View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14684_low_15 (Length: 455)
Name: NF14684_low_15
Description: NF14684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14684_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 20 - 437
Target Start/End: Complemental strand, 38333841 - 38333426
Alignment:
| Q |
20 |
ctcccaattggaatgccttccatgtaaaccttcacaaagaaggcactgttgtaatcactgcagtcatttacttcaccaccttgttgctgaattggttgcc |
119 |
Q |
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| T |
38333841 |
ctcccaattggaatgccttccatgtaaaccttcacaaagaaggcactgttgtaatcactgcagtcatttacttcaccaccttgttgctgaattggttgcc |
38333742 |
T |
|
| Q |
120 |
aatgtcccctaacatgataaataatacaaaatttaataaagtgatgaaaaacaaacatagtagtttaaggttcatgttttgctttaacataccttgaggt |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38333741 |
aatgtcccctaacatgataaataatacaaaatttaataaagtgatgaca--caaacatagtagtttaaggttcatgttttgctttaacataccttgaggt |
38333644 |
T |
|
| Q |
220 |
ggaataatcaacatattgttgagtggtggaaatgctcaatccaaggttaagatcaggaaaaagatgttgttgatcaggattttggtgagtgatggaggat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38333643 |
ggaataatcaacatattgttgagtggtggaaatgctcaatccaaggttaagatcaggaaaaagatgttgttgatcaggattttggtgagtgatggaggat |
38333544 |
T |
|
| Q |
320 |
gaaacattagaggaattatgtttccttcttctactgttggaagaggaggaagaagaagtggaaccttttcccattgtggaaatgtagaatttggtaaaga |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38333543 |
gaaacattagaggaattatgtttccttcttctactgttggaagaggaggaagaagaagtggaaccttttcccattgtggaaatgtagaatttggtaaaga |
38333444 |
T |
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| Q |
420 |
atattgtagtagtaagaa |
437 |
Q |
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|||||||||||||||||| |
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| T |
38333443 |
atattgtagtagtaagaa |
38333426 |
T |
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