View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14684_high_52 (Length: 248)
Name: NF14684_high_52
Description: NF14684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14684_high_52 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 19400229 - 19400023
Alignment:
| Q |
19 |
aagcatgctttttaaatagcagagatatgggattgattggcaagcatttcataaaccaatttttatggaactaatttgttatctcacatttataaacaaa |
118 |
Q |
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| T |
19400229 |
aagcatgctttttaaatagcagagatatgggattgattggcaagcatttcataaaccaatttttatggaactaatttgttatctcgcatttataaacaag |
19400130 |
T |
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| Q |
119 |
acttgtaagaatttaaaagtgattagtgctggactaagaaattttttaacaaggattatgaaaaatctcatatatactacaatatattaattacgagaac |
218 |
Q |
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| T |
19400129 |
acttgtaagaatttaaaagagattagtgctggactaagaaattttttaacaacgattatgaaaaatctcatatatagtacaatatattaattacaagaac |
19400030 |
T |
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| Q |
219 |
taccatg |
225 |
Q |
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||||||| |
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| T |
19400029 |
taccatg |
19400023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 21 - 225
Target Start/End: Original strand, 19536454 - 19536648
Alignment:
| Q |
21 |
gcatgctttttaaatagcagagatatgggattgattggcaagcatttcataaaccaatttttatggaactaatttgttatctcacatttataaacaaaac |
120 |
Q |
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| T |
19536454 |
gcatgctttttaaatagtagagat--gggattgattggaaagcttttcagaaaccaatttttatggaactaatttgttatctgccatttatagacaaaac |
19536551 |
T |
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| Q |
121 |
ttgtaagaatttaaaagtgattagtgctggactaagaaattttttaacaaggattatgaaaaatctcatatatactacaatatattaattacgagaacta |
220 |
Q |
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| T |
19536552 |
ttgttag-----aaaagtgattggtgatggattaagaaattgttcaacaaggattatgaaaaatctcatatagactaaaatatatta---acgagaacta |
19536643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 82 - 208
Target Start/End: Complemental strand, 19349395 - 19349267
Alignment:
| Q |
82 |
tatggaactaatttgttatctcacatttataaacaaaacttgtaagaatttaaaagtgattagtgctggactaagaaatttt--ttaacaaggattatga |
179 |
Q |
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|||| |||||||||||| ||| ||||||||||||||||||| | ||||||||||||||| ||| ||||||||||||||| | ||| ||| ||||| |
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| T |
19349395 |
tatgcaactaatttgttgtcttccatttataaacaaaacttgctataatttaaaagtgattggtgacggactaagaaattttcacttacatggactatga |
19349296 |
T |
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| Q |
180 |
aaaatctcatatatactacaatatattaa |
208 |
Q |
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| T |
19349295 |
aaaatttgatatagactaaaatatattaa |
19349267 |
T |
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