View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14684_low_18 (Length: 439)

Name: NF14684_low_18
Description: NF14684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14684_low_18
NF14684_low_18
[»] chr8 (23 HSPs)
chr8 (15-317)||(20693699-20693996)
chr8 (128-271)||(14130107-14130249)
chr8 (139-314)||(24730928-24731105)
chr8 (136-314)||(26374796-26374975)
chr8 (128-268)||(2687687-2687826)
chr8 (134-271)||(2189733-2189868)
chr8 (156-314)||(24578810-24578968)
chr8 (137-248)||(24731192-24731302)
chr8 (210-304)||(30440645-30440740)
chr8 (218-311)||(24577622-24577716)
chr8 (137-271)||(2188355-2188490)
chr8 (163-268)||(2689092-2689195)
chr8 (156-271)||(16598190-16598305)
chr8 (126-198)||(42890406-42890477)
chr8 (136-268)||(31072134-31072271)
chr8 (217-271)||(26377973-26378027)
chr8 (198-271)||(16598108-16598181)
chr8 (175-236)||(18468626-18468686)
chr8 (169-259)||(25479451-25479540)
chr8 (174-269)||(2609546-2609640)
chr8 (201-259)||(30442481-30442539)
chr8 (198-259)||(28263840-28263901)
chr8 (134-198)||(42891675-42891739)
[»] chr7 (25 HSPs)
chr7 (126-314)||(1369703-1369891)
chr7 (156-271)||(24840085-24840199)
chr7 (138-271)||(27142608-27142740)
chr7 (128-259)||(11000831-11000961)
chr7 (126-272)||(8916380-8916525)
chr7 (126-314)||(6451753-6451941)
chr7 (156-314)||(1786581-1786739)
chr7 (126-268)||(5934549-5934690)
chr7 (156-314)||(11228879-11229037)
chr7 (188-314)||(1690196-1690322)
chr7 (156-270)||(35814814-35814926)
chr7 (135-271)||(30217755-30217890)
chr7 (134-241)||(7803042-7803148)
chr7 (156-271)||(27309648-27309762)
chr7 (128-239)||(3778714-3778823)
chr7 (156-254)||(11228679-11228777)
chr7 (156-259)||(1874494-1874594)
chr7 (134-271)||(4888697-4888833)
chr7 (134-243)||(4133285-4133393)
chr7 (141-271)||(1365613-1365742)
chr7 (156-198)||(1753631-1753673)
chr7 (156-198)||(1883503-1883545)
chr7 (216-269)||(8063888-8063941)
chr7 (217-269)||(4955957-4956009)
chr7 (181-259)||(18790231-18790307)
[»] chr2 (22 HSPs)
chr2 (135-271)||(23457588-23457723)
chr2 (134-315)||(33051515-33051696)
chr2 (126-314)||(5171588-5171776)
chr2 (126-272)||(32163774-32163920)
chr2 (126-271)||(21772316-21772460)
chr2 (128-269)||(32161974-32162115)
chr2 (134-271)||(36647234-36647370)
chr2 (154-243)||(23456545-23456633)
chr2 (178-271)||(36648907-36649001)
chr2 (162-271)||(4184870-4184979)
chr2 (134-271)||(12966418-12966554)
chr2 (139-268)||(28737782-28737910)
chr2 (137-271)||(36615150-36615285)
chr2 (197-314)||(280076-280193)
chr2 (126-286)||(8294507-8294664)
chr2 (134-270)||(15129332-15129467)
chr2 (126-199)||(28737919-28737991)
chr2 (177-245)||(12123950-12124017)
chr2 (156-194)||(29715168-29715206)
chr2 (156-271)||(33053359-33053473)
chr2 (226-271)||(1218389-1218434)
chr2 (134-198)||(33655642-33655705)
[»] chr1 (25 HSPs)
chr1 (136-271)||(12944058-12944192)
chr1 (126-314)||(10925638-10925823)
chr1 (126-314)||(10927092-10927278)
chr1 (134-271)||(28660757-28660894)
chr1 (126-271)||(8221430-8221574)
chr1 (156-268)||(50713658-50713769)
chr1 (174-314)||(31915447-31915588)
chr1 (134-271)||(239629-239765)
chr1 (126-259)||(10928243-10928375)
chr1 (154-294)||(9194974-9195113)
chr1 (134-258)||(23987527-23987654)
chr1 (129-272)||(28661074-28661215)
chr1 (134-271)||(9030958-9031095)
chr1 (139-294)||(43681375-43681535)
chr1 (126-232)||(26981490-26981596)
chr1 (160-258)||(33152756-33152855)
chr1 (135-231)||(31913359-31913453)
chr1 (226-294)||(9199317-9199387)
chr1 (203-259)||(8965854-8965910)
chr1 (134-198)||(40058113-40058177)
chr1 (135-259)||(28659577-28659702)
chr1 (156-198)||(8931234-8931275)
chr1 (126-259)||(8967806-8967939)
chr1 (156-256)||(21903709-21903807)
chr1 (255-314)||(10928005-10928065)
[»] chr4 (21 HSPs)
chr4 (126-271)||(13991382-13991526)
chr4 (126-272)||(7634021-7634166)
chr4 (154-271)||(38888021-38888137)
chr4 (173-270)||(13990727-13990823)
chr4 (156-259)||(18689554-18689656)
chr4 (157-268)||(10494848-10494958)
chr4 (135-259)||(18657054-18657177)
chr4 (174-314)||(9260470-9260611)
chr4 (139-271)||(22486792-22486921)
chr4 (156-268)||(21433596-21433707)
chr4 (156-271)||(3765240-3765354)
chr4 (139-243)||(7724093-7724193)
chr4 (134-243)||(17254894-17255002)
chr4 (134-268)||(40206093-40206226)
chr4 (126-188)||(22486714-22486776)
chr4 (202-248)||(50519223-50519269)
chr4 (135-239)||(19935461-19935563)
chr4 (156-248)||(53477245-53477338)
chr4 (156-198)||(54700630-54700672)
chr4 (156-257)||(15848361-15848460)
chr4 (134-198)||(50515906-50515970)
[»] scaffold0251 (1 HSPs)
scaffold0251 (135-314)||(9601-9780)
[»] scaffold0240 (3 HSPs)
scaffold0240 (144-314)||(1555-1725)
scaffold0240 (126-292)||(15967-16131)
scaffold0240 (126-250)||(14808-14932)
[»] chr6 (20 HSPs)
chr6 (143-268)||(1127199-1127323)
chr6 (135-248)||(8048978-8049089)
chr6 (134-258)||(27822129-27822253)
chr6 (203-259)||(34373865-34373921)
chr6 (158-268)||(12882067-12882177)
chr6 (156-273)||(11658871-11658987)
chr6 (136-271)||(32361310-32361443)
chr6 (182-296)||(24443130-24443244)
chr6 (157-256)||(33615538-33615636)
chr6 (156-230)||(14238419-14238492)
chr6 (135-259)||(22910755-22910879)
chr6 (139-198)||(22873828-22873887)
chr6 (135-198)||(22889274-22889337)
chr6 (134-230)||(18727089-18727185)
chr6 (202-271)||(18727923-18727992)
chr6 (127-243)||(33215167-33215282)
chr6 (226-294)||(14216812-14216882)
chr6 (156-198)||(29340840-29340881)
chr6 (178-239)||(12778454-12778514)
chr6 (156-256)||(24664221-24664320)
[»] chr3 (6 HSPs)
chr3 (126-259)||(2107858-2107988)
chr3 (136-271)||(2472702-2472836)
chr3 (134-314)||(8536380-8536564)
chr3 (156-236)||(45168353-45168434)
chr3 (126-198)||(33175849-33175921)
chr3 (134-294)||(365604-365764)
[»] scaffold0330 (1 HSPs)
scaffold0330 (144-314)||(17537-17707)
[»] scaffold0090 (1 HSPs)
scaffold0090 (198-314)||(15138-15254)
[»] scaffold0024 (2 HSPs)
scaffold0024 (156-269)||(145677-145790)
scaffold0024 (177-271)||(143974-144064)
[»] chr5 (7 HSPs)
chr5 (126-259)||(18252370-18252502)
chr5 (126-258)||(26140298-26140429)
chr5 (126-243)||(8456382-8456502)
chr5 (175-259)||(19497356-19497440)
chr5 (141-271)||(492508-492638)
chr5 (134-259)||(22440811-22440935)
chr5 (156-213)||(40778820-40778875)
[»] scaffold0054 (3 HSPs)
scaffold0054 (135-198)||(10669-10732)
scaffold0054 (156-198)||(37725-37766)
scaffold0054 (135-271)||(49264-49398)
[»] scaffold0184 (1 HSPs)
scaffold0184 (175-237)||(14177-14238)
[»] scaffold0078 (1 HSPs)
scaffold0078 (175-237)||(58606-58667)
[»] scaffold0110 (1 HSPs)
scaffold0110 (156-236)||(46767-46846)


Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 15 - 317
Target Start/End: Complemental strand, 20693996 - 20693699
Alignment:
Q  15 acttgcaatgcttgatcaactgcagtttcattggacttctccttgtattgatttctttttgttaacctccactcttgagcttctagactttcttgtagtt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  20693996 acttgcaatgcttgatcaactgcagtttcattggacttctccttgtattgatttctttttgttaacctcaactcttgagcttctagactttcttgtagtt 20693897  T
Q  115 cttcaactttaacgcagttggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttc 214  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  20693896 cttcaactttgacgcagttggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaa-tttgtgaaaatatggttc 20693798  T
Q  215 tggaatccatcagaaattgagaaaactctctaaagtattattgaagtaataaaagtttttattaggctacaaatgttaagttcaaatagagaaataacaa 314  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    |||||||||||||||    
T  20693797 cggaatccatcagaaattgagaaaactctctaaagtattattgaagtaataaaagtttttattagtctacaactgttaagt----atagagaaataacaa 20693702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 128 - 271
Target Start/End: Complemental strand, 14130249 - 14130107
Alignment:
Q  128 gcagttggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcag 227  Q
    ||||| ||||||||||||| || || |||||| |||||| ||||| | |||||||||||||||| ||| ||||| |||||| ||||| |||||||| |||    
T  14130249 gcagtcggaagcgtaggcttgcaagcgttaaatctagatcgaaaagagacaagtttgcaagcgataaa-tttgtgaaaataaggttccggaatccaccag 14130151  T
Q  228 aaattgagaaaactctctaaagtattattgaagtaataaaagtt 271  Q
    ||||||||||||||||| ||| ||||||||||  ||||||||||    
T  14130150 aaattgagaaaactctccaaaatattattgaatgaataaaagtt 14130107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 139 - 314
Target Start/End: Complemental strand, 24731105 - 24730928
Alignment:
Q  139 cgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgagaaa 238  Q
    ||||||||||| || | ||||  |||||||||||  ||||||||||||||| |||||||| || |||||| | ||  ||||||||||| |||||||||||    
T  24731105 cgtaggctagcaagcgctaaatttagattgaaaaggaacaagtttgcaagcaacaaactt-gtgaaaataggatttcggaatccatcaaaaattgagaaa 24731007  T
Q  239 actctctaaagtattattgaagtaataaaagtt-tttattaggcta--caaatgttaagttcaaatagagaaataacaa 314  Q
    |||||||||| ||||||||||  |||||||||| | ||||||||||  ||| ||||||||| |||||| ||||||||||    
T  24731006 actctctaaaatattattgaatgaataaaagttatctattaggctattcaactgttaagtttaaatagggaaataacaa 24730928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 136 - 314
Target Start/End: Complemental strand, 26374975 - 26374796
Alignment:
Q  136 aagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgag 235  Q
    ||||||| |||||| || ||||| ||||||||||||| || |||||| ||||||||||||||| ||||||||| ||||  | |||||| |||||||| ||    
T  26374975 aagcgtaagctagcaagcgttaagcctagattgaaaagaa-caagttcgcaagcgacaaactt-gtaaaaatagggtttcgaaatccaccagaaattaag 26374878  T
Q  236 aaaactctctaaagtattattgaagtaataaaagtttt---tattaggctacaaatgttaagttcaaatagagaaataacaa 314  Q
    ||||||||||||| ||||||||||  |||||||||| |   | ||||||||||| ||||||| | |||||| ||||| ||||    
T  26374877 aaaactctctaaattattattgaatgaataaaagttatgcctcttaggctacaattgttaagcttaaatagtgaaattacaa 26374796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 128 - 268
