View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14684_high_44 (Length: 283)

Name: NF14684_high_44
Description: NF14684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14684_high_44
NF14684_high_44
[»] chr4 (18 HSPs)
chr4 (1-282)||(6388045-6388326)
chr4 (53-266)||(10482038-10482251)
chr4 (53-267)||(10467900-10468113)
chr4 (38-265)||(6392663-6392893)
chr4 (53-248)||(10464123-10464321)
chr4 (164-248)||(11971000-11971084)
chr4 (164-281)||(6372413-6372530)
chr4 (190-262)||(837770-837842)
chr4 (150-266)||(8443454-8443570)
chr4 (38-266)||(10460467-10460695)
chr4 (38-266)||(10571276-10571504)
chr4 (164-226)||(11981723-11981785)
chr4 (166-266)||(53774810-53774910)
chr4 (53-226)||(10475061-10475237)
chr4 (205-266)||(829597-829658)
chr4 (164-220)||(832185-832241)
chr4 (45-123)||(829715-829793)
chr4 (202-266)||(8447654-8447718)
[»] chr1 (2 HSPs)
chr1 (55-267)||(50645484-50645696)
chr1 (190-268)||(4570921-4570999)
[»] chr3 (2 HSPs)
chr3 (38-266)||(25901279-25901507)
chr3 (38-266)||(25915297-25915525)
[»] chr2 (3 HSPs)
chr2 (164-266)||(25377042-25377144)
chr2 (164-266)||(554444-554546)
chr2 (194-248)||(20975556-20975610)
[»] chr7 (16 HSPs)
chr7 (162-266)||(22063608-22063712)
chr7 (162-266)||(22100459-22100563)
chr7 (164-266)||(22080836-22080938)
chr7 (164-267)||(22070079-22070182)
chr7 (164-266)||(660847-660949)
chr7 (164-244)||(9807792-9807872)
chr7 (164-267)||(20374502-20374605)
chr7 (164-266)||(20352063-20352165)
chr7 (190-267)||(1985954-1986031)
chr7 (191-246)||(19637237-19637292)
chr7 (164-242)||(13416935-13417013)
chr7 (193-266)||(14076675-14076748)
chr7 (193-266)||(14386703-14386776)
chr7 (196-265)||(29106814-29106883)
chr7 (205-265)||(24035760-24035820)
chr7 (196-264)||(29899374-29899442)
[»] scaffold0867 (1 HSPs)
scaffold0867 (162-266)||(4669-4773)
[»] chr8 (2 HSPs)
chr8 (164-215)||(27618459-27618510)
chr8 (170-226)||(42846465-42846521)
[»] chr6 (4 HSPs)
chr6 (166-266)||(20770620-20770720)
chr6 (190-267)||(6921349-6921426)
chr6 (178-243)||(6935241-6935306)
chr6 (198-243)||(19746717-19746762)
[»] chr5 (2 HSPs)
chr5 (165-248)||(18964848-18964931)
chr5 (198-243)||(23086784-23086829)


Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 6388045 - 6388326
Alignment:
Q  1 ctgtttcggatatattttattggaatgatagacttactactgttaagcaatgtgtgattctttcacttgatctatccagtgagaaatacactcaattttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6388045 ctgtttcggatatattttattggaatgatagacttactactgttaagcaatgtgtgattctttcacttgatctatcaagtgagaaatacactcaattttt 6388144  T
Q  101 gcttcctcgggattttgataaggttccacgttatcagccaaagattgttgttttgatgtgctatctttgtttttgtcatgattttgagcaaactcatttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||| ||||||||| |    
T  6388145 gcttcctcgggattttgataaggttccacgttatcagccaaagcttgttgttttgatgggctgtctttgtttttgtcatgattttgaggaaactcattct 6388244  T
Q  201 gttatatggcaaatgaaggattttggcgctcaagagtcttggattcaactattaaaaattagttatagcacttccttttcac 282  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  6388245 gttatatggcaaatgaaggattttggcgcccaagagtcttggattcaactattaaaaattagttatagcaatttcttttcac 6388326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 53 - 266
Target Start/End: Original strand, 10482038 - 10482251
Alignment:
Q  53 tgtgattctttcacttgatctatccagtgagaaatacactcaatttttgcttcctcgggattttgataaggttccacgttatcagccaaagattgttgtt 152  Q
    ||||||||||||||||||||| || | ||||| |||||||||||| ||||| ||||||| |||| |||||||  ||||| |||| |||||| |||  |||    
T  10482038 tgtgattctttcacttgatctctcaactgagacatacactcaattgttgctacctcggggttttaataaggtgtcacgtcatcaaccaaagcttgcggtt 10482137  T
