aactattaggaaagttttagtgattaattagttggatccaaatatggtttatgatagaactttat 21107214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 30634154 - 30634106
Alignment:
Q  72 atccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||| | || |||||||||||| |||||||||||||| |||||||    
T  30634154 atccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 30634106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 34233148 - 34233076
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat 73  Q
    ||||||| | |||||  |||||| ||||||||| |||| || || ||| |||||||||||||| |||||||||    
T  34233148 aactattcataaagacctagagattaatgagttagatcaaaataaggtttatgatagaacattgtagcgtaat 34233076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 40420336 - 40420275
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacatta 64  Q
    ||||||||||||| ||  ||||| |||||||||| |||| | |||||| |||||||||||||||    
T  40420336 aactattaaaaaaaat--agagattaatgagttgaatcctaatatggtttatgatagaacatta 40420275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 43434158 - 43434206
Alignment:
Q  72 atccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||| ||||  ||||||||||| |||||||||||||| |||||||    
T  43434158 atccatgtagtcgagcccacttagtgggataaggcttggttgttgttgt 43434206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 44384988 - 44385052
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    ||||||||| |||||| |||||| |||| ||||||||   | |||||| ||||||||||||||||    
T  44384988 aactattaagaaagatctagagattaataagttggatattaatatggtttatgatagaacattat 44385052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 45209253 - 45209205
Alignment:
Q  72 atccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||| | || |||||||||||| |||||||||||||| |||||||    
T  45209253 atccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 45209205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 46153942 - 46153990
Alignment:
Q  72 atccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||| | || |||||||||||| |||||||||||||| |||||||    
T  46153942 atccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 46153990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 47372809 - 47372873
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    ||||| ||| ||||||  ||||| |||||||||||||  || |||||||||| ||||||||||||    
T  47372809 aactactaataaagatccagagattaatgagttggatagaaatatggtatattatagaacattat 47372873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 50238663 - 50238615
Alignment:
Q  72 atccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||| | || |||||||||||| |||||||||||||| |||||||    
T  50238663 atccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 50238615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 50238749 - 50238701
Alignment:
Q  72 atccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||| | || |||||||||||| |||||||||||||| |||||||    
T  50238749 atccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 50238701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 418148 - 418086
Alignment:
Q  11 aaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat 73  Q
    ||||||||||||| ||||||||||||||||| | |||| |||||||||||||||| |||||||    
T  418148 aaagatttagagattaatgagttggatccaaatgtggtttatgatagaacattatggcgtaat 418086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 120
Target Start/End: Complemental strand, 13561506 - 13561386
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcg-----taatccatgtcgtcggccccacttagtgag 99  Q
    |||| |||||||||||||   ||||||||||||||||||||||| | |||||||||| ||| |||     | |||||||| | || |||||||||||| |    
T  13561506 attagaaaagatttagaggtcaatgagttggatccaactatggtttttgatagaacactatggcgtcatttgatccatgtagccgaccccacttagtggg 13561407  T
Q  100 ataaggcttggttattgttgt 120  Q
    |||||||||| || |||||||    
T  13561406 ataaggcttgtttgttgttgt 13561386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 14667939 - 14667993
Alignment:
Q  11 aaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    |||||| |||||| ||||||||||||||||| |||||| ||||||||||||||||    
T  14667939 aaagatctagagattaatgagttggatccaagtatggtttatgatagaacattat 14667993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 121
Target Start/End: Original strand, 3302006 - 3302127
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgag 99  Q
    |||| |||||||||||||   |||||||||||||||| |||||| | |||||||||| ||  |||| ||     |||||| | || |||||||||||| |    
T  3302006 attataaaagatttagaggtcaatgagttggatccaaatatggtttttgatagaacactacggcgtcatttgatccatgtagccgaccccacttagtggg 3302105  T