Target Start/End: Complemental strand, 2687826 - 2687687
Alignment:
Q  128 gcagttggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcag 227  Q
    ||||| ||||||| || |||||||| | ||||||||||| |||||  |||||||||||||||||||||| |||| |||||| |||||| |||||||  ||    
T  2687826 gcagtcggaagcgaagactagcgagcgctaaacctagatagaaaaagaacaagtttgcaagcgacaaac-ttgtgaaaatagggttctagaatccacaag 2687728  T
Q  228 aaattgagaaaactctctaaagtattattgaagtaataaaa 268  Q
    |||||||||||||||| | || ||||||||||  |||||||    
T  2687727 aaattgagaaaactctttgaaatattattgaatgaataaaa 2687687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 134 - 271
Target Start/End: Original strand, 2189733 - 2189868
Alignment:
Q  134 ggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattg 233  Q
    |||||||||||||||| || | ||||||| ||||||||| || |||||||||||||||||||||| || |||||| |||| ||||||||| || ||| ||    
T  2189733 ggaagcgtaggctagcaagcgctaaacctcgattgaaaagaa-caagtttgcaagcgacaaactt-gtgaaaataaggttttggaatccaccaaaaaatg 2189830  T
Q  234 agaaaactctctaaagtattattgaagtaataaaagtt 271  Q
    ||||||  |||||||||||||||||   ||||||||||    
T  2189831 agaaaaaactctaaagtattattgattgaataaaagtt 2189868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 156 - 314
Target Start/End: Original strand, 24578810 - 24578968
Alignment:
Q  156 taaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgagaaaactctctaaagtattat 255  Q
    ||||||||||| ||||| |||||||||||||||||  ||| | ||| |||||| ||||||||||||||  |||||||| |||||||||||||| ||||||    
T  24578810 taaacctagatcgaaaagaaacaagtttgcaagcggtaaa-tctgtgaaaatagggttctggaatccactagaaattgtgaaaactctctaaaatattat 24578908  T
Q  256 tgaagtaataaaagtt-tttattaggctacaaatgttaagttcaaatagagaaataacaa 314  Q
    | ||  ||||||||||     ||| ||||||||||||||| | |||||| ||||||||||    
T  24578909 ttaataaataaaagttgccccttaagctacaaatgttaagcttaaatagggaaataacaa 24578968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 137 - 248
Target Start/End: Complemental strand, 24731302 - 24731192
Alignment:
Q  137 agcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgaga 236  Q
    ||||||||||||| || | |||||||||||||||||  ||||||||||||||| |||||| |||| ||||||  |||  ||||| |||||||||||||||    
T  24731302 agcgtaggctagcaagcgctaaacctagattgaaaaggaacaagtttgcaagcaacaaac-ttgtgaaaatagagtttcggaattcatcagaaattgaga 24731204  T
Q  237 aaactctctaaa 248  Q
    ||||||||||||    
T  24731203 aaactctctaaa 24731192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 210 - 304
Target Start/End: Complemental strand, 30440740 - 30440645
Alignment:
Q  210 ggttctggaatccatcagaaattgagaaaactctctaaagtattattgaagtaataaaagttt-ttattaggctacaaatgttaagttcaaataga 304  Q
    ||||||| |||||| |||||||||||||||||||||||| ||||||||||  |||||||||||  | ||| ||||||| ||||||| | |||||||    
T  30440740 ggttctgaaatccaccagaaattgagaaaactctctaaaatattattgaatgaataaaagtttcatcttatgctacaactgttaagcttaaataga 30440645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 218 - 311
Target Start/End: Original strand, 24577622 - 24577716
Alignment:
Q  218 aatccatcagaaattgagaaaactctctaaagtattattgaagtaataaaag-tttttattaggctacaaatgttaagttcaaatagagaaataa 311  Q
    |||||| |||||||||||||||||||||||| ||||||||||  |||||||| |   | |||||||| || ||||||||| ||||||||||||||    
T  24577622 aatccaccagaaattgagaaaactctctaaaatattattgaatgaataaaagctgcctcttaggctataactgttaagtttaaatagagaaataa 24577716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 137 - 271
Target Start/End: Original strand, 2188355 - 2188490
Alignment:
Q  137 agcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaatt--ga 234  Q
    |||||||||||||  | |||||||||| ||| ||||  |   ||||||||||||||||| || ||||||||| ||||||| |||||| ||||||||  ||    
T  2188355 agcgtaggctagcatgcgttaaacctatattaaaaaagatttagtttgcaagcgacaaaatt-gtaaaaatagggttctgaaatccaccagaaattaaga 2188453  T
Q  235 gaaaactctctaaagtattattgaagtaataaaagtt 271  Q
     ||||||||||||| |||||||||   ||||||||||    
T  2188454 aaaaactctctaaaatattattgattgaataaaagtt 2188490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 163 - 268
Target Start/End: Complemental strand, 2689195 - 2689092
Alignment:
Q  163 agattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgagaaaactctctaaagtattattgaagta 262  Q
    |||||||||| ||||||||||||||||||||||   ||| |||||| ||||| || ||||| ||||||||||||||||||||| || | ||||||||  |    
T  2689195 agattgaaaagaaacaagtttgcaagcgacaaa-actgtgaaaatagggttccggcatcca-cagaaattgagaaaactctctgaaattttattgaaaga 2689098  T
Q  263 ataaaa 268  Q
    ||||||    
T  2689097 ataaaa 2689092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 271
Target Start/End: Complemental strand, 16598305 - 16598190
Alignment:
Q  156 taaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcag-aaattgagaaaactctctaaagtatta 254  Q
    ||||| ||||||  ||| ||||||||||||| ||||||||||| || |||||| |||||   ||| || ||| ||||||||||||||||||||| |||||    
T  16598305 taaacttagattagaaagaaacaagtttgcacgcgacaaactt-gtgaaaatagggttccaaaatacaccagtaaattgagaaaactctctaaaatatta 16598207  T
Q  255 ttgaagtaataaaagtt 271  Q
    |||||  ||||||||||    
T  16598206 ttgaatgaataaaagtt 16598190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 198
Target Start/End: Complemental strand, 42890477 - 42890406
Alignment:
Q  126 acgcagttggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactt 198  Q
    ||||| || ||||||||||||||| || | ||||||||||| ||||| || ||||||||||||||||||||||    
T  42890477 acgcaattagaagcgtaggctagcaagcgctaaacctagatagaaaagaa-caagtttgcaagcgacaaactt 42890406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 268
Target Start/End: Original strand, 31072134 - 31072271
Alignment:
Q  136 aagcgtaggctagcgagggttaaacctagattga------aaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaa 229  Q
    |||||||||||||| || | ||||||||||||||      ||| ||| ||||||||||| || ||||||  | |||||| ||||||| |||||| | ||     
T  31072134 aagcgtaggctagcaagcgctaaacctagattgagaaattaaaaaaaaaagtttgcaagagataaactta-tgaaaatagggttctgcaatccaaccgac 31072232  T
Q  230 attgagaaaactctctaaagtattattgaagtaataaaa 268  Q
    | |||||||||||||||||  |||||||||| |||||||    
T  31072233 actgagaaaactctctaaaacattattgaaggaataaaa 31072271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 26378027 - 26377973
Alignment:
Q  217 gaatccatcagaaattgagaaaactctctaaagtattattgaagtaataaaagtt 271  Q
    |||||||  ||||||||||||||||||||||| ||||||||||  ||||||||||    
T  26378027 gaatccactagaaattgagaaaactctctaaaatattattgaatgaataaaagtt 26377973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 198 - 271
Target Start/End: Complemental strand, 16598181 - 16598108
Alignment:
Q  198 ttgtaaaaatatggttctggaatccatcagaaattgagaaaactctctaaagtattattgaagtaataaaagtt 271  Q
    |||| |||||| ||||| | ||| || |||||| ||||||||||||||||| ||||||||||  ||||||||||    
T  16598181 ttgtgaaaatagggttccgaaatacaccagaaactgagaaaactctctaaaatattattgaatgaataaaagtt 16598108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 18468686 - 18468626
Alignment:
Q  175 aacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgaga 236  Q
    |||||| ||||||||||||||||| || |||||| ||||| |||||||| ||||||||||||    
T  18468686 aacaagcttgcaagcgacaaactt-gtgaaaatagggttccggaatccaccagaaattgaga 18468626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 259
Target Start/End: Original strand, 25479451 - 25479540
Alignment:
Q  169 aaaataaacaagtttgcaagcgacaaa-ctttgtaaaaatatggttctggaatccatcagaaattgagaaaactctctaaagtattattgaa 259  Q
    |||| ||||||| ||||||| |||||| |||||  |||||| ||||| |||||||| ||||| ||||||||||||||| || | ||||||||    
T  25479451 aaaagaaacaaggttgcaagtgacaaatctttg--aaaataaggttccggaatccaccagaatttgagaaaactctctgaaattttattgaa 25479540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 269
Target Start/End: Original strand, 2609546 - 2609640
Alignment:
Q  174 aaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgagaaaactctctaaagtattattgaagtaataaaag 269  Q
    ||||||||||||||| ||||||| |||| |||||| ||||   |||| || |||||||||| ||| |||||| || ||||||||||  ||||||||    
T  2609546 aaacaagtttgcaagtgacaaac-ttgtgaaaatagggttacagaattcaccagaaattgataaagctctctgaaatattattgaatgaataaaag 2609640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 259
Target Start/End: Complemental strand, 30442539 - 30442481
Alignment:
Q  201 taaaaatatggttctggaatccatcagaaattgagaaaactctctaaagtattattgaa 259  Q
    |||||||| | ||||  ||||||| |||||||||||||||||| |||| ||||||||||    
T  30442539 taaaaataggattctaaaatccattagaaattgagaaaactctttaaaatattattgaa 30442481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 259
Target Start/End: Original strand, 28263840 - 28263901
Alignment:
Q  198 ttgtaaaaatatggttctggaatccatcagaaattgagaaaactctctaaagtattattgaa 259  Q
    |||| |||||| |||||| || |||| ||||||||  |||||||||||||| ||||||||||    
T  28263840 ttgtgaaaatagggttctagagtccagcagaaattatgaaaactctctaaaatattattgaa 28263901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 198
Target Start/End: Original strand, 42891675 - 42891739
Alignment:
Q  134 ggaagcgtagg-ctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactt 198  Q
    ||||||||||| ||||| || | ||||||||||| ||||| || ||||||||||||||||||||||    
T  42891675 ggaagcgtagggctagcaagcgctaaacctagatagaaaagaa-caagtttgcaagcgacaaactt 42891739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 126 - 314
Target Start/End: Complemental strand, 1369891 - 1369703
Alignment:
Q  126 acgcagttggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatc 225  Q
    ||||||| ||||||| |||||||| || ||||||||||||||||||| |||||||||||||||||| |||| |||| |||||| ||||| |||||||| |    
T  1369891 acgcagtcggaagcggaggctagcaagcgttaaacctagattgaaaagaaacaagtttgcaagcgataaac-ttgttaaaatagggttccggaatccacc 1369793  T
Q  226 agaaattgagaaaactctctaaagtattattgaagtaataaaagtt-tttattaggctacaaatgttaagttcaaatagagaaataacaa 314  Q