Q  153 ttgatgtgctatctttgtttttgtcatgattttgagcaaactcattttgttatatggcaaatgaaggattttggcgctcaagagtcttggattcaactat 252  Q
    ||||||   | |||||||||| ||||||||| |||| ||||| ||||||||||||||||||||||||||||||| | |||   ||||||||||||| |||    
T  10482138 ttgatggattgtctttgttttggtcatgattatgaggaaacttattttgttatatggcaaatgaaggattttggagttcagtcgtcttggattcaattat 10482237  T
Q  253 taaaaattagttat 266  Q
    | ||||||| ||||    
T  10482238 ttaaaattacttat 10482251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 53 - 267
Target Start/End: Original strand, 10467900 - 10468113
Alignment:
Q  53 tgtgattctttcacttgatctatccagtgagaaatacactcaatttttgcttcctcgggattttgataaggttccacgttatcagccaaagattgttgtt 152  Q
    ||||||||||||||||||||| || | ||||| |||||||||||| ||||| ||||| | |||| |||||||  ||||| |||||||||||  ||  |||    
T  10467900 tgtgattctttcacttgatctctcaactgagacatacactcaattgttgctacctcgaggtttt-ataaggtgtcacgtcatcagccaaagcctgcggtt 10467998  T
Q  153 ttgatgtgctatctttgtttttgtcatgattttgagcaaactcattttgttatatggcaaatgaaggattttggcgctcaagagtcttggattcaactat 252  Q
    ||||||   | |||||||||  ||||||||| |||| ||||| ||||||||||||||||||||||||||||||| | |||   ||||||||||||| |||    
T  10467999 ttgatggattgtctttgtttcggtcatgattatgaggaaacttattttgttatatggcaaatgaaggattttggagttcagtcgtcttggattcaattat 10468098  T
Q  253 taaaaattagttata 267  Q
    | ||||||| |||||    
T  10468099 ttaaaattacttata 10468113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 38 - 265
Target Start/End: Original strand, 6392663 - 6392893
Alignment:
Q  38 tactgttaagcaatgtgtgattctttcacttgatctatccagtgagaaatacactcaatttttgcttcctcgg-gattttgataaggttccacgttatca 136  Q
    ||||||| |||||| ||||||||||||||| | ||| |||| ||||| ||||||| |||| ||||| ||||   | |||| ||||||| ||| |||||||    
T  6392663 tactgttgagcaatatgtgattctttcactcg-tctctccactgagacatacactaaattgttgctgcctcaatgtttttaataaggtgccatgttatca 6392761  T
Q  137 gccaaagattgttgttttgatgtgctatctttgtttttgtcatgattttgagcaaactcattttgttat---atggcaaatgaaggattttggcgctcaa 233  Q
     || ||  |||| |||||||||  || |||||||||||||| ||| | |||| |||| |||||||| ||   ||||||||||||||||||||| | |||     
T  6392762 accgaaacttgtggttttgatggactttctttgtttttgtcttgactatgaggaaacccattttgtcatcatatggcaaatgaaggattttggagttcac 6392861  T
Q  234 gagtcttggattcaactattaaaaattagtta 265  Q
    ||||||||||||||| |||| |||||||||||    
T  6392862 gagtcttggattcaattatttaaaattagtta 6392893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 53 - 248
Target Start/End: Original strand, 10464123 - 10464321
Alignment:
Q  53 tgtgattctttcacttgatctatccagtgagaaatacactcaatttttgcttcctcgggattttgataa---ggttccacgttatcagccaaagattgtt 149  Q
    ||||||||||||| |  |||| |||| |||||  ||||||||| | ||||| ||||||| ||||||| |   ||| |||  ||||||||||| | ||||     
T  10464123 tgtgattctttcaatcaatctttccactgagacgtacactcaactgttgctgcctcggggttttgatgatgaggtgccagattatcagccaaggcttgtg 10464222  T
Q  150 gttttgatgtgctatctttgtttttgtcatgattttgagcaaactcattttgttatatggcaaatgaaggattttggcgctcaagagtcttggattcaa 248  Q
    |||||||||   | ||||||||||||| |||||||  |  | || |||||||||||||||||||||||||||||||| | ||| |||||||||||||||    
T  10464223 gttttgatggattgtctttgtttttgttatgatttccaaaatacccattttgttatatggcaaatgaaggattttggggatcaggagtcttggattcaa 10464321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 11971084 - 11971000
Alignment:
Q  164 tctttgtttttgtcatgattttgagcaaactcattttgttatatggcaaatgaaggattttggcgctcaagagtcttggattcaa 248  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||| |   |||||||||||| ||||    
T  11971084 tctttgtttttctcatgattttgaacaaactcattttgttatatggcaaatgaaggaatttggagtggaagagtcttggactcaa 11971000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 164 - 281
Target Start/End: Original strand, 6372413 - 6372530
