View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14684_high_41 (Length: 294)

Name: NF14684_high_41
Description: NF14684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14684_high_41
NF14684_high_41
[»] chr8 (19 HSPs)
chr8 (1-287)||(19399718-19400004)
chr8 (3-285)||(19536668-19536950)
chr8 (1-287)||(19380024-19380310)
chr8 (80-287)||(19357997-19358203)
chr8 (28-287)||(19348959-19349215)
chr8 (85-287)||(19499839-19500041)
chr8 (80-287)||(19339974-19340180)
chr8 (158-287)||(19290205-19290334)
chr8 (85-287)||(19169815-19170017)
chr8 (79-285)||(19258190-19258394)
chr8 (80-287)||(19407998-19408202)
chr8 (80-287)||(19455018-19455222)
chr8 (80-287)||(19525855-19526059)
chr8 (80-287)||(19416078-19416282)
chr8 (80-287)||(19486153-19486357)
chr8 (80-287)||(19479899-19480103)
chr8 (80-287)||(19550823-19551027)
chr8 (80-287)||(19581661-19581865)
chr8 (79-267)||(19274085-19274273)
[»] chr1 (1 HSPs)
chr1 (206-287)||(36310797-36310878)


Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 19400004 - 19399718
Alignment:
Q  1 aggaacattgcgtgtatacttttacagacacaggaaatgagtatatttcataaacaaaaaccatattcagatgatttttattacttatattttcccttct 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  19400004 aggaacattgcgagtatacttttacagacacaggaaatgagtatatttcaaaaacaaaaaccatattcaggtgatttttattacttatattttcccttct 19399905  T
Q  101 acttcacatgaggtagaaattgtagtcgtagaataggtgatggtgtcttcccctttggaagttgtttccccttcaaagatctctcttctaaaataaaatg 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  19399904 acttcacatgaggtagaaattgttgtcgtagaataggtgatggcgtcttcccctttggaagttgtttccccttcaaagatctctcgtctaatataaaatg 19399805  T
Q  201 ctagtcttcttggtaaggttgtgagttcatatttgtttgctaacattgatatcacatccgacattgtaggtcaatcatttgcatatt 287  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  19399804 ctggtcttcttggtaaggttgtgagttcatatttgtttgctaacattgatatcacatccgacattgtaggtcgatcatttgcatatt 19399718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 3 - 285
Target Start/End: Original strand, 19536668 - 19536950
Alignment:
Q  3 gaacattgcgtgtatacttttacagacacaggaaatgagtatatttcataaacaaaaaccatattcagatgatttttattacttatattttcccttctac 102  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  19536668 gaacattgcgagtatacttttacagacacagaaaatgagtatatttcataaacaaaatccatattcaggtgatttttattacttatattttcccttctac 19536767  T
Q  103 ttcacatgaggtagaaattgtagtcgtagaataggtgatggtgtcttcccctttggaagttgtttccccttcaaagatctctcttctaaaataaaatgct 202  Q
    ||||||||||| ||||||||| |||||||||||||||  |||||||| ||||||||||||||||||||| |||||||| | |||||||| ||| ||||||    
T  19536768 ttcacatgaggaagaaattgttgtcgtagaataggtgtcggtgtctttccctttggaagttgtttccccctcaaagatatttcttctaacatagaatgct 19536867  T
Q  203 agtcttcttggtaaggttgtgagttcatatttgtttgctaacattgatatcacatccgacattgtaggtcaatcatttgcata 285  Q
     |||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||| ||||||||||||    
T  19536868 ggtcttcttggtaaggttgtgagttcatatttgtttgttaacattgatataacatcagacattgtaggtcgatcatttgcata 19536950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 19380310 - 19380024
Alignment:
Q  1 aggaacattgcgtgtatacttttacagacacaggaaatgagtatatttcataaacaaaaaccatattcagatgatttttattacttatattttcccttct 100  Q