Q  100 ataaggcttggttattgttgta 121  Q
    ||||||||||||| ||||||||    
T  3302106 ataaggcttggttgttgttgta 3302127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 11675699 - 11675812
Alignment:
Q  13 agatttagagaataatgagttggatcc-aactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttagtgagataaggc 106  Q
    ||||||||||| |||||||||||||   || |||||| |||||||||||||||| |||||     |||||||| | || |||||||||||  ||||||||    
T  11675699 agatttagagattaatgagttggattttaaatatggtttatgatagaacattatggcgtagtttaatccatgtagccgaccccacttagttggataaggc 11675798  T
Q  107 ttggttattgttgt 120  Q
    |||||| |||||||    
T  11675799 ttggttgttgttgt 11675812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 120
Target Start/End: Complemental strand, 2915615 - 2915496
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgag 99  Q
    |||| ||| |||||||||   |||||||||||||||| | |||| |||||||||||| ||| |||| ||     |||||| | || |||||||||||| |    
T  2915615 attagaaaggatttagaggtcaatgagttggatccaaatttggt-tatgatagaacactatggcgtcatttgatccatgtagccgaccccacttagtggg 2915517  T
Q  100 ataaggcttggttattgttgt 120  Q
    |||||||||||||||||||||    
T  2915516 ataaggcttggttattgttgt 2915496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 9235205 - 9235269
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    ||||||||| |||||| |||||| ||||||| |||||| || |||||| ||||||||||||||||    
T  9235205 aactattaagaaagatatagagattaatgagctggatcgaaatatggtttatgatagaacattat 9235269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 17340560 - 17340496
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    ||||||||| ||||||||||||  ||||||||| ||||||| |||||| ||||||| ||||||||    
T  17340560 aactattaagaaagatttagaggttaatgagtttgatccaaatatggtttatgatataacattat 17340496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 29816544 - 29816664
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgag 99  Q
    |||| ||| |||||||||   |||||||||||||||| | |||| |||||||||||| ||| |||| ||     |||||| | || |||||||||||| |    
T  29816544 attagaaaggatttagaggtcaatgagttggatccaaatttggtgtatgatagaacactatggcgtcatttgatccatgtagccgaccccacttagtggg 29816643  T
Q  100 ataaggcttggttattgttgt 120  Q
    ||||||||||||| |||||||    
T  29816644 ataaggcttggttgttgttgt 29816664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 112
Target Start/End: Original strand, 38685129 - 38685241
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcg-----taatccatgtcgtcggccccacttagtgag 99  Q
    |||| ||| |||||||||   |||||||||||||||| |||||| |||||||||||| ||| |||     | |||||||| | || |||||||||||| |    
T  38685129 attagaaaggatttagaggtcaatgagttggatccaaatatggtttatgatagaacaatatggcgtcatttgatccatgtagccgaccccacttagtggg 38685228  T
Q  100 ataaggcttggtt 112  Q
    |||||||||||||    
T  38685229 ataaggcttggtt 38685241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 120
Target Start/End: Original strand, 18855798 - 18855889
Alignment:
Q  34 ggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||| |||||| ||||||||||||||||||| ||     |||||||| | || |||||||||||| |||||| ||||||| |||||||    
T  18855798 ggatccaaatatggtttatgatagaacattatagcataatttgatccatgtagccgaccccacttagtgggataagacttggttgttgttgt 18855889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 123
Target Start/End: Complemental strand, 43557947 - 43557830
Alignment:
Q  11 aaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttagtgagataagg 105  Q
    |||||||| |||| || ||||||||||| || |||||| ||||||||||||||||  | ||     ||| |||| | || |||||||||||| |||||||    
T  43557947 aaagatttggagattattgagttggatcgaaatatggtttatgatagaacattatgacttaagttgatctatgtagccgaccccacttagtgggataagg 43557848  T
Q  106 cttggttattgttgtagt 123  Q
    | ||||| ||||||||||    
T  43557847 cctggttgttgttgtagt 43557830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 116
Target Start/End: Complemental strand, 1287699 - 1287583
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaa-----tccatgtcgtcggccccacttagtgag 99  Q
    |||| ||| |||||||||   |||||||||||||||| | |||| |||||||| ||| ||| |||| |     ||||||| | || |||||||||||| |    
T  1287699 attagaaaggatttagaggtcaatgagttggatccaaatttggtgtatgatagtacactatggcgtcagttgatccatgtagccgaccccacttagtggg 1287600  T
Q  100 ataaggcttggttattg 116  Q
    |||||||||||||||||    
T  1287599 ataaggcttggttattg 1287583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 4496546 - 4496666
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgag 99  Q