    |||||||||||||||||| |||| |||||||||| ||||||||||| | | ||||||||||| | ||||| | ||||||  |||||||||    
T  1369792 agaaattgagaaaactctataaaatattattgaattaataaaagttgtctcttaggctacaactattaagcttaaataggaaaataacaa 1369703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 156 - 271
Target Start/End: Complemental strand, 24840199 - 24840085
Alignment:
Q  156 taaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgagaaaactctctaaagtattat 255  Q
    ||||||||||||||||| ||||||||||||||||||||||||| || |||||| ||||| |||||||| |||||||||||||||||||||||| ||||||    
T  24840199 taaacctagattgaaaagaaacaagtttgcaagcgacaaactt-gtgaaaatagggttccggaatccaccagaaattgagaaaactctctaaaatattat 24840101  T
Q  256 tgaagtaataaaagtt 271  Q
    | ||  ||||||||||    
T  24840100 tcaataaataaaagtt 24840085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 138 - 271
Target Start/End: Complemental strand, 27142740 - 27142608
Alignment:
Q  138 gcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgagaa 237  Q
    |||||| ||||| | |||||||||||||||||||| ||||||||||||||||||||||| |||| |||||| |||||  ||| ||| |||||||||||||    
T  27142740 gcgtagcctagcaatggttaaacctagattgaaaagaaacaagtttgcaagcgacaaac-ttgtgaaaatagggttcctgaaaccaccagaaattgagaa 27142642  T
Q  238 aactctctaaagtattattgaagtaataaaagtt 271  Q
    |||||||| || ||||||| || |||||||||||    
T  27142641 aactctctgaaatattattcaattaataaaagtt 27142608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 128 - 259
Target Start/End: Original strand, 11000831 - 11000961
Alignment:
Q  128 gcagttggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcag 227  Q
    ||||| ||||| |||||||||| || | ||||||||||||||||| ||||||||| ||||||||||||| | || |||||| ||||| |||||||| |||    
T  11000831 gcagtcggaagtgtaggctagcaagcgctaaacctagattgaaaagaaacaagttcgcaagcgacaaac-tagtgaaaatagggttcaggaatccaccag 11000929  T
Q  228 aaattgagaaaactctctaaagtattattgaa 259  Q
    |||||| |||||||||||||| ||||||||||    
T  11000930 aaattgggaaaactctctaaaatattattgaa 11000961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 126 - 272
Target Start/End: Original strand, 8916380 - 8916525
Alignment:
Q  126 acgcagttggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatc 225  Q
    |||||||  |||||||| |||||  || |||||||||||||| ||||| ||||||||||||| ||| |||||| ||  |||||  ||||||||||||| |    
T  8916380 acgcagtcagaagcgtatgctagtaagcgttaaacctagatttaaaatgaacaagtttgcaaacgataaactt-gtggaaatagagttctggaatccacc 8916478  T
Q  226 agaaattgagaaaactctctaaagtattattgaagtaataaaagttt 272  Q
    ||||||||||||||||||||||| ||||||||||  |||||||||||    
T  8916479 agaaattgagaaaactctctaaaatattattgaatgaataaaagttt 8916525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 126 - 314
Target Start/End: Original strand, 6451753 - 6451941
Alignment:
Q  126 acgcagttggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatc 225  Q
    ||||||| ||||||| | |||| | || | |||| |||||||||||  |||||||||||||||||||||||  ||| |||||| ||||  |||||||| |    
T  6451753 acgcagtcggaagcgaaagctatcaagcgctaaatctagattgaaaggaaacaagtttgcaagcgacaaac-ctgtgaaaataaggtttcggaatccaac 6451851  T
Q  226 agaaattgagaaaactctctaaagtattattgaagtaataaaagtt-tttattaggctacaaatgttaagttcaaatagagaaataacaa 314  Q
    | ||||||| ||||||||||||| ||||||||||  ||| |||||| | | ||||||||||| ||||||||| |||||| ||||||||||    
T  6451852 aaaaattgaaaaaactctctaaaatattattgaatgaattaaagttgtctcttaggctacaactgttaagtttaaatagggaaataacaa 6451941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 156 - 314
Target Start/End: Complemental strand, 1786739 - 1786581
Alignment:
Q  156 taaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgagaaaactctctaaagtattat 255  Q
    ||||||||||| |||||  |||||||||||||||||||||| | |  |||||| |||||  ||||||||||||||||| |||||||||||||| ||||||    
T  1786739 taaacctagatagaaaaataacaagtttgcaagcgacaaacat-gcgaaaatagggttccagaatccatcagaaattgcgaaaactctctaaaatattat 1786641  T
Q  256 tgaagtaataaaagttt-ttattaggctacaaatgttaagttcaaatagagaaataacaa 314  Q
    | ||  |||||||||||  | ||||||||||| ||||||| | |||||| ||||||||||    
T  1786640 ttaatgaataaaagtttcctcttaggctacaactgttaagcttaaatagggaaataacaa 1786581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 126 - 268
Target Start/End: Complemental strand, 5934690 - 5934549
Alignment:
Q  126 acgcagttggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatc 225  Q
    |||||||  ||||||||||||||| || | ||||||||||||||||| |||||| |||||||||||||||| |||| |||||| | ||   ||||||||     
T  5934690 acgcagtcagaagcgtaggctagcaagcgctaaacctagattgaaaagaaacaaatttgcaagcgacaaac-ttgtgaaaataggatttcagaatccatt 5934592  T
Q  226 agaaattgagaaaactctctaaagtattattgaagtaataaaa 268  Q
    |||||||||||||| |||||||| ||||||||||  |||||||    
T  5934591 agaaattgagaaaattctctaaaatattattgaatgaataaaa 5934549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 156 - 314
Target Start/End: Complemental strand, 11229037 - 11228879
Alignment:
Q  156 taaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgagaaaactctctaaagtattat 255  Q
    |||||||||||||||||  |||||||||||| ||||||||| | || |||| | |||||  ||||||| |||||||||| ||||||||||||| ||||||    
T  11229037 taaacctagattgaaaaagaacaagtttgcaggcgacaaacgt-gtgaaaaaagggttccagaatccaccagaaattgataaaactctctaaaatattat 11228939  T
Q  256 tgaagtaataaaagtt-tttattaggctacaaatgttaagttcaaatagagaaataacaa 314  Q
    |||   ||||||||||   | ||| ||||||||||||||| | |||||| ||||||||||    
T  11228938 tgagtgaataaaagttgcctcttatgctacaaatgttaagcttaaatagggaaataacaa 11228879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 188 - 314
Target Start/End: Original strand, 1690196 - 1690322
Alignment:
Q  188 gcgacaaactttgtaaaaatatggttctggaatccatcagaaattgagaaaactctctaaagtattattgaagtaataaaagtt-tttattaggctacaa 286  Q
    |||||||| ||||| |||||| |||||||||||||||||||||||||||||| |||||||| || |||| ||  |||||||||| | | |||||||||||    
T  1690196 gcgacaaa-tttgtgaaaatagggttctggaatccatcagaaattgagaaaattctctaaaatagtatttaatgaataaaagttgtctcttaggctacaa 1690294  T
Q  287 atgttaagttcaaatagagaaataacaa 314  Q
     ||||||  | |||||| ||||||||||    
T  1690295 ctgttaaaattaaatagcgaaataacaa 1690322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 156 - 270
Target Start/End: Complemental strand, 35814926 - 35814814
Alignment:
Q  156 taaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgagaaaactctctaaagtattat 255  Q
    |||| |||||||||||  || ||| |||||||||||||||||| ||||||||| |||||| ||||| | || ||||||||||||||||||||| ||||||    
T  35814926 taaatctagattgaaag-aaccaactttgcaagcgacaaactt-gtaaaaataaggttcttgaatctaccataaattgagaaaactctctaaaatattat 35814829  T
Q  256 tgaagtaataaaagt 270  Q
    ||||  |||||||||    
T  35814828 tgaatgaataaaagt 35814814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 135 - 271
Target Start/End: Complemental strand, 30217890 - 30217755
Alignment:
Q  135 gaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattga 234  Q
    ||||||||||||||| || | ||||||||||||||||   |||||||| ||||||||||||| |||| ||||||  |||||| |||||| ||| ||||||    
T  30217890 gaagcgtaggctagcaagcgctaaacctagattgaaa--gaacaagttcgcaagcgacaaac-ttgtgaaaatagagttctgaaatccaccagtaattga 30217794  T
Q  235 g--aaaactctctaaagtattattgaagtaataaaagtt 271  Q
    |  || |||||||||| |||||||||   ||||||||||    
T  30217793 gataacactctctaaaatattattgattgaataaaagtt 30217755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 134 - 241
Target Start/End: Original strand, 7803042 - 7803148
Alignment:
Q  134 ggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattg 233  Q
    ||||||||||| |||| |||||||||||||| | ||||| |||||||||||||||| |||||| || | |||||| ||||| |||||||| || || |||    
T  7803042 ggaagcgtaggttagcaagggttaaacctaggtcgaaaagaaacaagtttgcaagcaacaaac-ttatgaaaataaggttccggaatccaccataatttg 7803140  T
Q  234 agaaaact 241  Q
    ||| ||||    
T  7803141 agacaact 7803148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 156 - 271
Target Start/End: Original strand, 27309648 - 27309762
Alignment:
Q  156 taaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgagaaaactctctaaagtattat 255  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||| |||||| ||||||  ||||   || ||||| ||||||||||| |||  |||||    
T  27309648 taaacctagattgaaaagaaacaagtttgcaagcgacaaac-ttgtgaaaatagggttctctaatctgccaaaaattaagaaaactctccaaaaaattat 27309746  T
Q  256 tgaagtaataaaagtt 271  Q
    | ||  ||||||||||    
T  27309747 ttaatgaataaaagtt 27309762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 128 - 239
Target Start/End: Original strand, 3778714 - 3778823
Alignment:
Q  128 gcagttggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcag 227  Q
    |||||||||||||||||||  | ||   ||||  |||||||||| | ||||||||||||||||| |||||| || |||||| ||||| |||||||| |||    
T  3778714 gcagttggaagcgtaggctgacaagcactaaatatagattgaaa-tgaacaagtttgcaagcgagaaactt-gtgaaaatagggttccggaatccaccag 3778811  T
Q  228 aaattgagaaaa 239  Q
    ||||||||||||    
T  3778812 aaattgagaaaa 3778823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 254
Target Start/End: Complemental strand, 11228777 - 11228679
Alignment:
Q  156 taaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaa-ttgagaaaactctctaaagtatta 254  Q
    ||||||| |||  |||| ||||||||||| ||||||||||||| ||  ||||| |||||| ||||||| |||||| |||||||||||||||||| |||||    
T  11228777 taaaccttgataaaaaagaaacaagtttggaagcgacaaactt-gtggaaatagggttctagaatccaccagaaaattgagaaaactctctaaaatatta 11228679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 156 - 259
Target Start/End: Complemental strand, 1874594 - 1874494
Alignment:
Q  156 taaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattga-gaaaactctctaaagtatta 254  Q
    ||||||| ||||||||| |||||||||||||| |||||||| |||| |||||| |||||  ||||||| |   |||||| |||||||||||||| |||||    
T  1874594 taaaccttgattgaaaagaaacaagtttgcaaacgacaaac-ttgtgaaaataaggttcaagaatccacc---aattgaggaaaactctctaaaatatta 1874499  T
Q  255 ttgaa 259  Q
    |||||    
