View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14684_low_1 (Length: 699)

Name: NF14684_low_1
Description: NF14684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14684_low_1
NF14684_low_1
[»] chr8 (8 HSPs)
chr8 (15-628)||(2507366-2507979)
chr8 (17-235)||(2514458-2514676)
chr8 (62-217)||(2434400-2434555)
chr8 (51-234)||(2519204-2519387)
chr8 (62-217)||(2430820-2430975)
chr8 (51-231)||(2498870-2499047)
chr8 (62-216)||(1457860-1458014)
chr8 (62-216)||(2427567-2427721)
[»] chr7 (1 HSPs)
chr7 (236-315)||(23924846-23924925)
[»] chr6 (2 HSPs)
chr6 (236-315)||(11845818-11845897)
chr6 (57-93)||(11846008-11846044)


Alignment Details
Target: chr8 (Bit Score: 590; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 15 - 628
Target Start/End: Original strand, 2507366 - 2507979
Alignment:
Q  15 cataggcacgtggattgatagaagattttgggtcactcataagagtcctcatgtaaggatcacaagacaagtaaagatttttaaccaatacagtatcatt 114  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2507366 cataggcacgtggattgatagaagcttttgggtcactcataagagtcctcatgtaaggatcacaagacaagtaaagatttttaaccaatacagtatcatt 2507465  T
Q  115 ggaaccttctggaagcttaagatttatagtactatcaacaatgttgaggtctgattctttaggaaaaccagacacgtagtgtttcagaagcacttgcttg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2507466 ggaaccttctggaagcttaagatttatagtactatcaacaatgttgaggtctgattctttaggaaaaccagacacatagtgtttcagaagcacttgcttg 2507565  T
Q  215 ttctttacttgtgccattttttgttattgtgattgtcgaatatgattattcaatttataacacaaaaatcaaagaaaaaatgttggtatgaaatgtgatg 314  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2507566 ttctttacttgtgccattttttgttattgtgattgttgaatctgattattcaatttataacacaaaaatcaaagaaaaaatgttggtatgaaatgtgatg 2507665  T
Q  315 attatgtcatttgtgatcttatataagagaaagtttaatttatgggaatgtaattatagtccaataaacacgtaaggtaagatatcaaagtgaaactcgc 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2507666 attatgtcatttgtgatcttatataagagaaagtttaatttatgggaatgtaattatagtccaataaacacgtaaggtaagatatcaaagtgaaactcgc 2507765  T
Q  415 atccggcctaataaactgtacaccttcacactagttagttattgtcggaaaaaacacacctgttcacacttgtttatctcaaaaacaataaacctgttca 514  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  2507766 atccggcctaataaactgtacaccttcacactagttagttattgtcggaaaaaacacagctgttcacactcgtttatctcaaaaacaataaacctgttca 2507865  T
Q  515 catttaagggacaaaaatacaattggttcctagaacattctataacgatcttaaatgataaataattatgaaaataatatgtatatttcatgtattaaaa 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2507866 catttaagggacaaaaatacaattggttcctagaacattctataacgatcttaaatgataaataattatgaaaataatatgtatatttcatgtattaaaa 2507965  T
Q  615 atcaaaatatttga 628  Q
    ||||||||||||||    
T  2507966 atcaaaatatttga 2507979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 235
Target Start/End: Original strand, 2514458 - 2514676
Alignment:
Q  17 taggcacgtggattgatagaagattttgggtcactcataagagtcctcatgtaaggatcacaagacaagtaaagatttttaaccaatacagtatcattgg 116  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2514458 taggcacgtggattgatagaagcttttgggtcactcataagagtcctcatttaaggatcacaagacaagtaaagatttttaaccaatacagtatcattgg 2514557  T
Q  117 aaccttctggaagcttaagatttatagtactatcaacaatgttgaggtctgattctttaggaaaaccagacacgtagtgtttcagaagcacttgcttgtt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||    
T  2514558 aaccttctggaagcttaagatttatagtactatcaacaatgttgaggtctgattctttaggaaaaccagacacataatgtttcagaagcacttgctggtt 2514657  T
Q  217 ctttacttgtgccattttt 235  Q
    ||||||||| |||||||||    
T  2514658 ctttacttgagccattttt 2514676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 62 - 217
Target Start/End: Complemental strand, 2434555 - 2434400
Alignment:
Q  62 ctcatgtaaggatcacaagacaagtaaagatttttaaccaatacagtatcattggaaccttctggaagcttaagatttatagtactatcaacaatgttga 161  Q
    |||||||||||||||||||||||||| |||||||| | ||| ||   |||||||||||||| ||||||||| ||  |||| ||||| |||||||||||||    
T  2434555 ctcatgtaaggatcacaagacaagtacagatttttgagcaaaaccacatcattggaaccttgtggaagcttgagtgttatggtactgtcaacaatgttga 2434456  T
Q  162 ggtctgattctttaggaaaaccagacacgtagtgtttcagaagcacttgcttgttc 217  Q
    |||||||||||||||||||||||||||| ||||  ||||||| |||||||||||||    
T  2434455 ggtctgattctttaggaaaaccagacacatagtccttcagaatcacttgcttgttc 2434400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 51 - 234
Target Start/End: Original strand, 2519204 - 2519387
Alignment:
Q  51 tcataagagtcctcatgtaaggatcacaagacaagtaaagatttttaaccaatacagtatcattggaaccttctggaagcttaagatttatagtactatc 150  Q
    |||||||| |||||||||||||||||||||||||||| |||||||| | ||  | |  |||||||||| ||| ||||||||| ||| |||| ||||| ||    