Alignment:
Q  164 tctttgtttttgtcatgattttgagcaaactcattttgttatatggcaaatgaaggattttggcgctcaagagtcttggattcaactattaaaaattagt 263  Q
    ||||||||||||| || | | |||| |||| |||||| ||||||||||||||||||||| ||| | ||||||||||| ||||||| |||  |||||||||    
T  6372413 tctttgtttttgtaataactatgaggaaacccattttattatatggcaaatgaaggattctggagttcaagagtcttagattcaattatataaaattagt 6372512  T
Q  264 tatagcacttccttttca 281  Q
    |||| || || |||||||    
T  6372513 tataacaatttcttttca 6372530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 190 - 262
Target Start/End: Original strand, 837770 - 837842
Alignment:
Q  190 aaactcattttgttatatggcaaatgaaggattttggcgctcaagagtcttggattcaactattaaaaattag 262  Q
    |||| |||||||||||||||||||||||| ||||||| | ||||||||||||||||||| |||| ||||||||    
T  837770 aaacccattttgttatatggcaaatgaagaattttggtgttcaagagtcttggattcaattatttaaaattag 837842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 150 - 266
Target Start/End: Complemental strand, 8443570 - 8443454
Alignment:
Q  150 gttttgatgtgctatctttgtttttgtcatgattttgagcaaactcattttgttatatggcaaatgaaggattttggcgctcaagagtcttggattcaac 249  Q
    |||||||||  || ||||||||||| | |||||||  ||  |||||||| |||||| ||||| |||||||||||||| | ||| |||||||||||||||     
T  8443570 gttttgatggactgtctttgtttttcttatgatttcaagagaactcattatgttatttggcagatgaaggattttggagttcacgagtcttggattcaat 8443471  T
Q  250 tattaaaaattagttat 266  Q
    |||| ||||||||||||    
T  8443470 tatttaaaattagttat 8443454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 266
Target Start/End: Original strand, 10460467 - 10460695
Alignment:
Q  38 tactgttaagcaatgtgtgattctttcacttgatctatccagtgagaaatacactcaatttttgcttcctcgggattttgataaggttccacgttatcag 137  Q
    ||||||| || ||| ||||||| ||||| | ||||| |||  ||||| |||||||||  | ||| | ||||||| ||| ||| |||| ||||||||||||    
T  10460467 tactgttgagaaatatgtgattgtttcattggatctctcctctgagacatacactcagctgttgttgcctcggggtttcgatgaggtgccacgttatcag 10460566  T
Q  138 ccaaagattgttgttttgatgtgctatctttgtttttgtcatgattttgagcaaactcattttgttatatggcaaatgaaggattttggcgctcaagagt 237  Q
    ||||   |||| |||||||||  || ||||||||| | | |||||||| ||  |||||||||||| ||||| || |||||| ||||||| | ||| ||||    
T  10460567 ccaacacttgtggttttgatggactgtctttgtttctcttatgattttaagggaactcattttgtgatatgacagatgaagaattttggagttcacgagt 10460666  T
Q  238 cttggattcaactattaaaaattagttat 266  Q
    | |||| |||| |||| |  |||||||||    
T  10460667 catggactcaattatttattattagttat 10460695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 266
Target Start/End: Complemental strand, 10571504 - 10571276
Alignment:
Q  38 tactgttaagcaatgtgtgattctttcacttgatctatccagtgagaaatacactcaatttttgcttcctcgggattttgataaggttccacgttatcag 137  Q
    ||||||| |||||| ||||||| ||||||||||||| || | ||||  ||||||| |||| ||||||||||||| ||||||  ||||  |  ||  |||     
T  10571504 tactgttgagcaatatgtgattgtttcacttgatctctcaactgagtcatacactgaattgttgcttcctcggggttttgacgaggtgtcttgtgttcaa 10571405  T
Q  138 ccaaagattgttgttttgatgtgctatctttgtttttgtcatgattttgagcaaactcattttgttatatggcaaatgaaggattttggcgctcaagagt 237  Q
    |||| | |||| ||||| ||   || |||||| ||||||||||||||  ||  || |||| ||||| ||||| ||||||  |||||||| | ||||||||    
T  10571404 ccaacgcttgtggttttaatcaactgtctttgcttttgtcatgatttcaagggaagtcatcttgttttatggaaaatgacagattttggagttcaagagt 10571305  T
Q  238 cttggattcaactattaaaaattagttat 266  Q
    ||||||||||  | || ||||||||||||    
T  10571304 cttggattcagttgtttaaaattagttat 10571276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 11981785 - 11981723
Alignment:
Q  164 tctttgtttttgtcatgattttgagcaaactcattttgttatatggcaaatgaaggattttgg 226  Q
    ||||||||||| |||||||||| | |||||||||||||||||||||||||||||||| |||||    