T  1874498 ttgaa 1874494  T

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Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 134 - 271
Target Start/End: Original strand, 4888697 - 4888833
Alignment:
Q  134 ggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattg 233  Q
    ||||||||||||||||  | | | ||||||||| ||||| || ||||||||||||||||||||  ||| ||||||  |||| ||||| || |||||||||    
T  4888697 ggaagcgtaggctagcatgcgctgaacctagatagaaaagaa-caagtttgcaagcgacaaac-ctgtgaaaatagagttccggaattcaccagaaattg 4888794  T
Q  234 agaaa-actctctaaagtattattgaagtaataaaagtt 271  Q
    | ||| |||||||||| |||||||||   ||||||||||    
T  4888795 aaaaacactctctaaaatattattgattgaataaaagtt 4888833  T

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Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 134 - 243
Target Start/End: Original strand, 4133285 - 4133393
Alignment:
Q  134 ggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattg 233  Q
    |||||||||||||||| |  | ||||| ||||||||| || ||||| ||| |||||||||||| |||| ||||||  |||||| |||||   ||||||||    
T  4133285 ggaagcgtaggctagcaaatgctaaacttagattgaagatgaacaaattttcaagcgacaaac-ttgtgaaaatagagttctgaaatcccctagaaattg 4133383  T
Q  234 agaaaactct 243  Q
    ||||||||||    
T  4133384 agaaaactct 4133393  T

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Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 141 - 271
Target Start/End: Complemental strand, 1365742 - 1365613
Alignment:
Q  141 taggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgagaaaa- 239  Q
    ||||||||| || | ||||||||||||||||  || |||||||| ||||||  ||||| || |||||| |||||   |||||| || ||||||||||||     
T  1365742 taggctagcaagcgctaaacctagattgaaaggaa-caagtttgtaagcgatgaactt-gtgaaaatagggttccataatccaccaaaaattgagaaaaa 1365645  T
Q  240 ctctctaaagtattattgaagtaataaaagtt 271  Q
    ||||||||| ||||||||||  ||||||||||    
T  1365644 ctctctaaaatattattgaatgaataaaagtt 1365613  T

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Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 1753631 - 1753673
Alignment:
Q  156 taaacctagattgaaaataaacaagtttgcaagcgacaaactt 198  Q
    |||||||| |||||||| |||||||||||||||||||||||||    
T  1753631 taaacctaaattgaaaagaaacaagtttgcaagcgacaaactt 1753673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 1883545 - 1883503
Alignment:
Q  156 taaacctagattgaaaataaacaagtttgcaagcgacaaactt 198  Q
    ||||||||||||||||| |||||||||||||| ||||||||||    
T  1883545 taaacctagattgaaaagaaacaagtttgcaaacgacaaactt 1883503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 8063888 - 8063941
Alignment:
Q  216 ggaatccatcagaaattgagaaaactctctaaagtattattgaagtaataaaag 269  Q
    ||||||||  |||||||||||||| |||||||| |||||||||| |||||||||    
T  8063888 ggaatccactagaaattgagaaaattctctaaaatattattgaattaataaaag 8063941  T

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Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 4955957 - 4956009
Alignment:
Q  217 gaatccatcagaaattgagaaaactctctaaagtattattgaagtaataaaag 269  Q
    |||||||| ||||||||||||||||| ||||| ||||||||||  ||||||||    
T  4955957 gaatccattagaaattgagaaaactccctaaaatattattgaatgaataaaag 4956009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 259
Target Start/End: Original strand, 18790231 - 18790307
Alignment:
Q  181 tttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgagaaaactctctaaagtattattgaa 259  Q
    ||||||||||||||  | ||| |||||| | || | ||||||| |||||||||||||||||||||||| ||||| ||||    
T  18790231 tttgcaagcgacaa--tatgtgaaaataggattttagaatccaccagaaattgagaaaactctctaaaatattactgaa 18790307  T

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Target: chr2 (Bit Score: 81; Significance: 6e-38; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 135 - 271
Target Start/End: Complemental strand, 23457723 - 23457588
Alignment:
Q  135 gaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattga 234  Q
    |||| |||||||||| || | ||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||| |||||||| || |||||||    
T  23457723 gaagtgtaggctagcaagcgctaaacctagattgaaaataaacaagtttgcaagcgacaaac-ttgtgaaaatagggttccggaatccaccaaaaattga 23457625  T
Q  235 gaaaactctctaaagtattattgaagtaataaaagtt 271  Q
    |||||||||||||| ||||||||||  ||||||||||    
T  23457624 gaaaactctctaaaatattattgaatgaataaaagtt 23457588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 134 - 315
Target Start/End: Complemental strand, 33051696 - 33051515
Alignment:
Q  134 ggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattg 233  Q
    |||||| ||||||||| || | |||||||| ||||||||  ||||||||||||||||||||||||| | |||||| ||||||||||||||  ||||||||    
T  33051696 ggaagcttaggctagcaagcgctaaacctaaattgaaaaagaacaagtttgcaagcgacaaacttt-tgaaaatagggttctggaatccactagaaattg 33051598  T
Q  234 agaaaactctctaaagtattattgaagtaataaaagtt-tttattaggctacaaatgttaagttcaaatagagaaataacaac 315  Q
    ||||||||||||||| ||||||||||  |||| ||||| | | |||| |||||| ||||||| | ||||||  ||||||||||    
T  33051597 agaaaactctctaaaatattattgaatgaatataagttgtctcttagactacaattgttaagcttaaataggaaaataacaac 33051515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 126 - 314
Target Start/End: Original strand, 5171588 - 5171776
Alignment:
Q  126 acgcagttggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatc 225  Q
    ||||||||||||||||||| || | || | |||| |||||||||||| | ||||||||||||||||||||| ||||||||||| |||||  |||||||      
T  5171588 acgcagttggaagcgtaggttaacaagcgctaaatctagattgaaaagagacaagtttgcaagcgacaaac-ttgtaaaaatagggttcaagaatccact 5171686  T
Q  226 agaaattgagaaaactctctaaagtattattgaagtaataaaagtt-tttattaggctacaaatgttaagttcaaatagagaaataacaa 314  Q
    ||||||||||||||||||||||| ||||||| ||  ||||||| || | | |||| |||||| ||||||| | ||||||  |||||||||    
T  5171687 agaaattgagaaaactctctaaaatattatttaatgaataaaaattgtctcttagactacaactgttaagcttaaatagcaaaataacaa 5171776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 126 - 272
Target Start/End: Original strand, 32163774 - 32163920
Alignment:
Q  126 acgcagttggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatc 225  Q
    |||||||  |||||| |||||||  || ||||||||||||||||||| ||| ||||||| ||||| ||||| |||| |||||||||||  |||||||||     
T  32163774 acgcagtcagaagcgaaggctagaaagcgttaaacctagattgaaaagaaataagtttgtaagcgtcaaac-ttgtgaaaatatggtttcggaatccatg 32163872  T
Q  226 agaaattgagaaaac-tctctaaagtattattgaagtaataaaagttt 272  Q
    | ||||||||||||| |||||||| ||||||||||  |||||||||||    
T  32163873 ataaattgagaaaacttctctaaaatattattgaatgaataaaagttt 32163920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 126 - 271
Target Start/End: Complemental strand, 21772460 - 21772316
Alignment:
Q  126 acgcagttggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatc 225  Q
    ||||||||||||||||||| |||| |  | ||||| ||||||||||| |||||||||||||||||||||||||  | |||||| |||||  |||||||||    
T  21772460 acgcagttggaagcgtaggttagccaacgctaaacttagattgaaaa-aaacaagtttgcaagcgacaaactta-tgaaaatagggttcctgaatccatc 21772363  T
Q  226 agaaattgagaaaactctc-taaagtattattgaagtaataaaagtt 271  Q
    | ||||||||||||||||| | || ||||||||||  ||||||||||    
T  21772362 acaaattgagaaaactctcttgaaatattattgaacgaataaaagtt 21772316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 128 - 269
Target Start/End: Original strand, 32161974 - 32162115
Alignment:
Q  128 gcagttggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcag 227  Q
    ||||| ||||| | |||| ||| || ||||||||||||| ||||| ||||||||||||||| ||||||| |||| |||||| ||||| |||||||| |||    
T  32161974 gcagtaggaagtgaaggcaagcaagcgttaaacctagatcgaaaagaaacaagtttgcaagtgacaaac-ttgtgaaaatagggttcaggaatccaccag 32162072  T
Q  228 aaattgagaaaac-tctctaaagtattattgaagtaataaaag 269  Q
    ||| ||||||||| |||||||| ||||||||||  ||||||||    
T  32162073 aaactgagaaaacttctctaaaatattattgaataaataaaag 32162115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 134 - 271
Target Start/End: Complemental strand, 36647370 - 36647234
Alignment:
Q  134 ggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattg 233  Q
    |||||||||||||||| || | ||||||| ||||||||| || |||||||||||||||||||| |||| |||||| |||| ||||||||| || ||| ||    
T  36647370 ggaagcgtaggctagcaagcgctaaacctcgattgaaaagaa-caagtttgcaagcgacaaac-ttgtgaaaatagggttttggaatccaccaaaaaatg 36647273  T
Q  234 a-gaaaactctctaaagtattattgaagtaataaaagtt 271  Q
    | |||||  |||||||||||||||||   ||||||||||    
T  36647272 aggaaaaaactctaaagtattattgattgaataaaagtt 36647234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 154 - 243
Target Start/End: Complemental strand, 23456633 - 23456545
Alignment:
Q  154 gttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgagaaaactct 243  Q
    |||||||||| |||||||| |||||||||||||||||||||||||| | ||||||  ||||||||||||| | |||| ||||||||||||    
T  23456633 gttaaacctatattgaaaagaaacaagtttgcaagcgacaaacttt-tgaaaataaagttctggaatccaccggaaactgagaaaactct 23456545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 178 - 271
Target Start/End: Complemental strand, 36649001 - 36648907
Alignment:
Q  178 aagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaatt--gagaaaactctctaaagtattattgaagtaataaaagtt 271  Q
    |||||||||||||||||| || ||||||||| |||||||||||||| ||||||||  || ||||||||||||| |||||||||   ||||||||||    
T  36649001 aagtttgcaagcgacaaaatt-gtaaaaatagggttctggaatccaccagaaattaagaaaaaactctctaaaatattattgattgaataaaagtt 36648907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 162 - 271
Target Start/End: Complemental strand, 4184979 - 4184870
Alignment:
Q  162 tagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgagaaaa-ctctctaaagtattattgaag 260  Q
    |||||| |||| ||| ||||| ||||||||||||||| || |||||| ||||  ||||||||  |||||||||||||| ||||||||| ||||||||||     
T  4184979 tagattcaaaagaaataagttcgcaagcgacaaactt-gtgaaaatagggtttcggaatccacgagaaattgagaaaaactctctaaaatattattgaat 4184881  T
