View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14684_high_56 (Length: 235)
Name: NF14684_high_56
Description: NF14684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14684_high_56 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 32553852 - 32554055
Alignment:
| Q |
17 |
aatatcaacaacaataattccaacaatagcaataatctatcagttatctttgattcacaagaagaaattgacaatgacatttctgcctcaatagatttct |
116 |
Q |
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| T |
32553852 |
aatatcaacaacaataattccaacaatagcaataatctatcagttatctttgattcacaagaagaaattgacaatgacatttctgcctcaatagatttct |
32553951 |
T |
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| Q |
117 |
cactatcaccatctttcaatgttccttcattccttccagtcacatcatcacagcaagtagaacaatttgatttctcttctgtgcagcctcatcatgttca |
216 |
Q |
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| T |
32553952 |
cactatcaccatctttcaatgttccttcattccttccagtcacatcatcacagcaagtagagcaatttgatttctcttctgtacagcctcatcatgttca |
32554051 |
T |
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| Q |
217 |
actt |
220 |
Q |
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|||| |
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| T |
32554052 |
actt |
32554055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 16921253 - 16921324
Alignment:
| Q |
61 |
tatctttgattcacaagaagaaattgacaatgacatttctgcctcaatagatttctcactatcaccatcttt |
132 |
Q |
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||||||||||||||||||||| |||||||||||||||| || || ||||||||| || ||||| |||||| |
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| T |
16921253 |
tatctttgattcacaagaagatcttgacaatgacatttcagcttctatagatttcacatcatcacaatcttt |
16921324 |
T |
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