View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14684_high_61 (Length: 215)
Name: NF14684_high_61
Description: NF14684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14684_high_61 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 52557587 - 52557402
Alignment:
| Q |
16 |
aggggcatttgtaggagatatacaa-ccttcagttcacccacagtcacagacacagagaatacataaatatatcatttaatttgtgttagtttgtttgga |
114 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52557587 |
aggggcatttgtaggagatatacaaaccttcagttcacccacagtcacagacacaaagaatacataaatatatcatttaatttgtgttagtttgtttggt |
52557488 |
T |
|
| Q |
115 |
gaaaaagaagataagaaagtaagaaacctggtggttccatcaaataaggaaggtggaggtgaagtggaagtaaggggtggtggaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52557487 |
gaaaaagaagataagaaagtaagaaacctggtagttccatcaaataaggaaggtggaggtgaagtggaagtaaggggtggtggaag |
52557402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University