Q  261 taataaaagtt 271  Q
     ||||||||||    
T  4184880 gaataaaagtt 4184870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 134 - 271
Target Start/End: Complemental strand, 12966554 - 12966418
Alignment:
Q  134 ggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattg 233  Q
    |||||| ||||||||| |  |||||| |||||||||||| || |||||| ||||||||| ||||| || |||||| ||||| | |||||| || ||||||    
T  12966554 ggaagcataggctagcaaacgttaaatctagattgaaaagaa-caagttcgcaagcgacgaactt-gtgaaaatagggttccgaaatccaccaaaaattg 12966457  T
Q  234 agaaaa-ctctctaaagtattattgaagtaataaaagtt 271  Q
    |||||| ||||||||| |||||||||   ||||||||||    
T  12966456 agaaaaactctctaaaatattattgattgaataaaagtt 12966418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 268
Target Start/End: Complemental strand, 28737910 - 28737782
Alignment:
Q  139 cgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgagaaa 238  Q
    ||||||||||| || | |||||||| |||||||| |   ||||||||||| ||||||  |||| ||||||  |||   ||||||| ||||||||||||||    
T  28737910 cgtaggctagcaagcgctaaacctaaattgaaaagagt-aagtttgcaagagacaaaacttgtgaaaatagagtttcagaatccaacagaaattgagaaa 28737812  T
Q  239 actctctaaagtattattgaagtaataaaa 268  Q
    |||||||||| ||||||||||  |||||||    
T  28737811 actctctaaaatattattgaatgaataaaa 28737782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 137 - 271
Target Start/End: Complemental strand, 36615285 - 36615150
Alignment:
Q  137 agcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaatt--ga 234  Q
    |||||||||||||  | |||||||||| ||| ||||  |   ||||||||||||||||| || ||||||||| ||||| |||||||| ||||||||  ||    
T  36615285 agcgtaggctagcatgcgttaaacctatattaaaaaagatttagtttgcaagcgacaaaatt-gtaaaaataaggttccggaatccaccagaaattaaga 36615187  T
Q  235 gaaaactctctaaagtattattgaagtaataaaagtt 271  Q
     ||||||||||||| |||||||||   ||||||||||    
T  36615186 aaaaactctctaaaatattattgattgaataaaagtt 36615150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 314
Target Start/End: Original strand, 280076 - 280193
Alignment:
Q  197 tttgtaaaaatatggttctggaatccatcagaaattgagaaaactctctaaagtattattgaagtaataaaagtttttattaggctacaaatgttaagtt 296  Q
    ||||| |||||| |||||| |||||||||  |||||||||||||||| |||| ||| |||||| |||||||  || ||  ||| |||||| ||||||| |    
T  280076 tttgtgaaaataaggttcttgaatccatcgaaaattgagaaaactctttaaaatatcattgaattaataaatattcttcatagactacaattgttaagct 280175  T
Q  297 caaatagagaaataacaa 314  Q
     | |||| ||||||||||    
T  280176 tagatagggaaataacaa 280193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 126 - 286
Target Start/End: Complemental strand, 8294664 - 8294507
Alignment:
Q  126 acgcagttggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatc 225  Q
    ||||||| |||||| ||||||||| || | ||||| ||||| ||| |  |||| ||||||||||||||||| |||||||||||  |||    |||||| |    
T  8294664 acgcagtcggaagcataggctagcaagtgctaaacttagatagaagaagaacacgtttgcaagcgacaaac-ttgtaaaaatagtgtttcataatccacc 8294566  T
Q  226 agaaattgagaaaactctctaaagtattattgaagtaataaaagtttttattaggctacaa 286  Q
    ||||||||| ||||  ||||||| ||||||| |   ||||||||||| | |||||||||||    
T  8294565 agaaattgaaaaaa--ctctaaaatattattcattgaataaaagtttatcttaggctacaa 8294507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 134 - 270
Target Start/End: Complemental strand, 15129467 - 15129332
Alignment:
Q  134 ggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcag-aaatt 232  Q
    |||||||||||||||| || | ||||||||||| |||||  |||||||| ||||||||||||| |||| |||||| |||||  ||||| | ||| ||||     
T  15129467 ggaagcgtaggctagcaagcgctaaacctagatagaaaa-gaacaagttcgcaagcgacaaac-ttgtgaaaatagggttccagaatcaaccagaaaata 15129370  T
Q  233 gagaaaactctctaaagtattattgaagtaataaaagt 270  Q
    ||||||| ||||| || |||||| || | |||||||||    
T  15129369 gagaaaagtctctgaaatattatagatgaaataaaagt 15129332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 28737991 - 28737919
Alignment:
Q  126 acgcagttggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaacttt 199  Q
    ||||||| |||||||||| ||||| || | |||||||||||||||||  | |||||||||||||||||||||||    
T  28737991 acgcagtcggaagcgtagtctagcaagtgctaaacctagattgaaaa-gagcaagtttgcaagcgacaaacttt 28737919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 245
Target Start/End: Original strand, 12123950 - 12124017
Alignment:
Q  177 caagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgagaaaactctct 245  Q
    |||||||||||||||||||| | || |||||||||||| |||||||| || |||||||||||| |||||    
T  12123950 caagtttgcaagcgacaaacct-gtgaaaatatggttcaggaatccaccaaaaattgagaaaaatctct 12124017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 29715206 - 29715168
Alignment:
Q  156 taaacctagattgaaaataaacaagtttgcaagcgacaa 194  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  29715206 taaacctagattgaaaataaaaaagtttgcaagcgacaa 29715168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 271
Target Start/End: Complemental strand, 33053473 - 33053359
Alignment:
Q  156 taaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgagaaaactctctaaagtattat 255  Q
    |||| ||||||||||||  || ||||||| |||||||||| ||  | |||||  |||| || |||| | |||||||||||||||  ||||||| ||||||    
T  33053473 taaatctagattgaaaaagaataagtttgtaagcgacaaaatta-tgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaatattat 33053375  T
Q  256 tgaagtaataaaagtt 271  Q
    ||||  ||||||||||    
T  33053374 tgaatgaataaaagtt 33053359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 1218389 - 1218434
Alignment:
Q  226 agaaattgagaaaactctctaaagtattattgaagtaataaaagtt 271  Q
    |||||||||||||| |||||||| ||||||||||  ||||||||||    
T  1218389 agaaattgagaaaattctctaaaatattattgaatgaataaaagtt 1218434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 33655705 - 33655642
Alignment:
Q  134 ggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactt 198  Q
    ||||| ||||| |||| || | ||||||||||| ||||| | |||||||||||||||||||||||    
T  33655705 ggaagtgtaggttagcaagcgctaaacctagatagaaaa-atacaagtttgcaagcgacaaactt 33655642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 136 - 271
Target Start/End: Complemental strand, 12944192 - 12944058
Alignment:
Q  136 aagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgag 235  Q
    |||||||||||||| || | |||| |||||||||||| |||||||||||||| |||||||||| ||||||||| |||||||||||||| |||||||||||    
T  12944192 aagcgtaggctagcaagcgctaaatctagattgaaaagaaacaagtttgcaaacgacaaactt-gtaaaaatagggttctggaatccaccagaaattgag 12944094  T
Q  236 aaaactctctaaagtattattgaagtaataaaagtt 271  Q
    ||||||||||||| || |||||||  ||||||||||    
T  12944093 aaaactctctaaaataatattgaatgaataaaagtt 12944058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 126 - 314
Target Start/End: Complemental strand, 10925823 - 10925638
Alignment:
Q  126 acgcagttggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatc 225  Q
    ||||||| ||||||| |||||||| || | |||||||| ||||||||   |||| |||||||||||||||||| |||||||||||||||||||||||| |    
T  10925823 acgcagtcggaagcggaggctagcaagcgctaaacctaaattgaaaa---acaattttgcaagcgacaaactt-gtaaaaatatggttctggaatccacc 10925728  T
Q  226 agaaattgagaaaactctctaaagtattattgaagtaataaaagttt-ttattaggctacaaatgttaagttcaaatagagaaataacaa 314  Q
      ||||||| ||||||||||||| ||||||||||  |||||||||||  | ||| ||||||| |||||| || |||||| ||||||||||    
T  10925727 gaaaattgaaaaaactctctaaaatattattgaatgaataaaagtttcctcttaagctacaactgttaaatttaaatagggaaataacaa 10925638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 126 - 314
Target Start/End: Complemental strand, 10927278 - 10927092
Alignment:
Q  126 acgcagttggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatc 225  Q
    |||||||||||| || |||||||| |  | |||||||||| ||||||  |||||||||||||||||||||||| || ||||   ||||| |||||||| |    
T  10927278 acgcagttggaaacggaggctagcaaacgctaaacctagactgaaaaagaacaagtttgcaagcgacaaactt-gtgaaaag--ggttccggaatccacc 10927182  T
Q  226 agaaattgagaaaactctctaaagtattattgaagtaataaaagtt-tttattaggctacaaatgttaagttcaaatagagaaataacaa 314  Q
    ||||||||||||||||||||||| ||||||| ||  |||||||||| | | ||||||||||| ||||||| | |||||| ||||||||||    
T  10927181 agaaattgagaaaactctctaaaatattatttaatgaataaaagttgtctcttaggctacaattgttaagattaaatagggaaataacaa 10927092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 134 - 271
Target Start/End: Original strand, 28660757 - 28660894
Alignment:
Q  134 ggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcag-aaatt 232  Q
    ||||||||||| |||| |  | ||||||||||| || || ||||||||||||||||||||||| |||| |||||| ||||| | |||||| ||| |||||    
T  28660757 ggaagcgtaggatagcaaacgctaaacctagatagataagaaacaagtttgcaagcgacaaac-ttgtgaaaatagggttccgaaatccaccagaaaatt 28660855  T
Q  233 gagaaaactctctaaagtattattgaagtaataaaagtt 271  Q
     ||||||||||||||| |||||||||| |||||||||||    
T  28660856 tagaaaactctctaaaatattattgaattaataaaagtt 28660894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 126 - 271
Target Start/End: Complemental strand, 8221574 - 8221430
Alignment:
Q  126 acgcagttggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatc 225  Q
    ||||||| ||| |||||||||||| || | |||||| |||||||| | | |||||||||||| ||||||||||  | |||||| |||||||||||||| |    
T  8221574 acgcagtcggatgcgtaggctagctagtgctaaaccaagattgaatagagacaagtttgcaaacgacaaactta-tgaaaatagggttctggaatccacc 8221476  T
Q  226 agaaattgagaaaactctctaaagtattattgaagtaataaaagtt 271  Q
    |||||||||||||||||| | || ||| ||||||  ||||||||||    
T  8221475 agaaattgagaaaactctttgaaatatcattgaatgaataaaagtt 8221430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 156 - 268
Target Start/End: Complemental strand, 50713769 - 50713658
Alignment:
Q  156 taaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgagaaaactctctaaagtattat 255  Q
    ||||||||||||||||| | ||||||| ||| ||||||||||| || |||||| ||||  |||||||| |||||||||||||||||||| ||| ||||||    