    |||| ||| |||||||||   |||||||||||||||| | |||| |||||||||||| ||| || | ||     |||||| | || |||||||||||| |    
T  4496546 attagaaaggatttagaggtcaatgagttggatccaaatttggtgtatgatagaacactatggcatcatttgatccatgtagccgaccccacttagtggg 4496645  T
Q  100 ataaggcttggttattgttgt 120  Q
    ||||||||||||| |||||||    
T  4496646 ataaggcttggttgttgttgt 4496666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 6889151 - 6889223
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat 73  Q
    ||||||||  ||||||||||||| |||| ||||||  | || |||||| |||||||||||||||| |||||||    
T  6889151 aactattaggaaagatttagagattaattagttgggccaaaatatggtttatgatagaacattatggcgtaat 6889223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 12576984 - 12576920
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    ||||||||| |||||| |||||| |||||||||| ||  || |||||||||||||||| ||||||    
T  12576984 aactattaagaaagatctagagattaatgagttgaatagaaatatggtatatgatagaccattat 12576920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 120
Target Start/End: Complemental strand, 32442225 - 32442126
Alignment:
Q  25 taatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgagataaggcttggttattgttg 119  Q
    ||||||||||||||||| |||||| |  ||||||||||||| |||||||     |||||| | || | |||||||||| |||||| ||||||||||||||    
T  32442225 taatgagttggatccaaatatggttttggatagaacattatggcgtaatttgatccatgtagccgactccacttagtgggataag-cttggttattgttg 32442127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 36551380 - 36551428
Alignment:
Q  72 atccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||| | || ||||||||||||||||||||||||||| |||||||    
T  36551380 atccatgtagccgaccccacttagtgagataaggcttggttgttgttgt 36551428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 5558324 - 5558415
Alignment:
Q  26 aatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttagtgagataaggcttggtt 112  Q
    ||||||| |||||||| |||||| |||||||||||| ||| || ||     |||||||| | || |||||||||||| ||||||||||||||    
T  5558324 aatgagtaggatccaaatatggtttatgatagaacactatggcataatttgatccatgtagccgaccccacttagtgggataaggcttggtt 5558415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 50 - 120
Target Start/End: Original strand, 38132543 - 38132618
Alignment:
Q  50 tatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||||||||||| |||||||     |||||| | || |||||||||||| |||||||||||||| |||||||    
T  38132543 tatgatagaacattatggcgtaatttgatccatgtggccgaccccacttagtgggataaggcttggttgttgttgt 38132618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 41894234 - 41894277
Alignment:
Q  11 aaagatttagagaataatgagttggatccaactatggtatatga 54  Q
    ||||||||||||| ||||||||||||||||| |||||| |||||    
T  41894234 aaagatttagagattaatgagttggatccaaatatggtttatga 41894277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 120
Target Start/End: Complemental strand, 9460862 - 9460828
Alignment:
Q  86 ccccacttagtgagataaggcttggttattgttgt 120  Q
    ||||||||||| |||||||||||||||||||||||    
T  9460862 ccccacttagtaagataaggcttggttattgttgt 9460828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 5303602 - 5303729
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaa--ctatggtatatgatagaacattatagcg------taatccatgtcgtcggccccact 92  Q
    ||||||| ||||||||||||||  |||||||||||||  ||   ||||||||||||||||| ||||| |||      |||||||||| | ||  ||||||    
T  5303602 aactattgaaaaagatttagagtttaatgagttggatagaaatatatggtatatgatagaatattatggcgttgttttaatccatgtagccgatcccact 5303701  T
Q  93 tagtgagataaggcttggttattgttgt 120  Q
    ||||| |||||| | ||||| |||||||    
T  5303702 tagtgggataagtcctggttgttgttgt 5303729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 408542 - 408494
Alignment:
Q  72 atccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||| | || |||||||||||| |||||||||||||| |||||||    
T  408542 atccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 408494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 2645224 - 2645272
Alignment:
Q  72 atccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||| | |||||| |||||||| |||||||||||||| |||||||    
T  2645224 atccatgtagccggccctacttagtgggataaggcttggttgttgttgt 2645272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 14725676 - 14725736
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaaca 61  Q
    |||||||| |||||||||| ||  |||||||||||||| || |||||| |||||| |||||    
T  14725676 aactattataaaagatttaaaggttaatgagttggatcaaaatatggtttatgatcgaaca 14725736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 23980102 - 23980162
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaaca 61  Q