    |||||||||||| ||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||    
T  19380310 aggaacattgcgagtatacttttacagatacatgaaatgaatatatttcataaacaaaaaccatattcaagcgatttttattacttatattttcccttct 19380211  T
Q  101 acttcacatgaggtagaaattgtagtcgtagaataggtgatggtgtcttcccctttggaagttgtttccccttcaaagatctctcttctaaaataaaatg 200  Q
    |||||| |||||||||||||||| |||||||||||||||  |||||||| |||||| |||||||||||||| ||||||||||||||||||| ||| ||||    
T  19380210 acttcaaatgaggtagaaattgttgtcgtagaataggtgtcggtgtcttgccctttagaagttgtttccccctcaaagatctctcttctaacatagaatg 19380111  T
Q  201 ctagtcttcttggtaaggttgtgagttcatatttgtttgctaacattgatatcacatccgacattgtaggtcaatcatttgcatatt 287  Q
    || || ||||||| ||| |||||||| ||||||||||||  |||| |||||| || || ||||||||||||| |||||| |||||||    
T  19380110 ctggttttcttggcaagtttgtgagtacatatttgtttgtcaacactgatataacttcagacattgtaggtcgatcattagcatatt 19380024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 80 - 287
Target Start/End: Complemental strand, 19358203 - 19357997
Alignment:
Q  80 attacttatattttcccttctacttcacatgaggtagaaattgtagtcgtagaataggtgatggtgtcttcccctttggaagttgtttccccttcaaaga 179  Q
    |||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||  |||||||  |||||| |||||||||||||| ||| |||    
T  19358203 attacttatattttcc-ttctacttcacatgaggtagaaattgctgtcgtagaataggtgtcggtgtctggccctttagaagttgtttccccgtcataga 19358105  T
Q  180 tctctcttctaaaataaaatgctagtcttcttggtaaggttgtgagttcatatttgtttgctaacattgatatcacatccgacattgtaggtcaatcatt 279  Q
    |||||||||||| ||| |||||| ||||||||||||| |||||||||||||||||||||| |||||||||||| ||||| ||||||||||||| ||||||    
T  19358104 tctctcttctaatatagaatgctggtcttcttggtaaagttgtgagttcatatttgtttgttaacattgatataacatcggacattgtaggtcgatcatt 19358005  T
Q  280 tgcatatt 287  Q
     |||||||    
T  19358004 agcatatt 19357997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 28 - 287
Target Start/End: Complemental strand, 19349215 - 19348959
Alignment:
Q  28 acacaggaaatgagtatatttcataaacaaaaaccatattcagatgatttttattacttatattttcccttctacttcacatgaggtagaaattgtagtc 127  Q
    |||||| |||||||||| ||| |||||| |||||||||| |||  |||  |||||| ||||||||||||||||   |||||||| ||||||||||  |||    
T  19349215 acacagaaaatgagtatgttttataaaccaaaaccatatacaggcgatgcttattatttatattttcccttct---tcacatgaagtagaaattgctgtc 19349119  T
Q  128 gtagaataggtgatggtgtcttcccctttggaagttgtttccccttcaaagatctctcttctaaaataaaatgctagtcttcttggtaaggttgtgagtt 227  Q
    ||||||||||||  |||||||| |||||||||| |||||||||| ||||||||||||||||||| |||||||||| |||||||||||||| |||||||||    
T  19349118 gtagaataggtgtcggtgtcttgccctttggaaattgtttccccctcaaagatctctcttctaacataaaatgctggtcttcttggtaagtttgtgagtt 19349019  T
Q  228 catatttgtttgctaacattgatatcacatccgacattgtaggtcaatcatttgcatatt 287  Q
      |||||||||| |||||  ||||| ||||| |||||||| |||| ||||||||||||||    
T  19349018 ggtatttgtttgttaacacagatataacatcagacattgttggtcgatcatttgcatatt 19348959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 85 - 287
Target Start/End: Original strand, 19499839 - 19500041
Alignment:
Q  85 ttatattttcccttctacttcacatgaggtagaaattgtagtcgtagaataggtgatggtgtcttcccctttggaagttgtttccccttcaaagatctct 184  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||  |||||||| |||||| |||||||||||||| ||||||||||||    