T  50713769 taaacctagattgaaaagagacaagttcgcaggcgacaaactt-gtgaaaatagggtttcggaatccaccagaaattgagaaaactctcaaaaatattat 50713671  T
Q  256 tgaagtaataaaa 268  Q
    ||||  |||||||    
T  50713670 tgaatgaataaaa 50713658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 174 - 314
Target Start/End: Complemental strand, 31915588 - 31915447
Alignment:
Q  174 aaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgag-aaaactctctaaagtattattgaagtaataaaagtt- 271  Q
    ||||||||||||||||||||||||| || |||||| ||||| |||||||| ||||||||||| ||||||||||||| || || |||   ||||||||||     
T  31915588 aaacaagtttgcaagcgacaaactt-gtgaaaatagggttccggaatccaccagaaattgagaaaaactctctaaaatactactgattgaataaaagtta 31915490  T
Q  272 tttattaggctacaaatgttaagttcaaatagagaaataacaa 314  Q
    | | ||||||||||  ||||||| | |||||| ||||||||||    
T  31915489 tctcttaggctacatctgttaagcttaaatagggaaataacaa 31915447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 134 - 271
Target Start/End: Complemental strand, 239765 - 239629
Alignment:
Q  134 ggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattg 233  Q
    |||||||||||||||| |||| ||||| || ||| |||| ||||||||| ||||||| |||| ||| | |||||| ||||| |||||||| | ||||||     
T  239765 ggaagcgtaggctagcaagggctaaacttatattaaaaagaaacaagttagcaagcgtcaaa-tttatgaaaatagggttccggaatccaactgaaatta 239667  T
Q  234 agaaaactctctaaagtattattgaagtaataaaagtt 271  Q
    ||||||| ||||||| ||||||| ||  ||||||||||    
T  239666 agaaaaccctctaaaatattattaaatgaataaaagtt 239629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 126 - 259
Target Start/End: Complemental strand, 10928375 - 10928243
Alignment:
Q  126 acgcagttggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatc 225  Q
    ||||||| |||||||||||||||| || | |||||||||||| |||| | | ||||||| ||| ||||||| |||| |||||| ||||  ||||||||      
T  10928375 acgcagtaggaagcgtaggctagcaagtgctaaacctagattaaaaagatataagtttgtaagtgacaaac-ttgtgaaaataaggtttcggaatccact 10928277  T
Q  226 agaaattgagaaaactctctaaagtattattgaa 259  Q
    | ||||||||||||||||||||| || |||||||    
T  10928276 ataaattgagaaaactctctaaaatactattgaa 10928243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 154 - 294
Target Start/End: Original strand, 9194974 - 9195113
Alignment:
Q  154 gttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgagaaaactctctaaagtatt 253  Q
    |||||||||||||||||   ||||||||||||||||||||||| | ||   |||| |||||   |||||| || ||||||| ||||||||||||||||||    
T  9194974 gttaaacctagattgaatg-aaacaagtttgcaagcgacaaacat-gtgttaatagggttcaataatccaccaaaaattgaaaaaactctctaaagtatt 9195071  T
Q  254 attgaagtaataaaagt-ttttattaggctacaaatgttaag 294  Q
    ||||||  |||||||||  | | |||||||||||||||||||    
T  9195072 attgaatgaataaaagtcgtctcttaggctacaaatgttaag 9195113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 134 - 258
Target Start/End: Complemental strand, 23987654 - 23987527
Alignment:
Q  134 ggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatat----ggttctggaatccatcagaa 229  Q
    ||||||||||| |||| || | | ||||||||| |||||  ||||| ||||||| |||||||||| || |||||||    ||||| |||||||| |||||    
T  23987654 ggaagcgtagggtagcaagcgctgaacctagatagaaaaagaacaactttgcaaacgacaaactt-gtgaaaatatagaaggttccggaatccaccagaa 23987556  T
Q  230 attgagaaaactctctaaagtattattga 258  Q
    ||||||| ||||||||||| |||||||||    
T  23987555 attgagataactctctaaaatattattga 23987527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 129 - 272
Target Start/End: Original strand, 28661074 - 28661215
Alignment:
Q  129 cagttggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcaga 228  Q
    |||| |||||||||||||||| || | |||||||| ||||| || |||||||||||||||||| ||||  |||||||||| ||||    |||||| || |    
T  28661074 cagtcggaagcgtaggctagcaagtgctaaacctaaattgataagaaacaagtttgcaagcgaaaaac-ctgtaaaaatagggtttcaaaatcca-caaa 28661171  T
Q  229 aattgagaaaactctctaaagtattattgaagtaataaaagttt 272  Q
    || ||||||||||||||||| |||| |||||   ||||||||||    
T  28661172 aaatgagaaaactctctaaaatattgttgaacggataaaagttt 28661215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 134 - 271
Target Start/End: Complemental strand, 9031095 - 9030958
Alignment:
Q  134 ggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattg 233  Q
    |||||||||||||||| ||   |||||||| ||||||||  || |||||||||||| | |||| || | |||||| |||| | ||||||| || ||||||    
T  9031095 ggaagcgtaggctagcaagtactaaacctatattgaaaaggaataagtttgcaagcaataaac-ttatgaaaatagggttgtagaatccaccataaattg 9030997  T
Q  234 agaaaac-tctctaaagtattattgaagtaataaaagtt 271  Q
    ||||||| |||||||| ||||||||||  ||||||||||    
T  9030996 agaaaacttctctaaaatattattgaatgaataaaagtt 9030958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 294
Target Start/End: Complemental strand, 43681535 - 43681375
Alignment:
Q  139 cgtaggctagcgagggttaaacctagattgaaaataaa-caagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgagaa 237  Q
    |||| |||||| || | ||||||||||||||||| ||| ||||||||||||||||||| ||||| ||||||  | ||  ||||| | |||||||| ||||    
T  43681535 cgtatgctagcaagcgctaaacctagattgaaaaaaaaacaagtttgcaagcgacaaa-tttgtgaaaatagagatccagaatctaccagaaattaagaa 43681437  T
Q  238 aac-tctc-taaagtattattgaagtaataaaagtt---tttattaggctacaaatgttaag 294  Q
    ||| |||| |||| ||||||||||  ||||||||||   | ||||||||||||| |||||||    
T  43681436 aacttctcttaaaatattattgaatgaataaaagttacatctattaggctacaactgttaag 43681375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 126 - 232
Target Start/End: Complemental strand, 26981596 - 26981490
Alignment:
Q  126 acgcagttggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaa--atatggttctggaatcca 223  Q
    ||||||| ||||||||||| || | |||| |||| |||||||| ||| |||||||||||||||||| |||| ||||||||  ||||||||  | ||||||    
T  26981596 acgcagtcggaagcgtaggttatctagggctaaatctagattg-aaagaaacaagtttgcaagcgaaaaac-ttgtaaaaatatatggtttcgaaatcca 26981499  T
Q  224 tcagaaatt 232  Q
    |||||||||    
T  26981498 tcagaaatt 26981490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 258
Target Start/End: Original strand, 33152756 - 33152855
Alignment:
Q  160 cctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaatt--gagaaaactctctaaagtattattg 257  Q
    ||||||||||||| ||||||||||||||||||||||| ||   | |||| ||||| |||||||| ||||||||  || |||||||| |||| ||||||||    
T  33152756 cctagattgaaaagaaacaagtttgcaagcgacaaac-ttacgacaatagggttccggaatccaccagaaattaagaaaaaactctataaaatattattg 33152854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 231
Target Start/End: Complemental strand, 31913453 - 31913359
Alignment:
Q  135 gaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaat 231  Q
    ||||| ||||||||| || | ||||||||| ||||||  ||||||||||||||||||||||| ||||||||||| | ||| | |||||| |||||||    
T  31913453 gaagcataggctagcaagcgctaaacctaggttgaaag-aaacaagtttgcaagcgacaaac-ttgtaaaaataggtttccgaaatccaccagaaat 31913359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 294
Target Start/End: Original strand, 9199317 - 9199387
Alignment:
Q  226 agaaattgagaaaactctctaaagtattattgaagtaataaaagttt--ttattaggctacaaatgttaag 294  Q
    ||||||||| ||||||||||||| ||||||||||  |||||||||||   | |||||||||||||||||||    
T  9199317 agaaattgaaaaaactctctaaaatattattgaaagaataaaagtttgcctcttaggctacaaatgttaag 9199387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 259
Target Start/End: Original strand, 8965854 - 8965910
Alignment:
Q  203 aaaatatggttctggaatccatcagaaattgagaaaactctctaaagtattattgaa 259  Q
    |||||| ||||||| ||||||||||||||||||||||| || | || ||||||||||    
T  8965854 aaaatagggttctgaaatccatcagaaattgagaaaacactatgaaatattattgaa 8965910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 198
Target Start/End: Original strand, 40058113 - 40058177
Alignment:
Q  134 ggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactt 198  Q
    |||||||||||||||| ||   |||||||| || ||||| ||| |||||||||||||||||||||    
T  40058113 ggaagcgtaggctagcaagcagtaaacctaaatagaaaagaaataagtttgcaagcgacaaactt 40058177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 259
Target Start/End: Original strand, 28659577 - 28659702
Alignment:
Q  135 gaagcgtaggctagcgagggttaaacctagattga--aaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaatt 232  Q
    ||||||||||||||| |  | |||||||| |||||  ||| ||||||||||||||| || |||||| || |||||  | ||| |  |||||  |||||||    
T  28659577 gaagcgtaggctagcaaatgctaaacctatattgataaaaaaaacaagtttgcaagggataaactt-gtgaaaattggattccgatatccactagaaatt 28659675  T
Q  233 gagaaaactctctaaagtattattgaa 259  Q
     | ||||||||||||||||||||||||    
T  28659676 aaaaaaactctctaaagtattattgaa 28659702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 8931275 - 8931234
Alignment:
Q  156 taaacctagattgaaaataaacaagtttgcaagcgacaaactt 198  Q
    ||||||||||||||||| |||||||||||||||||| ||||||    
T  8931275 taaacctagattgaaaa-aaacaagtttgcaagcgataaactt 8931234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 259
Target Start/End: Original strand, 8967806 - 8967939
Alignment:
Q  126 acgcagttggaagcgtaggctagcgagggttaaacctagattgaaaata-aacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccat 224  Q
    |||||||  |||||| ||||| || || ||||||||||||| || || | |||||||||||||  ||||||| |  | |||||| |||||  |||||||     
T  8967806 acgcagtccgaagcgaaggctcgcaagcgttaaacctagatagagaaaagaacaagtttgcaaatgacaaaccta-tgaaaatagggttccagaatccac 8967904  T
Q  225 cagaaattgagaaaactctctaaagtattattgaa 259  Q
    || |||||| ||||||||||| || ||||||||||    
T  8967905 caaaaattgtgaaaactctctgaaatattattgaa 8967939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 256
Target Start/End: Complemental strand, 21903807 - 21903709
Alignment:
Q  156 taaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgagaaaactctctaaagtattat 255  Q
    ||||| ||||||||||| ||| ||||||| | |||||||   |||| |||||| ||||  ||||||||  | |||||||||||||| |||||| ||||||    