    ||||||| | || |||||| ||| |||||||||||||| || |||||| ||||||||||||    
T  23980102 aactattgagaatgatttatagattaatgagttggatctaaatatggtttatgatagaaca 23980162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 28186899 - 28186863
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggat 37  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  28186899 aactattaagaaagatttagagattaatgagttggat 28186863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 32489294 - 32489330
Alignment:
Q  86 ccccacttagtgagataaggcttggttattgttgtag 122  Q
    |||||||||||| |||||||||||||| |||||||||    
T  32489294 ccccacttagtgggataaggcttggttgttgttgtag 32489330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 35615441 - 35615505
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    ||||||| | ||| ||||||||| |||||||||||||  || ||| || ||||||||||||||||    
T  35615441 aactattcataaaaatttagagattaatgagttggataaaaatatagtttatgatagaacattat 35615505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 38830504 - 38830601
Alignment:
Q  27 atgagttggatccaactatggtatatgatagaacattatagcgtaat----ccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||||| | || |||| | ||||||||||||||||||||||||    |||||| |  | |||||||||||| || |||| |||||| |||||||    
T  38830504 atgagttggaccgaaatatgatgtatgatagaacattatagcgtaattgatccatgtagctgaccccacttagtgggaaaaggtttggttgttgttgt 38830601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 12890758 - 12890857
Alignment:
Q  26 aatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||| ||||||| |||||| |||||||||||| ||| |||||||     |||||| | || |||||||||||| |||||||||||||| |||||||    
T  12890758 aatgagttagatccaaatatggtttatgatagaacactatggcgtaatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 12890857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 120
Target Start/End: Complemental strand, 34625 - 34505
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttagtgag 99  Q
    ||||| |||||| || ||| |||||||||||||  || |||||| |||||||||||||||| |||||     |||||||| |  | |||||||||||| |    
T  34625 attaagaaagatctaaagattaatgagttggattgaaatatggtttatgatagaacattatggcgtaatttgatccatgtagctgaccccacttagtggg 34526  T
Q  100 ataaggcttggttattgttgt 120  Q
    ||||| ||||||| |||||||    
T  34525 ataagacttggttgttgttgt 34505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 9593832 - 9593768
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    ||||||||  ||||| ||||||| ||||||||||||||| | |||||| ||||||||||||||||    
T  9593832 aactattaggaaagacttagagattaatgagttggatcccaatatggtttatgatagaacattat 9593768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 9706941 - 9707053
Alignment:
Q  14 gatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgagataaggctt 108  Q
    |||||||||  ||||||||||||||||| |||||| | |||||||||| ||| || | ||     |||||| | || |||||||||||| ||||||||||    
T  9706941 gatttagaggttaatgagttggatccaaatatggtttttgatagaacactatggcatcatttgatccatgtagccgaccccacttagtgggataaggctt 9707040  T
Q  109 ggttattgttgta 121  Q
    |||| ||||||||    
T  9707041 ggttgttgttgta 9707053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 120
Target Start/End: Complemental strand, 34143885 - 34143765
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgag 99  Q
    |||| ||| |||||||||   |||||||||||||||| | |||| |||||||||||| ||| |||| ||     |||||| |||| ||||||||| || |    
T  34143885 attacaaaggatttagaggtcaatgagttggatccaaatttggtgtatgatagaacactatggcgtcatttgatccatgtagtcgaccccacttattggg 34143786  T
Q  100 ataaggcttggttattgttgt 120  Q
    ||||||||||||| |||||||    
T  34143785 ataaggcttggttgttgttgt 34143765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 120
Target Start/End: Complemental strand, 34156501 - 34156381
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgag 99  Q
    |||| ||| |||||||||   |||||||||||||||| | |||| |||||||||||| ||| |||| ||     |||||| |||| ||||||||| || |    
T  34156501 attacaaaggatttagaggtcaatgagttggatccaaatttggtgtatgatagaacactatggcgtcatttgatccatgtagtcgaccccacttattggg 34156402  T
Q  100 ataaggcttggttattgttgt 120  Q
    ||||||||||||| |||||||    
T  34156401 ataaggcttggttgttgttgt 34156381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 3206574 - 3206459
Alignment:
Q  10 aaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgagataag 104  Q
    |||||||||||||   |||||||||||||||| |||||| | | |||||||| ||| |||| ||     |||||| | || |||||||||||| ||||||    
T  3206574 aaaagatttagaggtcaatgagttggatccaaatatggtttttaatagaacactatggcgtcatttgatccatgtagccgaccccacttagtgggataag 3206475  T
Q  105 gcttggttattgttgt 120  Q