T  11981785 tctttgtttttctcatgattttcaacaaactcattttgttatatggcaaatgaaggaatttgg 11981723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 266
Target Start/End: Original strand, 53774810 - 53774910
Alignment:
Q  166 tttgtttttgtcatgattttgagcaaactcattttgttatatggcaaatgaaggattttggcgctcaagagtcttggattcaactattaaaaattagtta 265  Q
    ||||||||| | |||||||| |  ||||||||||||||||||||||||||||||| ||||| | | |||||||||||| |||| |  | |||||||||||    
T  53774810 tttgtttttcttatgattttaaagaaactcattttgttatatggcaaatgaaggaatttggagttgaagagtcttggactcaattccttaaaattagtta 53774909  T
Q  266 t 266  Q
    |    
T  53774910 t 53774910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 226
Target Start/End: Original strand, 10475061 - 10475237
Alignment:
Q  53 tgtgattctttcacttgatctatccagtgagaaatacactcaatttttgcttcctcgggattttgataa---ggttccacgttatcagccaaagattgtt 149  Q
    |||||||||||||||  |||| |||| |||||  | ||||| | | ||||| ||||||| ||||||| |   ||| |||  ||||||||||| | ||||     
T  10475061 tgtgattctttcactcaatctttccactgagacgttcactcgactgttgctgcctcggggttttgatgatgaggtgccaaattatcagccaaggcttgtg 10475160  T
Q  150 gttttgatgtgctatctttgtttttgtcatgattttgagcaaactcattttgttatatggcaaatgaaggattttgg 226  Q
    |||||||||   | ||||||||||||| |||||||  |  | || ||||||||||||||||||||||||||||||||    
T  10475161 gttttgatggattgtctttgtttttgttatgatttccaaaatacccattttgttatatggcaaatgaaggattttgg 10475237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 266
Target Start/End: Complemental strand, 829658 - 829597
Alignment:
Q  205 tatggcaaatgaaggattttggcgctcaagagtcttggattcaactattaaaaattagttat 266  Q
    |||| ||||||||||||||||| | ||||||||||||| ||||| |||| ||||||||||||    
T  829658 tatgccaaatgaaggattttggtgttcaagagtcttgggttcaattatttaaaattagttat 829597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 832185 - 832241
Alignment:
Q  164 tctttgtttttgtcatgattttgagcaaactcattttgttatatggcaaatgaagga 220  Q
    ||||||||||||||||||||||||| |||| ||| || | |||||||||||||||||    
T  832185 tctttgtttttgtcatgattttgagaaaacccatcttatgatatggcaaatgaagga 832241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 829793 - 829715
Alignment:
Q  45 aagcaatgtgtgattctttcacttgatctatccagtgagaaatacactcaatttttgcttcctcgggattttgataagg 123  Q
    ||||||| || |||||||||||||||||| |||| ||||| ||||||| |||| | ||| |||| || ||||| |||||    
T  829793 aagcaatatgcgattctttcacttgatctttccactgagacatacactaaattgtggctgcctcaggtttttgttaagg 829715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 266
Target Start/End: Complemental strand, 8447718 - 8447654
Alignment:
Q  202 ttatatggcaaatgaaggattttggcgctcaagagtcttggattcaactattaaaaattagttat 266  Q
    |||| ||||| ||||||||||| || | ||| ||||||||||||||| |||| ||||||| ||||    
T  8447718 ttatttggcagatgaaggatttcggagttcatgagtcttggattcaattatttaaaattaattat 8447654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 55 - 267
Target Start/End: Complemental strand, 50645696 - 50645484
Alignment:
Q  55 tgattctttcacttgatctatccagtgagaaatacactcaatttttgcttcctcgggattttgataaggttccacgttatcagccaaagattgttgtttt 154  Q
    ||||||||||||||||||| ||||  |||| |||||||||| | ||||| ||||||| |||| | ||| ||||||||||||||||||   ||   |||||    
T  50645696 tgattctttcacttgatctctccaccgagacatacactcaactgttgctgcctcggggttttcacaagcttccacgttatcagccaacacttaaggtttt 50645597  T
Q  155 gatgtgctatctttgtttttgtcatgattttgagcaaactcattttgttatatggcaaatgaaggattttggcgctcaagagtcttggattcaactatta 254  Q
     | |  | |||||||| ||| |||||||||||||  ||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||| ||||     
T  50645596 aagggacaatctttgtatttttcatgattttgagggaactcattttgttatgtggcaaatgaaggattttggagttcaagagtcttggattcaattattt 50645497  T
Q  255 aaaattagttata 267  Q