T  21903807 taaacttagattgaaaagaaataagtttgtaggcgacaac--ttgtgaaaatagggtttcggaatccacaaaaaattgagaaaactttctaaactattat 21903710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 314
Target Start/End: Complemental strand, 10928065 - 10928005
Alignment:
Q  255 ttgaagtaataaaagtttt-tattaggctacaaatgttaagttcaaatagagaaataacaa 314  Q
    |||||| |||||||||| | | ||||||||||| ||||||| | |||||||||||||||||    
T  10928065 ttgaaggaataaaagttgtctcttaggctacaattgttaagcttaaatagagaaataacaa 10928005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 126 - 271
Target Start/End: Original strand, 13991382 - 13991526
Alignment:
Q  126 acgcagttggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatc 225  Q
    ||||||| |||||||||||||||| || | |||| |||||||||||| |||||||||||||||||||||||  ||  |||||| |||||||||||||| |    
T  13991382 acgcagtcggaagcgtaggctagcaagcgctaaatctagattgaaaagaaacaagtttgcaagcgacaaac-atgcgaaaataaggttctggaatccacc 13991480  T
Q  226 agaaattgagaaaactctctaaagtattattgaagtaataaaagtt 271  Q
    |||| |||||||||||||||||| ||||||||||  ||||||||||    
T  13991481 agaatttgagaaaactctctaaaatattattgaatgaataaaagtt 13991526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 126 - 272
Target Start/End: Complemental strand, 7634166 - 7634021
Alignment:
Q  126 acgcagttggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatc 225  Q
    |||||||  |||||||| |||||  || |||||||||||||||||||  ||||||||||||| ||| |||||| ||  |||||  ||||||||||||| |    
T  7634166 acgcagtcagaagcgtatgctagtaagcgttaaacctagattgaaaaggaacaagtttgcaaacgataaactt-gtggaaatagagttctggaatccacc 7634068  T
Q  226 agaaattgagaaaactctctaaagtattattgaagtaataaaagttt 272  Q
    ||||||||||||||||||||||| ||||||||||  |||||||||||    
T  7634067 agaaattgagaaaactctctaaaatattattgaatgaataaaagttt 7634021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 154 - 271
Target Start/End: Original strand, 38888021 - 38888137
Alignment:
Q  154 gttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgagaaaactctctaaagtatt 253  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||| |||||| ||||  ||||||||| |||||||||||||| |||||||| |||     
T  38888021 gttaaacctagattgaaaataaacaaatttgcaagcgacaaac-ttgtgaaaatagggtttcggaatccattagaaattgagaaaattctctaaaatatg 38888119  T
Q  254 attgaagtaataaaagtt 271  Q
     |||||  ||||||||||    
T  38888120 gttgaatgaataaaagtt 38888137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 173 - 270
Target Start/End: Original strand, 13990727 - 13990823
Alignment:
Q  173 taaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgagaaaactctctaaagtattattgaagtaataaaagt 270  Q
    ||||||||||||||||  |||||||| || |||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||  |||||||||    
T  13990727 taaacaagtttgcaagtaacaaactt-gtgaaaatagggttctggaatccatcagaaattgaaaaaactctctaaaatattattgaatgaataaaagt 13990823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 156 - 259
Target Start/End: Original strand, 18689554 - 18689656
Alignment:
Q  156 taaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgagaaaactctctaaagtattat 255  Q
    ||||||||||||||||| ||| ||||||||| ||||||||||| ||||||||| ||||   ||||||| ||||||||||||||||||| |||| ||||||    
T  18689554 taaacctagattgaaaagaaaaaagtttgcatgcgacaaactt-gtaaaaatagggttgcagaatccaccagaaattgagaaaactctataaaatattat 18689652  T
Q  256 tgaa 259  Q
    ||||    
T  18689653 tgaa 18689656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 157 - 268
Target Start/End: Complemental strand, 10494958 - 10494848
Alignment:
Q  157 aaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgagaaaactctctaaagtattatt 256  Q
    |||||||||| ||||| ||||||||||||||| ||||||| | || ||||||  |||| ||||| || |||||||||||||||||||||||| |||||||    
T  10494958 aaacctagatggaaaagaaacaagtttgcaagtgacaaacct-gtgaaaatagagttccggaattcaccagaaattgagaaaactctctaaaatattatt 10494860  T
Q  257 gaagtaataaaa 268  Q
    |||  |||||||    
T  10494859 gaatgaataaaa 10494848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 135 - 259
Target Start/End: Original strand, 18657054 - 18657177
Alignment:
Q  135 gaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattga 234  Q
    |||||||| ||||| |||   ||||||||||||||||| ||| ||||||||| ||||||||| ||||||||||| | ||   ||||||| | ||||||||    
T  18657054 gaagcgtaagctagagagcactaaacctagattgaaaagaaaaaagtttgcatgcgacaaac-ttgtaaaaataggatttcagaatccaccggaaattga 18657152  T
Q  235 gaaaactctctaaagtattattgaa 259  Q
    ||||||||| |||| ||||||||||    
T  18657153 gaaaactctataaaatattattgaa 18657177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 174 - 314
Target Start/End: Complemental strand, 9260611 - 9260470
Alignment:
Q  174 aaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgagaaaactctctaaagtattattgaagtaataaaagtt-- 271  Q
    |||||||||||||| |||||||||| |  |||||| ||||   ||||||| ||||||||||||||||| |||||| ||| ||||||  ||||| ||||      
T  9260611 aaacaagtttgcaaacgacaaactt-gcgaaaatagggtttcagaatccaccagaaattgagaaaactatctaaaatataattgaatgaataatagtttg 9260513  T
Q  272 tttattaggctacaaatgttaagttcaaatagagaaataacaa 314  Q
    ||| ||| ||||||  ||||||||| ||||||| |||||||||    
T  9260512 tttcttaagctacacctgttaagtttaaatagacaaataacaa 9260470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 271
Target Start/End: Original strand, 22486792 - 22486921
Alignment:
Q  139 cgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgagaaa 238  Q
    ||||||||||| || | |||||||| || |||||  | ||||||||||||||||||   |||| |||||| ||||| |||||||| ||||||||||||||    
T  22486792 cgtaggctagcaagcgctaaacctatatagaaaaagaccaagtttgcaagcgacaac--ttgtgaaaata-ggttccggaatccaccagaaattgagaaa 22486888  T
Q  239 actctctaaagtattattgaagtaataaaagtt 271  Q
    ||||||| ||  ||||| |||  ||||||||||    
T  22486889 actctctgaaacattatggaataaataaaagtt 22486921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 268
Target Start/End: Original strand, 21433596 - 21433707
Alignment:
Q  156 taaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgagaaaactctctaaagtattat 255  Q
    ||||||||||| |||||  ||||| || |||||||||||||||  | |||||| |||||  |||| ||||| |||||||||||| |||||||| ||||||    
T  21433596 taaacctagatagaaaaagaacaaattcgcaagcgacaaactta-tgaaaatagggttccagaattcatcataaattgagaaaattctctaaaatattat 21433694  T
Q  256 tgaagtaataaaa 268  Q
    ||||  |||||||    
T  21433695 tgaatgaataaaa 21433707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 271
Target Start/End: Original strand, 3765240 - 3765354
Alignment:
Q  156 taaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgagaaaactctctaaagtattat 255  Q
    |||||||| |||||||| |||||| |||  |||||||| |||| |||||| || | || |||||| || || ||||||||||||||||| ||| ||||||    
T  3765240 taaacctatattgaaaagaaacaattttataagcgacagactt-gtaaaagtaggattttggaattcaccaaaaattgagaaaactctcaaaaatattat 3765338  T
Q  256 tgaagtaataaaagtt 271  Q
    ||||  ||||||||||    
T  3765339 tgaataaataaaagtt 3765354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 243
Target Start/End: Original strand, 7724093 - 7724193
Alignment:
Q  139 cgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgagaaa 238  Q
    |||| |||||| || | |||||||| |||||||| || ||||||||| |||||||||||     |||||| ||||| |||||||| ||||||||||||||    
T  7724093 cgtatgctagcaagtgctaaacctatattgaaaagaagcaagtttgcgagcgacaaactg----aaaatagggttccggaatccaccagaaattgagaaa 7724188  T
Q  239 actct 243  Q
    |||||    
T  7724189 actct 7724193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 134 - 243
Target Start/End: Original strand, 17254894 - 17255002
Alignment:
Q  134 ggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattg 233  Q
    |||||||||||||||| |  | ||||| ||||||||| || ||||| ||| |||||||||||| |||| ||||||  |||||| |||||   ||||||||    
T  17254894 ggaagcgtaggctagcaaacgctaaacttagattgaagatgaacaaattttcaagcgacaaac-ttgtgaaaatagagttctgaaatcccctagaaattg 17254992  T
Q  234 agaaaactct 243  Q
    ||||||||||    
T  17254993 agaaaactct 17255002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 268
Target Start/End: Complemental strand, 40206226 - 40206093
Alignment:
Q  134 ggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattg 233  Q
    |||||||||||||||| || | |||| ||| |||||||  | ||||||| ||||||||||||| |||| ||||||  |||  ||||| || |||||||||    
T  40206226 ggaagcgtaggctagcaagcgctaaatctaaattgaaag-agacaagttcgcaagcgacaaac-ttgtgaaaatagtgtttcggaattcaccagaaattg 40206129  T
Q  234 ag-aaaactctctaaagtattattgaagtaataaaa 268  Q
    || |||| |||||||| ||||||||||  |||||||    
T  40206128 agaaaaattctctaaaatattattgaatgaataaaa 40206093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 188
Target Start/End: Original strand, 22486714 - 22486776
Alignment:
Q  126 acgcagttggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaag 188  Q
    ||||||||||||||||| | |||| | |||||||||||||| |||||  ||||||||||||||    
T  22486714 acgcagttggaagcgtaagttagcaaaggttaaacctagatagaaaaagaacaagtttgcaag 22486776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 248
Target Start/End: Original strand, 50519223 - 50519269
Alignment:
Q  202 aaaaatatggttctggaatccatcagaaattgagaaaactctctaaa 248  Q
    ||||||| ||||||||||||||  |||||||||||||||||||||||    
T  50519223 aaaaatagggttctggaatccactagaaattgagaaaactctctaaa 50519269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 239
Target Start/End: Complemental strand, 19935563 - 19935461
Alignment:
Q  135 gaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattga 234  Q
    ||||||||||||||| || | |||||  |||| ||||| ||| || ||||||||||||||||||  | |||||| |||| |||||| ||||| |||||||    
T  19935563 gaagcgtaggctagccagcgctaaactcagatagaaaa-aaataaatttgcaagcgacaaactta-tgaaaatagggttatggaattcatcaaaaattga 19935466  T
Q  235 gaaaa 239  Q
    |||||    
T  19935465 gaaaa 19935461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 248
Target Start/End: Original strand, 53477245 - 53477338
Alignment:
Q  156 taaacctagattga--aaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgagaaaactctctaaa 248  Q
