View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14684_high_50 (Length: 255)
Name: NF14684_high_50
Description: NF14684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14684_high_50 |
 | |
|
| [»] scaffold0038 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 5 - 126
Target Start/End: Complemental strand, 28180974 - 28180851
Alignment:
| Q |
5 |
gaggagacggatgattgaagcatagccatgagaa-----aataaaaaggaagtaagaagagtatgagaagtaagaatgtgaaactgggtgtatatatagg |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| | || ||||||||||||| |
|
|
| T |
28180974 |
gaggagacggatgattgaagcatagccatgagaatagagaataaaaaggaagtaagaatagtatgagaagtaagaatgtgga--tgagtgtatatatagg |
28180877 |
T |
|
| Q |
100 |
gttcttaaaataaatcaagaagtgaaa |
126 |
Q |
| |
|
||| | ||||||||||||||||||||| |
|
|
| T |
28180876 |
gtt-tcaaaataaatcaagaagtgaaa |
28180851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 5 - 126
Target Start/End: Complemental strand, 28185226 - 28185103
Alignment:
| Q |
5 |
gaggagacggatgattgaagcatagccatgagaa-----aataaaaaggaagtaagaagagtatgagaagtaagaatgtgaaactgggtgtatatatagg |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| | || ||||||||||||| |
|
|
| T |
28185226 |
gaggagacggatgattgaagcatagccatgagaatagagaataaaaaggaagtaagaatagtatgagaagtaagaatgtgga--tgagtgtatatatagg |
28185129 |
T |
|
| Q |
100 |
gttcttaaaataaatcaagaagtgaaa |
126 |
Q |
| |
|
||| | ||||||||||||||||||||| |
|
|
| T |
28185128 |
gtt-tcaaaataaatcaagaagtgaaa |
28185103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 28180851 - 28180768
Alignment:
| Q |
152 |
acttaagaggatccattgaccaaagaccatagtgagtgaaacttcctttctatttccattctaccaaattcaaaagagaagaca |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||||||| | |||||| |||||||||| ||||||| |||||| |
|
|
| T |
28180851 |
acttaagaggatccattgaccaaagaccatcgtgagttaaacttccttcccatttcctatctaccaaatacaaaagaaaagaca |
28180768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 28185103 - 28185020
Alignment:
| Q |
152 |
acttaagaggatccattgaccaaagaccatagtgagtgaaacttcctttctatttccattctaccaaattcaaaagagaagaca |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||||||| | |||||| |||||||||| ||||||| |||||| |
|
|
| T |
28185103 |
acttaagaggatccattgaccaaagaccatcgtgagttaaacttccttcccatttcctatctaccaaatacaaaagaaaagaca |
28185020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 239
Target Start/End: Complemental strand, 28149444 - 28149341
Alignment:
| Q |
137 |
tggcaccacggtttcacttaagaggatccattgaccaaagaccatagtgagtgaaacttcctttctatttcc-attctaccaaattcaaaagagaagaca |
235 |
Q |
| |
|
||||| ||||||| ||||| |||||||||| |||||||||||| | |||||| |||||||||| | |||||| || |||||||| ||||||| |||||| |
|
|
| T |
28149444 |
tggcaacacggttgcactttagaggatccactgaccaaagaccgttgtgagttaaacttccttcccatttcctatcttaccaaatacaaaagaaaagaca |
28149345 |
T |
|
| Q |
236 |
aatc |
239 |
Q |
| |
|
|||| |
|
|
| T |
28149344 |
aatc |
28149341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 196
Target Start/End: Complemental strand, 28226709 - 28226642
Alignment:
| Q |
131 |
taaaaatggcaccacggtttcacttaagag--gatccattgaccaaagaccatagtgagtgaaacttc |
196 |
Q |
| |
|
|||||| |||| | ||||| |||||||||| ||||||||||||||||||||| | |||||||||||| |
|
|
| T |
28226709 |
taaaaaaggcaactcggttgcacttaagagaggatccattgaccaaagaccattgggagtgaaacttc |
28226642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 196
Target Start/End: Complemental strand, 27207 - 27140
Alignment:
| Q |
131 |
taaaaatggcaccacggtttcacttaagag--gatccattgaccaaagaccatagtgagtgaaacttc |
196 |
Q |
| |
|
|||||| |||| | ||||| |||||||||| ||||||||||||||||||||| | |||||||||||| |
|
|
| T |
27207 |
taaaaaaggcaactcggttgcacttaagagaggatccattgaccaaagaccattgggagtgaaacttc |
27140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University