    |||||||||||||    
T  50645496 aaaattagttata 50645484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 268
Target Start/End: Original strand, 4570921 - 4570999
Alignment:
Q  190 aaactcattttgttatatggcaaatgaaggattttggcgctcaagagtcttggattcaactattaaaaattagttatag 268  Q
    ||||| ||||||||||||||||||||||| | ||||| | | |||| ||||||| |||| |  | ||||||||||||||    
T  4570921 aaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttatag 4570999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 38 - 266
Target Start/End: Complemental strand, 25901507 - 25901279
Alignment:
Q  38 tactgttaagcaatgtgtgattctttcacttgatctatccagtgagaaatacactcaatttttgcttcctcgggattttgataaggttccacgttatcag 137  Q
    ||||||| |||||| ||||||| |||| |||||||| |||| ||||  ||||||||| || ||||| ||||||| ||||||  |||| ||||||  ||||    
T  25901507 tactgttgagcaatatgtgattgtttcgcttgatctgtccactgagtcatacactcagttgttgctacctcggggttttgacgaggtgccacgtgttcag 25901408  T
Q  138 ccaaagattgttgttttgatgtgctatctttgtttttgtcatgattttgagcaaactcattttgttatatggcaaatgaaggattttggcgctcaagagt 237  Q
    ||||  ||||| |||||||||  ||  ||||||||| ||||||||||  ||  ||  ||||||||||||||| |||||||||||||| | | ||||||||    
T  25901407 ccaacaattgtggttttgatggactccctttgttttggtcatgatttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagt 25901308  T
Q  238 cttggattcaactattaaaaattagttat 266  Q
    ||||||||||| | |||||||||||||||    
T  25901307 cttggattcaattgttaaaaattagttat 25901279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 38 - 266
Target Start/End: Complemental strand, 25915525 - 25915297
Alignment:
Q  38 tactgttaagcaatgtgtgattctttcacttgatctatccagtgagaaatacactcaatttttgcttcctcgggattttgataaggttccacgttatcag 137  Q
    ||||||| |||||| ||||||| |||| |||||||| |||| ||||  ||||||||| || ||||| ||||||| ||||||  |||| ||||||  ||||    
T  25915525 tactgttgagcaatatgtgattgtttcgcttgatctgtccactgagtcatacactcagttgttgctgcctcggggttttgacgaggtgccacgtgttcag 25915426  T
Q  138 ccaaagattgttgttttgatgtgctatctttgtttttgtcatgattttgagcaaactcattttgttatatggcaaatgaaggattttggcgctcaagagt 237  Q
    ||||  ||||| |||||||||  ||  ||||||||| ||||||||||  ||  ||  ||||||||||||||| |||||||||||||| | | ||||||||    
T  25915425 ccaacaattgtggttttgatggactccctttgttttggtcatgatttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagt 25915326  T
Q  238 cttggattcaactattaaaaattagttat 266  Q
    ||||||||||| | |||||||||||||||    
T  25915325 cttggattcaattgttaaaaattagttat 25915297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 164 - 266
Target Start/End: Original strand, 25377042 - 25377144
Alignment:
Q  164 tctttgtttttgtcatgattttgagcaaactcattttgttatatggcaaatgaaggattttggcgctcaagagtcttggattcaactattaaaaattagt 263  Q
    ||||||||||||||||||||| ||| |||  |||||||||||||||   |||||||||||||| | ||||||||||||||||||| |||| |||||||||    
T  25377042 tctttgtttttgtcatgatttggaggaaaaccattttgttatatggatgatgaaggattttggagttcaagagtcttggattcaattatttaaaattagt 25377141  T
Q  264 tat 266  Q
    |||    
T  25377142 tat 25377144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 266
Target Start/End: Original strand, 554444 - 554546
Alignment:
Q  164 tctttgtttttgtcatgattttgagcaaactcattttgttatatggcaaatgaaggattttggcgctcaagagtcttggattcaactattaaaaattagt 263  Q
    ||||||||||| ||| |||||||||  ||| ||| || |||||||||||||||  || | ||| | | |||||||||||| |||| || | |||||||||    
T  554444 tctttgtttttctcacgattttgagggaacccatcttattatatggcaaatgatagaatatggagttaaagagtcttggactcaattacttaaaattagt 554543  T
Q  264 tat 266  Q
    |||    
T  554544 tat 554546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 20975556 - 20975610
Alignment:
Q  194 tcattttgttatatggcaaatgaaggattttggcgctcaagagtcttggattcaa 248  Q