     |||||||||||||||    
T  3206474 acttggttattgttgt 3206459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 5096002 - 5096117
Alignment:
Q  11 aaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttagtgagataagg 105  Q
    |||||||||| |  |||||||||||||| || |||||| |||||||||||||||| |||||     ||| |||| | ||  ||||||||||| |||||||    
T  5096002 aaagatttagtggttaatgagttggatcaaaatatggtttatgatagaacattatggcgtaatttgatctatgtagccgatcccacttagtgggataagg 5096101  T
Q  106 cttggttattgttgta 121  Q
     |||||| ||||||||    
T  5096102 tttggttgttgttgta 5096117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 31818689 - 31818814
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgta-----atccatgtcgtcggccccacttag 95  Q
    ||||||||  |||| ||| |||| |||||||||||||| || |||||| ||||||||||||||||  ||||     |||||||| | || ||||||||||    
T  31818689 aactattaggaaaggtttggagattaatgagttggatcaaagtatggtttatgatagaacattatgtcgtaatttgatccatgtagccgaccccacttag 31818788  T
Q  96 tgagataaggcttggttattgttgta 121  Q
     | || || |||||||| ||||||||    
T  31818789 cgggaaaaagcttggttgttgttgta 31818814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 34934929 - 34934828
Alignment:
Q  26 aatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||||||||||| | |||| |||||||||||| ||| || | ||     |||||| | || |||||||||||| |||||||||||||| |||||||    
T  34934929 aatgagttggatccaaatttggtgtatgatagaacactatggcctcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 34934830  T
Q  121 ag 122  Q
    ||    
T  34934829 ag 34934828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 5897615 - 5897679
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    |||||||| |||||||||||| | ||||| |||||||| || ||||||||||| ||||| |||||    
T  5897615 aactattagaaaagatttagatattaatgtgttggatcaaaatatggtatatggtagaatattat 5897679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 14389285 - 14389213
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat 73  Q
    |||| |||| ||||||||||||| |||| |||| ||||||| |||||| ||||||| |||||||  |||||||    
T  14389285 aactcttaagaaagatttagagattaataagttagatccaaatatggtttatgatataacattagggcgtaat 14389213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 24665969 - 24666033
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    ||||||||| ||| ||||||||   ||||||||||||| || |||||| ||||||||||||||||    
T  24665969 aactattaagaaatatttagaggtcaatgagttggatcgaaatatggtttatgatagaacattat 24666033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 28085538 - 28085658
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgag 99  Q
    |||| ||| |||||||||   |||||||||||||||| | |||| |||||||||||| ||| | || ||     |||||| | || |||||||||||| |    
T  28085538 attagaaaggatttagaggtcaatgagttggatccaaatttggtgtatgatagaacactatggtgtcatttgatccatgtagccgaccccacttagtggg 28085637  T
Q  100 ataaggcttggttattgttgt 120  Q
    ||||||||||||| |||||||    
T  28085638 ataaggcttggttgttgttgt 28085658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 1748069 - 1748006
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacatta 64  Q
    ||||| ||| ||| ||||||||| |||||||||||||  || ||| ||||||||||||||||||    
T  1748069 aactactaagaaaaatttagagattaatgagttggatagaaatatagtatatgatagaacatta 1748006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 43176 - 43119
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgataga 58  Q
    ||||||||| |||||| |||||| |||||||||||||| || ||| || |||||||||    
T  43176 aactattaataaagatctagagagtaatgagttggatcaaaatatagtttatgataga 43119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 9568872 - 9568929
Alignment:
Q  16 tttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat 73  Q
    |||||||| || |||||||||||||| |||||| ||||||||| | |||| |||||||    
T  9568872 tttagagattattgagttggatccaaatatggtttatgatagaccgttatggcgtaat 9568929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 117
Target Start/End: Original strand, 30031418 - 30031535
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat-----ccatgtcgtcggccccacttagtgag 99  Q
    |||| ||| |||||||||   ||||||||||||  || |||||| |||||||||||| ||| |||||||     |||||| | || || ||||||||| |    
T  30031418 attagaaaggatttagaggtcaatgagttggatttaaatatggtttatgatagaacactatggcgtaatttgatccatgtagccgacctcacttagtggg 30031517  T
Q  100 ataaggcttggttattgt 117  Q
    ||||||||||||| ||||    
T  30031518 ataaggcttggttgttgt 30031535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 32756083 - 32756148
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgt 70  Q