T  19499839 ttatattttcccttctacttcacatgaggtagaaattgctgtcgtagaataggtgtcggtgtcttgccctttagaagttgtttccccctcaaagatctct 19499938  T
Q  185 cttctaaaataaaatgctagtcttcttggtaaggttgtgagttcatatttgtttgctaacattgatatcacatccgacattgtaggtcaatcatttgcat 284  Q
    ||||||| |||||||||| | |||||||| ||| |||||||||||||||||||||  |||| |||||| || || ||||||||||||| || ||||||||    
T  19499939 cttctaacataaaatgctggccttcttggcaagtttgtgagttcatatttgtttgtcaacactgatataacttcagacattgtaggtcgattatttgcat 19500038  T
Q  285 att 287  Q
    |||    
T  19500039 att 19500041  T

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Target: chr8; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 80 - 287
Target Start/End: Complemental strand, 19340180 - 19339974
Alignment:
Q  80 attacttatattttcccttctacttcacatgaggtagaaattgtagtcgtagaataggtgatggtgtcttcccctttggaagttgtttccccttcaaaga 179  Q
    |||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||  |||||||  |||||| |||||||||||||| ||| |||    
T  19340180 attacttatattttcc-ttctacttcacatgaggtagaaattgctgtcgtagaataggtgtcggtgtctggccctttagaagttgtttccccgtcataga 19340082  T
Q  180 tctctcttctaaaataaaatgctagtcttcttggtaaggttgtgagttcatatttgtttgctaacattgatatcacatccgacattgtaggtcaatcatt 279  Q
    |||||||||||| ||| |||||  ||||||||||||| |||||||||| ||||||||||| |||||||||||| ||||| ||||||||||||| ||||||    
T  19340081 tctctcttctaatatagaatgccggtcttcttggtaaagttgtgagtttatatttgtttgttaacattgatataacatcggacattgtaggtcgatcatt 19339982  T
Q  280 tgcatatt 287  Q
     |||||||    
T  19339981 agcatatt 19339974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 158 - 287
Target Start/End: Complemental strand, 19290334 - 19290205
Alignment:
Q  158 gaagttgtttccccttcaaagatctctcttctaaaataaaatgctagtcttcttggtaaggttgtgagttcatatttgtttgctaacattgatatcacat 257  Q
    |||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19290334 gaagttgtttccccttcaaagatctctcttctaacataaaatgccggtcttcttggtaaggttgtgagttcatatttgtttgctaacattgatatcacat 19290235  T
Q  258 ccgacattgtaggtcaatcatttgcatatt 287  Q
    ||||||||||||| | ||||||||||||||    
T  19290234 ccgacattgtaggacgatcatttgcatatt 19290205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 85 - 287
Target Start/End: Original strand, 19169815 - 19170017
Alignment:
Q  85 ttatattttcccttctacttcacatgaggtagaaattgtagtcgtagaataggtgatggtgtcttcccctttggaagttgtttccccttcaaagatctct 184  Q
    ||||||||||||||||||||||||||| |||||||||| |||| |||||||||||   || |||  |||||| ||||||||||||||||| |||||||||    
T  19169815 ttatattttcccttctacttcacatgatgtagaaattgcagtcatagaataggtgtcagtatctagccctttagaagttgtttccccttcgaagatctct 19169914  T
Q  185 cttctaaaataaaatgctagtcttcttggtaaggttgtgagttcatatttgtttgctaacattgatatcacatccgacattgtaggtcaatcatttgcat 284  Q
    ||  ||| |||||||||| |||||||||||||||||||  || | |||||||||| |||||||||||| ||||| ||||||||||||| || ||||||||    
T  19169915 ctggtaacataaaatgctggtcttcttggtaaggttgtcggtgcgtatttgtttgttaacattgatataacatcagacattgtaggtcgattatttgcat 19170014  T
Q  285 att 287  Q
    |||    
T  19170015 att 19170017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 79 - 285