    ||||||||||||||||||||||| ||| ||||| | | |||| ||||||||||||    
T  20975556 tcattttgttatatggcaaatgagggaatttggagttgaagattcttggattcaa 20975610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 162 - 266
Target Start/End: Original strand, 22063608 - 22063712
Alignment:
Q  162 tatctttgtttttgtcatgattttgagcaaactcattttgttatatggcaaatgaaggattttggcgctcaagagtcttggattcaactattaaaaatta 261  Q
    ||||||||||||| |||||||||  | |||||||||||||||||||||||||||||||| |||||   |||||||||||||| |||  |||| |||||||    
T  22063608 tatctttgtttttttcatgatttcaaacaaactcattttgttatatggcaaatgaaggaatttggatttcaagagtcttggactcagttattcaaaatta 22063707  T
Q  262 gttat 266  Q
    |||||    
T  22063708 gttat 22063712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 162 - 266
Target Start/End: Original strand, 22100459 - 22100563
Alignment:
Q  162 tatctttgtttttgtcatgattttgagcaaactcattttgttatatggcaaatgaaggattttggcgctcaagagtcttggattcaactattaaaaatta 261  Q
    ||||||||||||| |||||||||  |  ||||||||||| ||||||||||||||||| | ||||| | |||||||||||||| |||  |||| |||||||    
T  22100459 tatctttgtttttctcatgatttcaaaaaaactcattttattatatggcaaatgaagaaatttggagttcaagagtcttggactcagttattcaaaatta 22100558  T
Q  262 gttat 266  Q
    |||||    
T  22100559 gttat 22100563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 164 - 266
Target Start/End: Original strand, 22080836 - 22080938
Alignment:
Q  164 tctttgtttttgtcatgattttgagcaaactcattttgttatatggcaaatgaaggattttggcgctcaagagtcttggattcaactattaaaaattagt 263  Q
    ||||||||||| |||||||||  | |||||||||||| ||||||||||||||||| | ||||| | |||||||||||||| ||   |||| |||||||||    
T  22080836 tctttgtttttctcatgatttcaaacaaactcattttattatatggcaaatgaagcaatttggagttcaagagtcttggactcggttattcaaaattagt 22080935  T
Q  264 tat 266  Q
    |||    
T  22080936 tat 22080938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 164 - 267
Target Start/End: Original strand, 22070079 - 22070182
Alignment:
Q  164 tctttgtttttgtcatgattttgagcaaactcattttgttatatggcaaatgaaggattttggcgctcaagagtcttggattcaactattaaaaattagt 263  Q
    ||||||||||| |||||||||  | | |||||||||| ||||||||||||||||| | ||||| | |||||||||||||| ||   |||| |||||||||    
T  22070079 tctttgtttttctcatgatttcaaacgaactcattttattatatggcaaatgaagcaatttggagttcaagagtcttggactcggttattcaaaattagt 22070178  T
Q  264 tata 267  Q
    ||||    
T  22070179 tata 22070182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 266
Target Start/End: Complemental strand, 660949 - 660847
Alignment:
Q  164 tctttgtttttgtcatgattttgagcaaactcattttgttatatggcaaatgaaggattttggcgctcaagagtcttggattcaactattaaaaattagt 263  Q
    ||||||||||||||| |||||  | ||||||| ||||||||||||||| |||||||| ||| | | | |||||||||||| |||| |  | |||||||||    
T  660949 tctttgtttttgtcacgatttcaaacaaactcgttttgttatatggcagatgaaggaatttcgagttgaagagtcttggactcaattccttaaaattagt 660850  T
Q  264 tat 266  Q
    |||    
T  660849 tat 660847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 244
Target Start/End: Original strand, 9807792 - 9807872
Alignment:
Q  164 tctttgtttttgtcatgattttgagcaaactcattttgttatatggcaaatgaaggattttggcgctcaagagtcttggat 244  Q
    |||||||||||||||||||||  || ||||  |||| ||||||||||| |||||||| ||||| | | |||||||||||||    
T  9807792 tctttgtttttgtcatgatttgaagaaaaccgatttcgttatatggcagatgaaggaatttggagttgaagagtcttggat 9807872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 267
Target Start/End: Complemental strand, 20374605 - 20374502
Alignment:
Q  164 tctttgtttttgtcatgattttgagcaaactcattttgttatatggcaaatgaaggattttggcgctcaagagtcttggattcaactattaaaaattagt 263  Q
    |||||||||||  |||||||   | |||||||||||||| |||||| |||||||||| ||||| | |  ||| || ||||||||||| || |||||||||    