    |||| |||||||||||||   |||||||||||||||| | |||| |||||||||||| ||| ||||    
T  32756083 attagaaaagatttagaggtcaatgagttggatccaaatttggtgtatgatagaacactatggcgt 32756148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 8364714 - 8364786
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat 73  Q
    ||||||||| ||||||||||| | |||| |||||||   ||  ||||| |||||||||||||||| |||||||    
T  8364714 aactattaagaaagatttagaaattaataagttggactgaaacatggtttatgatagaacattatggcgtaat 8364786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 10099014 - 10098958
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaaca 61  Q
    ||||||||||||||||||   ||||||||||||  || |||||| ||||||||||||    
T  10099014 attaaaaaagatttagaggtcaatgagttggatttaaatatggtgtatgatagaaca 10098958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 12133950 - 12133902
Alignment:
Q  72 atccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||| | || ||||||||||||||| ||||||||||| |||||||    
T  12133950 atccatgtagccgaccccacttagtgagaaaaggcttggttgttgttgt 12133902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 118
Target Start/End: Original strand, 20864835 - 20864867
Alignment:
Q  86 ccccacttagtgagataaggcttggttattgtt 118  Q
    ||||||||||||||||||||||||||| |||||    
T  20864835 ccccacttagtgagataaggcttggttgttgtt 20864867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 33730199 - 33730247
Alignment:
Q  72 atccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||| | || |||||||||||| |||||||||||||| |||||||    
T  33730199 atccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 33730247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 120
Target Start/End: Complemental strand, 1068 - 948
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcg-----taatccatgtcgtcggccccacttagtgag 99  Q
    ||||||||||||||||||   |||||||||||||||| | |||| |||||||||||| ||| |||     | |||||||| |  | ||||| |||||| |    
T  1068 attaaaaaagatttagaggtcaatgagttggatccaaatttggtgtatgatagaacactatggcgtcatttgatccatgtagctgaccccatttagtggg 969  T
Q  100 ataaggcttggttattgttgt 120  Q
    ||||||||||||| |||||||    
T  968 ataaggcttggttgttgttgt 948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 121
Target Start/End: Original strand, 16740 - 16861
Alignment:
Q  5 attaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcg-----taatccatgtcgtcggccccacttagtgag 99  Q
    |||| |||||||||||||   |||||||||||||||| |||||| | |||||||||| ||| |||     | ||| |||| | || | |||||||||| |    
T  16740 attagaaaagatttagaggtcaatgagttggatccaaatatggtttttgatagaacactatggcgtcatttgatctatgtagccgactccacttagtggg 16839  T
Q  100 ataaggcttggttattgttgta 121  Q
    ||||||||||||| ||||||||    
T  16840 ataaggcttggttgttgttgta 16861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 39487 - 39549
Alignment:
Q  11 aaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat 73  Q
    |||||||||||   ||||||||||||||||| | |||| ||||||||||||| || |||||||    
T  39487 aaagatttagatggtaatgagttggatccaaatgtggtttatgatagaacatgatggcgtaat 39549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 25568 - 25503
Alignment:
Q  1 aactattaaaaaa-gatttagagaataatgagttggatccaactatggtatatgatagaacattat 65  Q
    ||||||||||||| |||||||||| |||||||||||||  || || | ||||||||| ||||||||    
T  25568 aactattaaaaaatgatttagagattaatgagttggatagaaataagttatatgataaaacattat 25503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 17697 - 17733
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggat 37  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  17697 aactattaaaaaagatttagagattaatgggttggat 17733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 28937 - 28889
Alignment:
Q  72 atccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||| | || |||||||||||| |||||||||||||| |||||||    
T  28937 atccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 28889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 31702 - 31750
Alignment:
Q  72 atccatgtcgtcggccccacttagtgagataaggcttggttattgttgt 120  Q
    |||||||| | || |||||||||||| |||||||||||||| |||||||    
T  31702 atccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 31750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 160448 - 160376
Alignment:
Q  1 aactattaaaaaagatttagagaataatgagttggatccaactatggtatatgatagaacattatagcgtaat 73  Q
    ||||||||  ||||||| ||| | ||||||||| || | || |||||| |||||||||||||||| |||||||    
T  160448 aactattaggaaagattaagaaattaatgagttcgaccgaaatatggtttatgatagaacattatggcgtaat 160376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University