View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14684_low_16 (Length: 441)
Name: NF14684_low_16
Description: NF14684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14684_low_16 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 4 - 424
Target Start/End: Complemental strand, 783506 - 783086
Alignment:
| Q |
4 |
atgaaaatggcgagaaaatatcgaatatatattctatcatgtttattggttgacgtgaaaattaaaagaagaaatatggatagtaaatggtcccataagt |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
783506 |
atgaaaatggcgagaaaatatcgaatatatattctatcatgtttattggttgacgtgaaaattaaaagaagaaatatggatagtaaatggtcccataagt |
783407 |
T |
|
| Q |
104 |
tgtagcaatttttgtgacttcgaagacaccaaaaatttgcaagtacttgaaaatatgtggaccattagagagacttaccaagggcattgataggtgagac |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
783406 |
tgtagcaatttttgtgacttcgaagacaccaaaaatttgcaagtacttgaaaatatgtggaccattagagagacttaccaagggcattgataggtgagac |
783307 |
T |
|
| Q |
204 |
aggagtttggaagaagataacagaagagacgatgacaacgacacgcttaacacaatttccgactgagtgtgtcacaggtgacactttctctaatatccca |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
783306 |
aggagtttggaagaagataacagaagagacgatgacaacgacacgcttaacgcaatttccgactgagtgtgtcacaggtgacactttctctaatatccca |
783207 |
T |
|
| Q |
304 |
tatgaaacctgccaccaaatgaattaagctccaacatcgatatgcaacaatgctcaataagtaagttactattactacgggaaatgttctaacattagca |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
783206 |
tatgaaacctgccaccaaatgaattaagctccaacatcgatatgcaacaatgctcaataagtaagttactattactacgggaaatgttctaacattagca |
783107 |
T |
|
| Q |
404 |
actaaatatggtagtctgtac |
424 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
783106 |
actaaatatggtaatctgtac |
783086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University