Target Start/End: Complemental strand, 19258394 - 19258190
Alignment:
Q  79 tattacttatattttcccttctacttcacatgaggtagaaattgtagtcgtagaataggtgatggtgtcttcccctttggaagttgtttccccttcaaag 178  Q
    |||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||     |||   | ||||  |||||||||||||||||| |    
T  19258394 tattacttatattttcccttctacttcac--gaggtagaaattgttgtcgtagaataggtgtcacagtccgacactttcaaagttgtttccccttcaagg 19258297  T
Q  179 atctctcttctaaaataaaatgctagtcttcttggtaaggttgtgagttcatatttgtttgctaacattgatatcacatccgacattgtaggtcaatcat 278  Q
    ||||||||| ||||||| |||||| |||||||||| | ||||||||||||||||||||||| ||||| |||||| ||||| |||||||| |||| |||||    
T  19258296 atctctcttgtaaaatagaatgctggtcttcttggcatggttgtgagttcatatttgtttgttaacactgatataacatcagacattgttggtcgatcat 19258197  T
Q  279 ttgcata 285  Q
    |||||||    
T  19258196 ttgcata 19258190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 80 - 287
Target Start/End: Complemental strand, 19408202 - 19407998
Alignment:
Q  80 attacttatattttcccttctacttcacatgaggtagaaattgtagtcgtagaataggtgatggtgtcttcccctttggaagttgtttccccttcaaaga 179  Q
    |||| |||||||||||||||||||||||| |||||||||||||| ||   ||||||||||  |||||||  | |||| ||||||||||| |  ||||  |    
T  19408202 attatttatattttcccttctacttcacacgaggtagaaattgttgt---agaataggtgtcggtgtctggcactttagaagttgtttctctatcaagaa 19408106  T
Q  180 tctctcttctaaaataaaatgctagtcttcttggtaaggttgtgagttcatatttgtttgctaacattgatatcacatccgacattgtaggtcaatcatt 279  Q
    | |||||||||| |||||||||| ||||||| ||||  |||||||||||||||||||||| |||||||||||| ||||| ||||||||||||| ||||||    
T  19408105 tgtctcttctaacataaaatgctggtcttctaggtattgttgtgagttcatatttgtttgttaacattgatataacatcagacattgtaggtcgatcatt 19408006  T
Q  280 tgcatatt 287  Q
    ||||||||    
T  19408005 tgcatatt 19407998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 80 - 287
Target Start/End: Complemental strand, 19455222 - 19455018
Alignment:
Q  80 attacttatattttcccttctacttcacatgaggtagaaattgtagtcgtagaataggtgatggtgtcttcccctttggaagttgtttccccttcaaaga 179  Q
    |||| |||||||||||||||||||||||| |||||||||||||| ||   ||||||||||  |||||||  | |||| ||||||||||| |  ||||  |    
T  19455222 attatttatattttcccttctacttcacacgaggtagaaattgttgt---agaataggtgtcggtgtctggcactttagaagttgtttctctatcaagaa 19455126  T
Q  180 tctctcttctaaaataaaatgctagtcttcttggtaaggttgtgagttcatatttgtttgctaacattgatatcacatccgacattgtaggtcaatcatt 279  Q
    | |||||||||| |||||||||| ||||||| ||||  |||||||||||||||||||||| |||||||||||| ||||| ||||||||||||| ||||||    
T  19455125 tgtctcttctaacataaaatgctggtcttctgggtattgttgtgagttcatatttgtttgttaacattgatataacatcagacattgtaggtcgatcatt 19455026  T
Q  280 tgcatatt 287  Q
    ||||||||    
T  19455025 tgcatatt 19455018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 80 - 287
Target Start/End: Original strand, 19525855 - 19526059
Alignment:
Q  80 attacttatattttcccttctacttcacatgaggtagaaattgtagtcgtagaataggtgatggtgtcttcccctttggaagttgtttccccttcaaaga 179  Q
    |||| |||||||||||||||||||||||| |||||||||||||| ||   ||||||||||  |||||||  | |||| ||||||||||| |  ||||  |    
T  19525855 attatttatattttcccttctacttcacacgaggtagaaattgttgt---agaataggtgtcggtgtctggcactttagaagttgtttctctatcaagaa 19525951  T
