View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14684_high_46 (Length: 273)
Name: NF14684_high_46
Description: NF14684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14684_high_46 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 2377301 - 2377573
Alignment:
| Q |
1 |
cttagtgagatacgtctttgttattgttgttgtgtccccctcagcttaccaactgagctacctggatggaaagatgagatttgggttcaaataatgcagt |
100 |
Q |
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|||||||||||| | ||| ||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
2377301 |
cttagtgagataaggcttggttattgttgtagtgtccccctcaacttaccaactgagctacctggttggaaagatgagatttgtgttcaaataatgcagt |
2377400 |
T |
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| Q |
101 |
gtcattgtttaaacttaacattagatgtacacataggtctcattgttcagttttctgcataccgatggacaaagcttctgttcttggagaagctataagg |
200 |
Q |
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|||| | ||||||||||||||||||| |||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2377401 |
gtcaatttttaaacttaacattagatatacatataggtctcatttttcagttttctgcatacagatggacaaagcttctgttcttggagaagctataagg |
2377500 |
T |
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| Q |
201 |
tacttaaagcaaatggaagagaaagtgagtgttcttgaggaggaacagaaaaggaagaaaactgtggaatctg |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2377501 |
tacttaaagcaaatggaagagaaagtgagtgttcttgaggaggaacagaaaaggaagaaaactgtggaatctg |
2377573 |
T |
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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 270
Target Start/End: Complemental strand, 36767057 - 36766951
Alignment:
| Q |
164 |
gatggacaaagcttctgttcttggagaagctataaggtacttaaagcaaatggaagagaaagtgagtgttcttgaggaggaacagaaaaggaagaaaact |
263 |
Q |
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||||||||||| | ||||||||||||| ||||| | |||||| ||| || || ||||||| |||| |||||||||||||||||||| | |||||||| |
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| T |
36767057 |
gatggacaaagttactgttcttggagatgctatcaagtacttgaagaaattgcaagagaaggtgaaggttcttgaggaggaacagaacatgaagaaaaac |
36766958 |
T |
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| Q |
264 |
gtggaat |
270 |
Q |
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||||||| |
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| T |
36766957 |
gtggaat |
36766951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 54980314 - 54980362
Alignment:
| Q |
165 |
atggacaaagcttctgttcttggagaagctataaggtacttaaagcaaa |
213 |
Q |
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||||| |||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
54980314 |
atggataaagcttctgttcttggagaagatataaggtacttgaagcaaa |
54980362 |
T |
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