View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14684_high_8 (Length: 520)
Name: NF14684_high_8
Description: NF14684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14684_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 17 - 503
Target Start/End: Original strand, 18234282 - 18234768
Alignment:
| Q |
17 |
gaaagtggcgagtgtgttacatcctccggtaatcagggctgacatgagagaagcattgctgctaaagccaatagtcttgaacaaaacaggagcatagaat |
116 |
Q |
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||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
18234282 |
gaaagtggcaagtgcgttacatcctccggtaatcagggctgacatgagagaagcgttgctgctaaacccaatagtcttgaacaaaacaggagcatagaat |
18234381 |
T |
|
| Q |
117 |
gtaatcacattcatgccggtgagttgctgaaagaacggaatggctattgccatcgtgagatgaggtctatacggtctcgtcaacaaagaggcccaaggat |
216 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18234382 |
gtaatcacattcatgccggtgagttgctgaaagaacggaatggctattgccattgtgagatgaggtctatacggtctcgtcaacaaagaggcccaaggat |
18234481 |
T |
|
| Q |
217 |
gttccacagttttggaaatatcactagctgcaaccaaatcttgaaactcctcgtctacatcggttgttccacggatacttatcaattcttttttggcttt |
316 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18234482 |
gttccacagtttttgaaatatcactagctgcaaccaaatcttgaaactcctcgtccacatcggttgttccacggatacttatcaattcttttttggcttt |
18234581 |
T |
|
| Q |
317 |
atcattttgaccgcgctcgatcaaagaacttggcgtgtcgggaagaaagattgcacctatgataatcattattgcagggacggcagccaaacccaaactg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
18234582 |
atcattttgaccgcgctcgatcaaagaacttggcgtgtcgggaagaaagattgcacctgtgataatcattattgcagggacggcagccaaacccaaactg |
18234681 |
T |
|
| Q |
417 |
taacgccatccttcaccgtttttcattttagaaaacacatagttgagaatattggccacaaagatgcctattgtgattgccaattgg |
503 |
Q |
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| T |
18234682 |
taacgccatccttcaccgtttttcattttagaaaacacatagttgagaatattggccacaaagatgcctattgtgattgccaattgg |
18234768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 20 - 502
Target Start/End: Complemental strand, 42551924 - 42551442
Alignment:
| Q |
20 |
agtggcgagtgtgttacatcctccggtaatcagggctgacatgagagaagcattgctgctaaagccaatagtcttgaacaaaacaggagcatagaatgta |
119 |
Q |
| |
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||||||||||| ||||| ||||| |||| | |||||||| |||||||||| || | ||||||||||||||||| ||||||||||| ||||| |||||| |
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| T |
42551924 |
agtggcgagtgcattacaacctccaataattaaggctgacacgagagaagcagtgttactaaagccaatagtcttaaacaaaacaggggcataaaatgta |
42551825 |
T |
|
| Q |
120 |
atcacattcatgccggtgagttgctgaaagaacggaatggctattgccatcgtgagatgaggtctatacggtctcgtcaacaaagaggcccaaggatgtt |
219 |
Q |
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|||||||||||||| ||||||||||| ||||| ||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||| ||||||| |||| |
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| T |
42551824 |
atcacattcatgccagtgagttgctggaagaagggaatggctattgccattgtgaggtgaggtctatattgtctcttcaacaaagagacccaagggtgtt |
42551725 |
T |
|
| Q |
220 |
ccacagttttggaaatatcactagctgcaaccaaatcttgaaactcctcgtctacatcggttgttccacggatacttatcaattcttttttggctttatc |
319 |
Q |
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||||||||| |||| |||||||||| |||||||||||||||||||||| || || || || |||||||| ||| | |||||||||| ||||||||| || |
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| T |
42551724 |
tcacagtttttgaaacatcactagctacaaccaaatcttgaaactcctcatcaacgtcagtagttccacgcatattaatcaattcttgtttggctttgtc |
42551625 |
T |
|
| Q |
320 |
attttgaccgcgctcgatcaaagaacttggcgtgtcgggaagaaagattgcacctatgataatcattattgcagggacggcagccaaacccaaactgtaa |
419 |
Q |
| |
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||||||||| ||||| ||||||||||| || | ||||||||| || |||||||||| | ||| ||||||| |||||| | ||| |||| ||||||||| |
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| T |
42551624 |
attttgaccacgctcaatcaaagaactcggtgagtcgggaaggaacattgcacctaaggtaaacattattccagggatagaagcaaaactcaaactgtag |
42551525 |
T |
|
| Q |
420 |
cgccatccttcaccgtttttcattttagaaaacacatagttgagaatattggccacaaagatgcctattgtgattgccaattg |
502 |
Q |
| |
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|||||||| || ||||| |||||||| | ||||| | ||||| ||||| ||||||||||||||||| |||||||||||||| |
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| T |
42551524 |
cgccatccctccccgttcttcattttcgcaaacatgaaattgaggatattagccacaaagatgcctatagtgattgccaattg |
42551442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 42 - 503
Target Start/End: Original strand, 1239831 - 1240292