T  20374605 tctttgtttttcacatgattacaaacaaactcattttgtaatatgggaaatgaaggaatttggagttggagattcatggattcaactttttaaaattagt 20374506  T
Q  264 tata 267  Q
    ||||    
T  20374505 tata 20374502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 266
Target Start/End: Original strand, 20352063 - 20352165
Alignment:
Q  164 tctttgtttttgtcatgattttgagcaaactcattttgttatatggcaaatgaaggattttggcgctcaagagtcttggattcaactattaaaaattagt 263  Q
    |||||||||||  |||||||   | |||||||||||||| |||||| |||||||||| ||||| | | |||| || |||| |||||| || |||||||||    
T  20352063 tctttgtttttcacatgattacaaacaaactcattttgtaatatgggaaatgaaggaatttggagttgaagattcatggactcaactttttaaaattagt 20352162  T
Q  264 tat 266  Q
    |||    
T  20352163 tat 20352165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 267
Target Start/End: Complemental strand, 1986031 - 1985954
Alignment:
Q  190 aaactcattttgttatatggcaaatgaaggattttggcgctcaagagtcttggattcaactattaaaaattagttata 267  Q
    |||| ||||||||| | |||||||||||||| ||||||| | |||| ||||||| |||| | || |||||||||||||    
T  1986031 aaacccattttgttctttggcaaatgaaggaatttggcgttgaagaatcttggactcaattgtttaaaattagttata 1985954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 246
Target Start/End: Complemental strand, 19637292 - 19637237
Alignment:
Q  191 aactcattttgttatatggcaaatgaaggattttggcgctcaagagtcttggattc 246  Q
    |||| ||||| ||||||||||||||||||| ||||| | ||||||||| |||||||    
T  19637292 aactgattttattatatggcaaatgaaggaatttggagttcaagagtcgtggattc 19637237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 242
Target Start/End: Complemental strand, 13417013 - 13416935
Alignment:
Q  164 tctttgtttttgtcatgattttgagcaaactcattttgttatatggcaaatgaaggattttggcgctcaagagtcttgg 242  Q
    ||||||||||| | |||||||| || ||||  ||||| | ||||||||||||||||| ||||| | | |||||||||||    
T  13417013 tctttgtttttcttatgattttaagaaaacctattttatcatatggcaaatgaaggaatttggagttgaagagtcttgg 13416935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 266
Target Start/End: Original strand, 14076675 - 14076748
Alignment:
Q  193 ctcattttgttatatggcaaatgaaggattttggcgctcaagagtcttggattcaactattaaaaattagttat 266  Q
    ||||||| |||||||||||||||||||| ||||| | | |||| ||||||| |||| |  | ||||||||||||    
T  14076675 ctcatttcgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttat 14076748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 266
Target Start/End: Original strand, 14386703 - 14386776
Alignment:
Q  193 ctcattttgttatatggcaaatgaaggattttggcgctcaagagtcttggattcaactattaaaaattagttat 266  Q
    ||||||| |||||||||||||||||||| ||||| | | |||| ||||||| |||| |  | ||||||||||||    
T  14386703 ctcatttcgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttat 14386776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 265
Target Start/End: Original strand, 29106814 - 29106883
Alignment:
Q  196 attttgttatatggcaaatgaaggattttggcgctcaagagtcttggattcaactattaaaaattagtta 265  Q
    |||||||| ||||||| |||||| | ||||| | | |||||||||||| |||||| || |||||||||||    
T  29106814 attttgttgtatggcagatgaagaaatttggggttgaagagtcttggactcaactttttaaaattagtta 29106883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 265
Target Start/End: Original strand, 24035760 - 24035820
Alignment:
Q  205 tatggcaaatgaaggattttggcgctcaagagtcttggattcaactattaaaaattagtta 265  Q
    |||||||||||||||| |  |||| |||||||||||||| |||| |||| || ||||||||    
T  24035760 tatggcaaatgaaggagtacggcgttcaagagtcttggactcaattatttaagattagtta 24035820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 264
Target Start/End: Original strand, 29899374 - 29899442
Alignment:
Q  196 attttgttatatggcaaatgaaggattttggcgctcaagagtcttggattcaactattaaaaattagtt 264  Q