Q  180 tctctcttctaaaataaaatgctagtcttcttggtaaggttgtgagttcatatttgtttgctaacattgatatcacatccgacattgtaggtcaatcatt 279  Q
    | |||||||||| |||||||||| ||||||| ||||  |||||||||||||||||||||| |||||||||||| ||||| ||||||||||||| ||||||    
T  19525952 tgtctcttctaacataaaatgctggtcttctgggtattgttgtgagttcatatttgtttgttaacattgatataacatcagacattgtaggtcgatcatt 19526051  T
Q  280 tgcatatt 287  Q
    ||||||||    
T  19526052 tgcatatt 19526059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 80 - 287
Target Start/End: Complemental strand, 19416282 - 19416078
Alignment:
Q  80 attacttatattttcccttctacttcacatgaggtagaaattgtagtcgtagaataggtgatggtgtcttcccctttggaagttgtttccccttcaaaga 179  Q
    |||| ||||| |||||||||||||||||| |||||||||||||| ||   ||||||||||  |||||||  | |||| ||||||||||| || ||||  |    
T  19416282 attatttatactttcccttctacttcacacgaggtagaaattgttgt---agaataggtgtcggtgtctggcactttagaagttgtttctccatcaagaa 19416186  T
Q  180 tctctcttctaaaataaaatgctagtcttcttggtaaggttgtgagttcatatttgtttgctaacattgatatcacatccgacattgtaggtcaatcatt 279  Q
    | |||||||||| |||||||||| ||||||| ||||  |||||||||||||||||||||| |||||||| ||| ||||| ||||||||||||| ||||||    
T  19416185 tgtctcttctaacataaaatgctggtcttctgggtattgttgtgagttcatatttgtttgttaacattgctataacatcagacattgtaggtcgatcatt 19416086  T
Q  280 tgcatatt 287  Q
    ||||||||    
T  19416085 tgcatatt 19416078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 80 - 287
Target Start/End: Complemental strand, 19486357 - 19486153
Alignment:
Q  80 attacttatattttcccttctacttcacatgaggtagaaattgtagtcgtagaataggtgatggtgtcttcccctttggaagttgtttccccttcaaaga 179  Q
    |||| ||||||||||||||| |||||||| |||||||||||||| ||   ||||||||||  |||||||  | |||| ||||||||||| || ||||  |    
T  19486357 attatttatattttcccttccacttcacacgaggtagaaattgttgt---agaataggtgtcggtgtctggcactttagaagttgtttctccatcaagaa 19486261  T
Q  180 tctctcttctaaaataaaatgctagtcttcttggtaaggttgtgagttcatatttgtttgctaacattgatatcacatccgacattgtaggtcaatcatt 279  Q
    | || ||||||| |||||||||| ||||||| ||||  |||||||||||||||||||||| |||||||||||| ||||| ||||||||||||| ||||||    
T  19486260 tgtcccttctaacataaaatgctggtcttctgggtattgttgtgagttcatatttgtttgttaacattgatataacatcagacattgtaggtcgatcatt 19486161  T
Q  280 tgcatatt 287  Q
    ||||||||    
T  19486160 tgcatatt 19486153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 80 - 287
Target Start/End: Original strand, 19479899 - 19480103
Alignment:
Q  80 attacttatattttcccttctacttcacatgaggtagaaattgtagtcgtagaataggtgatggtgtcttcccctttggaagttgtttccccttcaaaga 179  Q
    |||| ||||| |||||||||||||||||| |||| ||||||||| ||   ||||||||||  | |||||  | |||| ||||||||||| || ||||  |    
T  19479899 attatttatactttcccttctacttcacacgaggaagaaattgttgt---agaataggtgtagatgtctggcactttagaagttgtttctccatcaagaa 19479995  T
Q  180 tctctcttctaaaataaaatgctagtcttcttggtaaggttgtgagttcatatttgtttgctaacattgatatcacatccgacattgtaggtcaatcatt 279  Q
    | |||||||||| |||||||||| ||||||| ||||  |||||||||||||||||||||| |||||||||||| ||||| ||||||||||||| ||||||    
T  19479996 tgtctcttctaacataaaatgctggtcttctgggtattgttgtgagttcatatttgtttgttaacattgatataacatcagacattgtaggtcgatcatt 19480095  T
Q  280 tgcatatt 287  Q
    ||||||||    