Alignment:
| Q |
42 |
ccggtaatcagggctgacatgagagaagcattgctgctaaagccaatagtcttgaacaaaacaggagcatagaatgtaatcacattcatgccggtgagtt |
141 |
Q |
| |
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||||| |||| ||| |||||||| |||||||| | ||| || ||||| || |||||||| |||||||| ||||| || ||||||||||| ||||||| |
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| T |
1239831 |
ccggttatcatggcagacatgagggaagcattagcaccaaaacctatagttttaaacaaaactggagcataaaatgtgatgacattcatgccagtgagtt |
1239930 |
T |
|
| Q |
142 |
gctgaaagaacggaatggctattgccatcgtgagatgaggtctatacggtctcgtcaacaaagaggcccaaggatgttccacagttttggaaatatcact |
241 |
Q |
| |
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|||| || || ||||| ||||| ||||| || || ||||| |||||| | |||||||||||| | |||||||| | || | | ||| || | ||| |
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| T |
1239931 |
gctggaataatggaatagctatggccatggtaagttgaggcctatactgcctcgtcaacaaacaagcccaagggtatttgatggctttagaggcttgact |
1240030 |
T |
|
| Q |
242 |
agctgcaaccaaatcttgaaactcctcgtctacatcggttgttccacggatacttatcaattcttttttggctttatcattttgaccgcgctcgatcaaa |
341 |
Q |
| |
|
||||||| ||||| | |||||| || || ||||| | ||| || || || | ||||| || ||||| ||||| |||| |||||| | || ||||| |
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| T |
1240031 |
tgctgcaagtaaatcgttaaactcatcatcaacatctgatgtcccccgaatcttaatcaactcctttttagctttgtcatcttgacctctttcaatcaat |
1240130 |
T |
|
| Q |
342 |
gaacttggcgtgtcgggaagaaagattgcacctatgataatcattattgcagggacggcagccaaacccaaactgtaacgccatccttcaccgtttttca |
441 |
Q |
| |
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|||||||||| |||||||||||||||||||| || || |||||||| || || || |||| || ||||||||||| ||||||||||| ||||| |||| |
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| T |
1240131 |
gaacttggcgaatcgggaagaaagattgcaccgataattatcattatcgcgggaactacagcaaatcccaaactgtaccgccatccttccccgttcttca |
1240230 |
T |
|
| Q |
442 |
ttttagaaaacacatagttgagaatattggccacaaagatgcctattgtgattgccaattgg |
503 |
Q |
| |
|
| || | ||| | ||| ||||| || ||||||||||| |||||||| || |||| ||||||| |
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|
| T |
1240231 |
tgtttgcaaaaaaataattgaggatgttggccacaaaaatgcctatagttattgacaattgg |
1240292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 39 - 503
Target Start/End: Original strand, 42518150 - 42518614
Alignment:
| Q |
39 |
cctccggtaatcagggctgacatgagagaagcattgctgctaaagccaatagtcttgaacaaaacaggagcatagaatgtaatcacattcatgccggtga |
138 |
Q |
| |
|
|||||||| |||| ||||||||| || |||||||| | ||| || ||||| || |||||||| |||||||| ||||| || ||||||||||| |||| |
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| T |
42518150 |
cctccggtgatcatggctgacataagggaagcattagcaccaaatccgatagttttaaacaaaaccggagcataaaatgtgatgacattcatgccagtga |
42518249 |
T |
|
| Q |
139 |
gttgctgaaagaacggaatggctattgccatcgtgagatgaggtctatacggtctcgtcaacaaagaggcccaaggatgttccacagttttggaaatatc |
238 |
Q |
| |
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||||||| ||||| ||||| ||| | ||||| || || ||||| |||||| | |||||||||||| | |||||| |||| | | ||| || | |
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| T |
42518250 |
gttgctggaagaatggaatagctgtggccatggtaagctgaggcctatactgcctcgtcaacaaaatagaccaagggtgtttgatggctttagaggcttg |
42518349 |
T |
|
| Q |
239 |
actagctgcaaccaaatcttgaaactcctcgtctacatcggttgttccacggatacttatcaattcttttttggctttatcattttgaccgcgctcgatc |
338 |
Q |
| |
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||| ||||||| ||||| | |||||| || || ||||| | ||||| || || | ||||| || ||||| ||||| |||| | |||| | || ||| |
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|
| T |
42518350 |
acttgctgcaagtaaatcgttaaactcatcatcaacatctgaagttccccgaatcttaatcaactcctttttagctttgtcatctagacctctttcaatc |
42518449 |
T |
|
| Q |
339 |
aaagaacttggcgtgtcgggaagaaagattgcacctatgataatcattattgcagggacggcagccaaacccaaactgtaacgccatccttcaccgtttt |
438 |
Q |
| |
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|| |||||||||| |||||||||||||||||||| || || |||||||| || || || |||| | ||||||||||| ||||||||||| ||||| | |
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| T |
42518450 |
aatgaacttggcgaatcgggaagaaagattgcaccaataatgatcattatcgcgggaactccagcacatcccaaactgtatcgccatccttccccgttct |
42518549 |
T |
|
| Q |
439 |
tcattttagaaaacacatagttgagaatattggccacaaagatgcctattgtgattgccaattgg |
503 |
Q |
| |
|
|||| || | ||| | ||| ||||| || ||||||||||| |||||||| || |||||||||||| |
|
|
| T |
42518550 |
tcatctttgcaaaaaaataattgaggatgttggccacaaaaatgcctatagttattgccaattgg |
42518614 |
T |
|
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