    |||||||||||||||| |||||| | ||||| | | ||||||| |||| |||| | |||||||||||||    
T  29899374 attttgttatatggcagatgaagaaatttggggttgaagagtcctggactcaatttttaaaaattagtt 29899442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0867 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 162 - 266
Target Start/End: Complemental strand, 4773 - 4669
Alignment:
Q  162 tatctttgtttttgtcatgattttgagcaaactcattttgttatatggcaaatgaaggattttggcgctcaagagtcttggattcaactattaaaaatta 261  Q
    ||||||||||||| |||||||||  |  ||||||||||| ||||||||||||||||| | ||||| | |||||||||||||| |||  |||| |||||||    
T  4773 tatctttgtttttctcatgatttcaaaaaaactcattttattatatggcaaatgaagaaatttggagttcaagagtcttggactcagttattcaaaatta 4674  T
Q  262 gttat 266  Q
    |||||    
T  4673 gttat 4669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 27618459 - 27618510
Alignment:
Q  164 tctttgtttttgtcatgattttgagcaaactcattttgttatatggcaaatg 215  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  27618459 tctttgtttttgtcatgattttaagcaaactcattttgttatatggaaaatg 27618510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 42846521 - 42846465
Alignment:
Q  170 tttttgtcatgattttgagcaaactcattttgttatatggcaaatgaaggattttgg 226  Q
    ||||| ||||||||||||| |||| ||||||||||| ||||||||||||||||||||    
T  42846521 tttttttcatgattttgaggaaacccattttgttatttggcaaatgaaggattttgg 42846465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 266
Target Start/End: Original strand, 20770620 - 20770720
Alignment:
Q  166 tttgtttttgtcatgattttgagcaaactcattttgttatatggcaaatgaaggattttggcgctcaagagtcttggattcaactattaaaaattagtta 265  Q
    ||||||||| ||||||| || |  ||||| ||||||||||||||||||||||||| |||||   | ||||||| ||||||||| |  | |||||||||||    
T  20770620 tttgtttttctcatgatgttaaaaaaacttattttgttatatggcaaatgaaggaatttggaattgaagagtcatggattcaattccttaaaattagtta 20770719  T
Q  266 t 266  Q
    |    
T  20770720 t 20770720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 267
Target Start/End: Complemental strand, 6921426 - 6921349
Alignment:
Q  190 aaactcattttgttatatggcaaatgaaggattttggcgctcaagagtcttggattcaactattaaaaattagttata 267  Q
    |||| ||||||||||| |||||||||||||| ||||| | | |||| ||||||| |||| |  | |||||||||||||    
T  6921426 aaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttata 6921349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 6935306 - 6935241
Alignment:
Q  178 atgattttgagcaaactcattttgttatatggcaaatgaaggattttggcgctcaagagtcttgga 243  Q
    |||||||| || |||| |||| |||||| |||||||||||||| ||||| | |||||| |||||||    
T  6935306 atgattttaagaaaacccattatgttatttggcaaatgaaggaatttggagttcaagaatcttgga 6935241  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 19746762 - 19746717
Alignment:
Q  198 tttgttatatggcaaatgaaggattttggcgctcaagagtcttgga 243  Q
    ||||||||||||||||||||| | ||||| | ||||||||||||||    
T  19746762 tttgttatatggcaaatgaagaagtttggagttcaagagtcttgga 19746717  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 248
Target Start/End: Complemental strand, 18964931 - 18964848
Alignment:
Q  165 ctttgtttttgtcatgattttgagcaaactcattttgttatatggcaaatgaaggattttggcgctcaagagtcttggattcaa 248  Q
    |||||||||  ||||||| ||||  ||||||||||  ||||||||||||||||||| ||||| | | |||| ||||||| ||||    
T  18964931 ctttgttttactcatgatcttgaaaaaactcatttcattatatggcaaatgaaggaatttggagttgaagactcttggactcaa 18964848  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 23086784 - 23086829
Alignment:
Q  198 tttgttatatggcaaatgaaggattttggcgctcaagagtcttgga 243  Q
    |||||||||||||| |||||||| ||||| | ||||||||||||||    
T  23086784 tttgttatatggcagatgaaggagtttggagttcaagagtcttgga 23086829  T

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