T  19480096 tgcatatt 19480103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 80 - 287
Target Start/End: Original strand, 19550823 - 19551027
Alignment:
Q  80 attacttatattttcccttctacttcacatgaggtagaaattgtagtcgtagaataggtgatggtgtcttcccctttggaagttgtttccccttcaaaga 179  Q
    |||| ||||| |||||||||||||||||| |||| ||||||||| ||   ||||||||||  | |||||  | |||| ||||||||||| || ||||  |    
T  19550823 attatttatactttcccttctacttcacacgaggaagaaattgttgt---agaataggtgtagatgtctggcactttagaagttgtttctccatcaagaa 19550919  T
Q  180 tctctcttctaaaataaaatgctagtcttcttggtaaggttgtgagttcatatttgtttgctaacattgatatcacatccgacattgtaggtcaatcatt 279  Q
    | |||||||||| |||||||||| ||||||| ||||  |||||||||||||||||||||| |||||||||||| ||||| ||||||||||||| ||||||    
T  19550920 tgtctcttctaacataaaatgctggtcttctgggtattgttgtgagttcatatttgtttgttaacattgatataacatcagacattgtaggtcgatcatt 19551019  T
Q  280 tgcatatt 287  Q
    ||||||||    
T  19551020 tgcatatt 19551027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 80 - 287
Target Start/End: Complemental strand, 19581865 - 19581661
Alignment:
Q  80 attacttatattttcccttctacttcacatgaggtagaaattgtagtcgtagaataggtgatggtgtcttcccctttggaagttgtttccccttcaaaga 179  Q
    |||| ||||| |||||||||||||||||| |||| ||||||||| ||   ||||||||||  | |||||  | |||| ||||||||||| || ||||  |    
T  19581865 attatttatactttcccttctacttcacacgaggaagaaattgttgt---agaataggtgtagatgtctggcactttagaagttgtttctccatcaagaa 19581769  T
Q  180 tctctcttctaaaataaaatgctagtcttcttggtaaggttgtgagttcatatttgtttgctaacattgatatcacatccgacattgtaggtcaatcatt 279  Q
    | |||||||||| |||||||||| ||||||| ||||  |||||||||||||||||||||| |||||||||||| ||||| ||||||||||||| ||||||    
T  19581768 tgtctcttctaacataaaatgctggtcttctgggtattgttgtgagttcatatttgtttgttaacattgatataacatcggacattgtaggtcgatcatt 19581669  T
Q  280 tgcatatt 287  Q
    ||||||||    
T  19581668 tgcatatt 19581661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 79 - 267
Target Start/End: Original strand, 19274085 - 19274273
Alignment:
Q  79 tattacttatattttcccttctacttcacatgaggtagaaattgtagtcgtagaataggtgatggtgtcttcccctttggaagttgtttccccttcaaag 178  Q
    ||||| |||||||||| |||||||||||||||||||||||||    ||| ||||||| |||   |||||   | |||  |||||||||||||| ||||||    
T  19274085 tattatttatattttctcttctacttcacatgaggtagaaatcactgtcatagaatatgtgtcagtgtcggacacttacgaagttgtttccccgtcaaag 19274184  T
Q  179 atctctcttctaaaataaaatgctagtcttcttggtaaggttgtgagttcatatttgtttgctaacattgatatcacatccgacattgt 267  Q
    || |||||||||| ||| ||  || || ||||||||||||||||||||||||||||||||| ||||| ||| || ||||| ||||||||    
T  19274185 atttctcttctaacatagaacccttgttttcttggtaaggttgtgagttcatatttgtttgttaacaatgacataacatcagacattgt 19274273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 287
Target Start/End: Original strand, 36310797 - 36310878
Alignment:
Q  206 cttcttggtaaggttgtgagttcatatttgtttgctaacattgatatcacatccgacattgtaggtcaatcatttgcatatt 287  Q
    ||||| ||| |||||| |||||||| |||||||| |||||||||||| ||||| |||||||| |||| ||||||||||||||    
T  36310797 cttctcggtgaggttgggagttcatgtttgtttgttaacattgatataacatcagacattgttggtcgatcatttgcatatt 36310878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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