T  2519204 tcataagattcctcatgtaaggatcacaagacaagtagagatttttgagcagaagaacatcattggaagcttgtggaagcttgagagttatggtactgtc 2519303  T
Q  151 aacaatgttgaggtctgattctttaggaaaaccagacacgtagtgtttcagaagcacttgcttgttctttacttgtgccatttt 234  Q
    ||  ||||| | ||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||| |||| ||||||||    
T  2519304 aatgatgttcatgtctgattctttaggaaaaccagacacatagtgtttcagaattacttgcttgttctttgcttgcgccatttt 2519387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 62 - 217
Target Start/End: Complemental strand, 2430975 - 2430820
Alignment:
Q  62 ctcatgtaaggatcacaagacaagtaaagatttttaaccaatacagtatcattggaaccttctggaagcttaagatttatagtactatcaacaatgttga 161  Q
    |||||||||||||||||||||||||| |||||||| | ||  |||  |||||| ||||||| ||||||||| ||| |||||||||| || ||||| || |    
T  2430975 ctcatgtaaggatcacaagacaagtacagattttttagcagaacaacatcatttgaaccttgtggaagcttgagagttatagtactgtctacaatattca 2430876  T
Q  162 ggtctgattctttaggaaaaccagacacgtagtgtttcagaagcacttgcttgttc 217  Q
     ||||||||||||||||||||||||||| ||||  ||||||| |||||||||||||    
T  2430875 tgtctgattctttaggaaaaccagacacatagtccttcagaatcacttgcttgttc 2430820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 51 - 231
Target Start/End: Original strand, 2498870 - 2499047
Alignment:
Q  51 tcataagagtcctcatgtaaggatcacaagacaagtaaagatttttaaccaatacagtatcattggaaccttctggaagcttaagatttatagtactatc 150  Q
    |||| ||| |||||||| | ||||||||||||||||| | |||||| | ||  |||   ||||||||||||| ||||||||||||| | ||  |||| ||    
T  2498870 tcatgagattcctcatgaatggatcacaagacaagtataaattttttagcagaaca---tcattggaaccttgtggaagcttaagagtaattatactttc 2498966  T
Q  151 aacaatgttgaggtctgattctttaggaaaaccagacacgtagtgtttcagaagcacttgcttgttctttacttgtgccat 231  Q
    || |||||| | |||||||||||||||||||||||| || ||||  ||||||| ||||||||||||| | |||||||||||    
T  2498967 aataatgttcatgtctgattctttaggaaaaccagatacatagtccttcagaatcacttgcttgttcctcacttgtgccat 2499047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 62 - 216
Target Start/End: Complemental strand, 1458014 - 1457860
Alignment:
Q  62 ctcatgtaaggatcacaagacaagtaaagatttttaaccaatacagtatcattggaaccttctggaagcttaagatttatagtactatcaacaatgttga 161  Q
    |||| |||||||||||| || ||||| |||||||| | ||  |||  |||||||||||||| |||||| || ||| | || |||||||||||||  || |    
T  1458014 ctcaggtaaggatcacaggataagtagagattttttagcagaacaacatcattggaaccttgtggaaggttgagaataattgtactatcaacaacattca 1457915  T
Q  162 ggtctgattctttaggaaaaccagacacgtagtgtttcagaagcacttgcttgtt 216  Q
     ||||||||| ||||||||||||||||| |||| | ||| || ||||||||||||    
T  1457914 tgtctgattccttaggaaaaccagacacatagtctctcaaaatcacttgcttgtt 1457860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 62 - 216
Target Start/End: Complemental strand, 2427721 - 2427567
Alignment:
Q  62 ctcatgtaaggatcacaagacaagtaaagatttttaaccaatacagtatcattggaaccttctggaagcttaagatttatagtactatcaacaatgttga 161  Q
    |||| |||||||||||| || ||||| |||||||| | ||  |||  |||||||||||||| |||||| || ||| | || |||||||||||||  || |    
T  2427721 ctcaggtaaggatcacaggataagtagagatttttgagcagaacaacatcattggaaccttgtggaaggttgagaataattgtactatcaacaacattca 2427622  T
Q  162 ggtctgattctttaggaaaaccagacacgtagtgtttcagaagcacttgcttgtt 216  Q
     ||||||||| ||||||||||||||||| |||| | ||| || ||||||||||||    
T  2427621 tgtctgattccttaggaaaaccagacacatagtctctcaaaatcacttgcttgtt 2427567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 236 - 315
Target Start/End: Complemental strand, 23924925 - 23924846
Alignment:
Q  236 tgttattgtgattgtcgaatatgattattcaatttataacacaaaaatcaaagaaaaaatgttggtatgaaatgtgatga 315  Q
    ||||||||||||||| |||| ||||| |||||||||||||||||||||||||| |||||||| ||| |||  ||||||||    
T  23924925 tgttattgtgattgttgaatctgattcttcaatttataacacaaaaatcaaagtaaaaatgtaggtgtgagttgtgatga 23924846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 236 - 315
Target Start/End: Complemental strand, 11845897 - 11845818
Alignment:
Q  236 tgttattgtgattgtcgaatatgattattcaatttataacacaaaaatcaaagaaaaaatgttggtatgaaatgtgatga 315  Q
    ||||||||||||||| |||| ||||| |||||||||||||||||||||||||| |||||||| ||| |||  ||||||||    
T  11845897 tgttattgtgattgttgaatctgattcttcaatttataacacaaaaatcaaagtaaaaatgtaggtgtgagttgtgatga 11845818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 11846044 - 11846008
Alignment:
Q  57 gagtcctcatgtaaggatcacaagacaagtaaagatt 93  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  11846044 gagtcctcgtgtaaggttcacaagacaagtaaagatt 11846008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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