View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14684_high_7 (Length: 521)
Name: NF14684_high_7
Description: NF14684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14684_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 502
Target Start/End: Complemental strand, 32187455 - 32186966
Alignment:
| Q |
1 |
acagaaatgaaacaggcttctccactcttaagtcttattatgttcttttttcaccaagcaaaaacaaatccctcaaataacaaccaaaccagtattgtca |
100 |
Q |
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||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32187455 |
acagaaatgaaccaggctcctccactcttaattcttattatgttcttttttcaccaagcaaaaacaaatccctcaaataacaaccaaaccagtattgtca |
32187356 |
T |
|
| Q |
101 |
attttggatcgcgtaaaatagcaatttgtgcaagctatgctacactaaatgctacgagaaatgctatagcaacactacagccacaatatgacaacatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32187355 |
attttggatcgcgtaaaatagcaatttgtgcaagctatgctacactaaatgcta------------tagcaacactacagccacaatatgacaacatttt |
32187268 |
T |
|
| Q |
201 |
gcaccaaatattgtatcaccgaacaatagcagtgacattataccaccactttagcttctatttcgaagacactcatacaaccctacaaatgtgatttcat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
32187267 |
gcaccaaatattgtatcaccgaacaatagcagtgacattataccaccactttagcttctatttcgaagacactcatacaacccgacaaatgtgatttcgt |
32187168 |
T |
|
| Q |
301 |
tcaattaattcannnnnnngtccttcatatttttatcagtgtcgattgtcagtgtcgtgcttcatagaagcaaaacactcctcagctaacaatttctact |
400 |
Q |
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||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
32187167 |
tcaattaattcttttttttcttcttcatatttttatcagtgtcgattgtcagtgtcgtgcttcatagaagcaaaacactcctcagctcacaatttttact |
32187068 |
T |
|
| Q |
401 |
aatttcaattaactaagataaattcttataacatattcacattcaacaaatccatcaataacagtaacgcaataactaaataaactcgttcaactaccct |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32187067 |
aatttcaattaactaagataaattcttataacatattcacattcaacaaatccatcaataacagtaacacaataactaaataaactcgttcaactaccct |
32186968 |
T |
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Back To:
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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 95 - 149
Target Start/End: Original strand, 13216757 - 13216811
Alignment:
| Q |
95 |
ttgtcaattttggatcgcgtaaaatagcaatttgtgcaagctatgctacactaaa |
149 |
Q |
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||||||||| |||||||| ||||||||||||||||||| | |||||||||||| |
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| T |
13216757 |
ttgtcaattgcggatcgcgaaaaatagcaatttgtgcaaattctgctacactaaa |
13216811 |
T |
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