View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14684_high_5 (Length: 566)
Name: NF14684_high_5
Description: NF14684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14684_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 20 - 271
Target Start/End: Complemental strand, 31443475 - 31443224
Alignment:
| Q |
20 |
gtggtggagtgaaccgtacagtgcaaggaagtgttttcttaagggtggagtttgtcacacgcgttaagtataagattctgtttgtatatactaaacgaca |
119 |
Q |
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| T |
31443475 |
gtggtggagtgaaccgtacagtgcaaggaagtgttttcttaagggtggagtttgtcacacgcgttaagtataagattctgtttgtatatactaaacgaca |
31443376 |
T |
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| Q |
120 |
ccgtttgtctggaggggcaaatgtggaagttaatgttagttcagggcagaaggtgaatcctaaagggatcaggcttggtaatgatccagtacgggtcggg |
219 |
Q |
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| T |
31443375 |
ccgtttgtctggaggggcaaatgtggaagttaatgttagttcagggcagaaggtgaatcctaaagggatcaggcttggtaatgatccagttcgggtcggg |
31443276 |
T |
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| Q |
220 |
tctgaagctgcaccagtttgtggattatgggttgctctttctggaacttttg |
271 |
Q |
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| T |
31443275 |
tctgaagctgcaccggttcgtggattatgggttgctctttctggaacttttg |
31443224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 378 - 553
Target Start/End: Complemental strand, 31443117 - 31442942
Alignment:
| Q |
378 |
ccgattgattataatcaagtgaaaaaatgagctccggttaaagacagatcataagaagaatctgagattgaattttggttggaacaatcttgaaccaaat |
477 |
Q |
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| T |
31443117 |
ccgattgattataatcaagtgaaaaaatgagctccggttaaagacagatcataagaagaatctgagattgaattttggttggaacaatcttgaaccaaac |
31443018 |
T |
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| Q |
478 |
ataaagccgatctccggattaccacgattccttcttttacaaaccggtgggttaagaaacaaaaattcaatatatt |
553 |
Q |
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| T |
31443017 |
ataaagccgatctccggattaccacgattccttcttttacaaaccggtgggttaagaaacaaaaattcaatatatt |
31442942 |
T |
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