View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14684_low_14 (Length: 459)
Name: NF14684_low_14
Description: NF14684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14684_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 93; Significance: 4e-45; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 160 - 264
Target Start/End: Complemental strand, 19197300 - 19197196
Alignment:
| Q |
160 |
ttgacaaatatccaggagttttagaagcaaagatctaagtggttgtacataattctatcaatagctcttagacatcattaatactaaaacaataaatgat |
259 |
Q |
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| T |
19197300 |
ttgacaaatatccagtagttttagaagcaaagatctaagtggttgtacatagttctatcaatagctcttagtcatcattaatactaaaacaataaatgat |
19197201 |
T |
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| Q |
260 |
gctat |
264 |
Q |
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||||| |
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| T |
19197200 |
gctat |
19197196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 19197418 - 19197285
Alignment:
| Q |
18 |
aatacagttgcagacagagcgagagccaaggctaaggaatgccgcccnnnnnnngaaaaggtacaag------ggaaggcaagtacaattccaagtgcgg |
111 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||| |
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| T |
19197418 |
aatatagttgcagacagagcgagagccaaggctaaggaatgccgcccaaaaaaagaaaagttacaagtaaaagggaaggcaagtacaattccaagtgcgg |
19197319 |
T |
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| Q |
112 |
agttacttgaagagttaattgacaaatatccagt |
145 |
Q |
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| T |
19197318 |
agttacttgaagagttaattgacaaatatccagt |
19197285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 164 - 262
Target Start/End: Complemental strand, 19201379 - 19201281
Alignment:
| Q |
164 |
caaatatccaggagttttagaagcaaagatctaagtggttgtacataattctatcaatagctcttagacatcattaatactaaaacaataaatgatgct |
262 |
Q |
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| T |
19201379 |
caaacatcaaggagtttgagaggcaaagatctaagtgcttgtacatagttctatctatagctcttactcatcatttatgctcaaacaatacatgatgct |
19201281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 284 - 450
Target Start/End: Original strand, 13460657 - 13460826
Alignment:
| Q |
284 |
gtggcactgacacgtcattacgtggcactgcc---atgtcattattattattttnnnnnnnnnnnncttcagaatttctttttaatggttctttccaaaa |
380 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||| ||||||| |||||||||||||||||||| |
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| T |
13460657 |
gtggcactgacacgtcattacgtggcactgccgccacgtcattattattatttttttttaaaaaaacttcaaaatttctgtttaatggttctttccaaaa |
13460756 |
T |
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| Q |
381 |
tattaattgaacattattatcaaaatacccttannnnnnnaattaattaaaa-ataactatttctctcttc |
450 |
Q |
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| T |
13460757 |
tattaattgaatattattaccaaaataccctta-ttttttaattaattaaaagataactatttctctcttc |
13460826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 395
Target Start/End: Original strand, 14913611 - 14913658
Alignment:
| Q |
347 |
cttcagaatttctttttaatggttctttccaaaatattaattgaacatt |
395 |
Q |
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| T |
14913611 |
cttcagaatttctatttaatgttt-tttccaaaaaattaattgaacatt |
14913658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 395
Target Start/End: Original strand, 7346878 - 7346925
Alignment:
| Q |
347 |
cttcagaatttctttttaatggttctttccaaaatattaattgaacatt |
395 |
Q |
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| T |
7346878 |
cttcagaatttctatttaatgttt-tttccaaaaaattaattgaacatt |
7346925 |
T |
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