    ||||||||||| ||  ||| |||||||||| |||||| ||||| | || |||||  |||| | ||||||| ||||||||||||||||||||||||    
T  53477245 taaacctagatagagtaaaaaaacaagtttacaagcgtcaaacct-gtgaaaatggggttttagaatccaccagaaattgagaaaactctctaaa 53477338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 54700630 - 54700672
Alignment:
Q  156 taaacctagattgaaaataaacaagtttgcaagcgacaaactt 198  Q
    |||||||| |||||||| ||||||||||||||| |||||||||    
T  54700630 taaacctatattgaaaagaaacaagtttgcaagtgacaaactt 54700672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 257
Target Start/End: Complemental strand, 15848460 - 15848361
Alignment:
Q  156 taaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgagaaaactctctaaagtattat 255  Q
    |||| |||||||||||| ||||||||| ||||| |||||| || || |||| |  |||| | |||||| || ||||||||||||||||||||| || |||    
T  15848460 taaatctagattgaaaagaaacaagtt-gcaagtgacaaaatt-gtgaaaagagagttccgaaatccaccaaaaattgagaaaactctctaaaatactat 15848363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 198
Target Start/End: Original strand, 50515906 - 50515970
Alignment:
Q  134 ggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactt 198  Q
    ||||||| |||||||| || | || || |||| ||| || |||||||||||||||||||||||||    
T  50515906 ggaagcggaggctagcaagcgctacacttagactgagaagaaacaagtttgcaagcgacaaactt 50515970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 135 - 314
Target Start/End: Complemental strand, 9780 - 9601
Alignment:
Q  135 gaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaact-ttgtaaaaatatggttctggaatccatcagaaattg 233  Q
    |||||||| |||||| || | ||||||||||||||||| || ||||||| |||||||| |||  |||| |||||| ||||| | |||||| |||||||||    
T  9780 gaagcgtatgctagcaagcggtaaacctagattgaaaagaa-caagtttccaagcgactaacacttgtgaaaatagggttccgaaatccaccagaaattg 9682  T
Q  234 agaaaactctctaaagtattattgaagtaataaaagtttttattaggctacaaatgttaagttcaaatagagaaataacaa 314  Q
    |||||||||||| || ||||||||||  ||||||||||| |  ||| ||| || ||||||| | |||||| ||||||||||    
T  9681 agaaaactctctgaaatattattgaatgaataaaagtttctcctagactataactgttaagcttaaatagggaaataacaa 9601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 144 - 314
Target Start/End: Complemental strand, 1725 - 1555
Alignment:
Q  144 gctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgag-aaaactc 242  Q
    |||||| || ||||||||||||||||||  |||||||||||||| |||||||||| || ||||||||||||||||||||| ||||| ||||| ||||||     
T  1725 gctagcaagcgttaaacctagattgaaag-aaacaagtttgcaaacgacaaactt-gtcaaaatatggttctggaatccaccagaatttgagaaaaacta 1628  T
Q  243 tctaaagtattattgaagtaataaaagttt-ttattaggctacaaatgttaagttcaaatagagaaataacaa 314  Q
    |||||| ||||||| ||  |||||||||||  | ||||| ||||| ||||||| | |||||  ||||||||||    
T  1627 tctaaaatattattcaatgaataaaagtttcctcttaggttacaactgttaagcttaaataaggaaataacaa 1555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 126 - 292
Target Start/End: Complemental strand, 16131 - 15967
Alignment:
Q  126 acgcagttggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatc 225  Q
    ||||||| |||| ||||||||| | || | ||||||||||| ||||| || |||||||||||| ||||||| |  | ||||||   || | ||||||| |    
T  16131 acgcagtcggaa-cgtaggctaacaagtgctaaacctagatagaaaagaa-caagtttgcaagtgacaaacatc-tgaaaatagtattatagaatccacc 16035  T
Q  226 agaaattgagaaaactctctaaagtattattgaagtaataaaagttt-ttattaggctacaaatgtta 292  Q
    ||||||| |||||||||| |||| ||||||||||  ||||||||||| ||  |||||||||| |||||    
T  16034 agaaatttagaaaactctataaaatattattgaatgaataaaagtttcttcgtaggctacaactgtta 15967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 250
Target Start/End: Complemental strand, 14932 - 14808
Alignment:
Q  126 acgcagttggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatc 225  Q
    ||||| || ||||||||||||||| || | ||||||| ||||| ||||||| ||||| |||||||| |||| |||| |||||| |  || |||||||| |    
T  14932 acgcaattagaagcgtaggctagcaagcgctaaaccttgattg-aaataaataagttggcaagcgaaaaac-ttgtgaaaataggaatccggaatccacc 14835  T
Q  226 agaaattg--agaaaactctctaaagt 250  Q
    | ||||||  | |||||||||||||||    
T  14834 aaaaattgaaaaaaaactctctaaagt 14808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 143 - 268
Target Start/End: Complemental strand, 1127323 - 1127199
Alignment:
Q  143 ggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgagaaaactc 242  Q
    |||||||||| | |||||||||||| |||| |||||||||||||||||||||| ||||| ||||||  |||  ||||| || || |||||||||||||||    
T  1127323 ggctagcgagcgctaaacctagattaaaaagaaacaagtttgcaagcgacaaa-tttgtgaaaatagtgtttcggaatacaccaaaaattgagaaaactc 1127225  T
Q  243 tctaaagtattattgaagtaataaaa 268  Q
    |||||| || |||||||  |||||||    
T  1127224 tctaaaataatattgaatgaataaaa 1127199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 135 - 248
Target Start/End: Original strand, 8048978 - 8049089
Alignment:
Q  135 gaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattga 234  Q
    ||||||||||||||| ||  |||| |||||||| |||| ||| ||||||||||| ||||||||| || |||||| || || || ||||| ||||||||||    
T  8048978 gaagcgtaggctagcaagcattaatcctagattaaaaagaaa-aagtttgcaagtgacaaactt-gtgaaaataaggctccgggatccaccagaaattga 8049075  T
Q  235 gaaaactctctaaa 248  Q
    ||||||||||||||    
T  8049076 gaaaactctctaaa 8049089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 134 - 258
Target Start/End: Original strand, 27822129 - 27822253
Alignment:
Q  134 ggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattg 233  Q
    |||||||||||||||| |  | |||||||| || |||||  ||||||||| |||||||||||| |||| |||| | ||||| | |||||| |||||||||    
T  27822129 ggaagcgtaggctagcaaacgctaaacctaaatagaaaaggaacaagttttcaagcgacaaac-ttgtgaaaacagggttccgaaatccaccagaaattg 27822227  T
Q  234 ag-aaaactctctaaagtattattga 258  Q
    || ||||||||||||| |||||||||    
T  27822228 agaaaaactctctaaaatattattga 27822253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 203 - 259
Target Start/End: Original strand, 34373865 - 34373921
Alignment:
Q  203 aaaatatggttctggaatccatcagaaattgagaaaactctctaaagtattattgaa 259  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||    
T  34373865 aaaatatggttatggaatccaccagaaattgagaaaactctctaaaatattattgaa 34373921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 158 - 268
Target Start/End: Complemental strand, 12882177 - 12882067
Alignment:
Q  158 aacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgag-aaaactctctaaagtattatt 256  Q
    |||||||||||| || | ||||||||  ||||||||||||| || |||||| ||||  |||||||| ||||||||||| ||||||||||||| |||||||    
T  12882177 aacctagattgagaagagacaagttttaaagcgacaaactt-gtgaaaatagggtttcggaatccaccagaaattgagaaaaactctctaaaatattatt 12882079  T
Q  257 gaagtaataaaa 268  Q
    |||  |||||||    
T  12882078 gaatgaataaaa 12882067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 156 - 273
Target Start/End: Complemental strand, 11658987 - 11658871
Alignment:
Q  156 taaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgagaaaa-ctctctaaagtatta 254  Q
    ||||||||||||||||| || ||| ||||||||||| |||||| || ||||||  ||| ||||||||| || |||||||||||| ||||||||| |||||    
T  11658987 taaacctagattgaaaagaa-caaatttgcaagcgataaactt-gtgaaaatagagttttggaatccaccaaaaattgagaaaaactctctaaaatatta 11658890  T
Q  255 ttgaagtaataaaagtttt 273  Q
    ||||   ||||||||||||    
T  11658889 ttgattgaataaaagtttt 11658871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 136 - 271
Target Start/End: Complemental strand, 32361443 - 32361310
Alignment:
Q  136 aagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgag 235  Q
    ||||||||  |||| || |||||| |||||||||||| |||   |||||||||||| ||| || ||||||||| ||||| |||||| |  ||||||||||    
T  32361443 aagcgtagattagcaagcgttaaatctagattgaaaagaaat--gtttgcaagcgataaaatt-gtaaaaataaggttccggaatctacgagaaattgag 32361347  T
Q  236 aaaa-ctctctaaagtattattgaagtaataaaagtt 271  Q
    |||| ||||||||| ||||||||||  ||||||||||    
T  32361346 aaaaactctctaaaatattattgaatgaataaaagtt 32361310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 296
Target Start/End: Original strand, 24443130 - 24443244
Alignment:
Q  182 ttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgagaaaactctctaaagtattattgaagtaataaaagtt-tttattagg 280  Q
    |||||||||||||||||  |||||||| |||||  ||||| | |||||||| ||||||||||||  | ||||||||||  |||||||||| | | |||||    
T  24443130 ttgcaagcgacaaactta-taaaaatagggttccagaatcaaccagaaattaagaaaactctctgcaatattattgaatgaataaaagttatctcttagg 24443228  T
Q  281 ctacaaatgttaagtt 296  Q
    |||||| |||||||||    
T  24443229 ctacaactgttaagtt 24443244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 256
Target Start/End: Original strand, 33615538 - 33615636
Alignment:
Q  157 aaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgagaaaactctctaaagtattatt 256  Q
    |||||||||| |||||  |||||||||||||||||||||| |||| |||||| ||||   |||| || || ||||||| ||||||||||||| |||||||    
T  33615538 aaacctagatagaaaaagaacaagtttgcaagcgacaaac-ttgtgaaaatagggtttcagaattcaccataaattgaaaaaactctctaaaatattatt 33615636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 156 - 230
Target Start/End: Complemental strand, 14238492 - 14238419
Alignment:
Q  156 taaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaa 230  Q
    ||||| || |||||||| ||||||||||||||||||||||| |||| |||||| ||||| ||| |||||||||||    
T  14238492 taaacataaattgaaaagaaacaagtttgcaagcgacaaac-ttgtgaaaataaggttccggagtccatcagaaa 14238419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 135 - 259
Target Start/End: Complemental strand, 22910879 - 22910755
Alignment:
Q  135 gaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattga 234  Q
    ||||||||||||||| ||  |||||||||||||||||| | |||||||||||  ||||||||||   ||| | | |||||||||| ||| || |||||||    
T  22910879 gaagcgtaggctagcaagctttaaacctagattgaaaaaagacaagtttgcattcgacaaacttatgaaataaa-ggttctggaaaccaccaaaaattga 22910781  T
Q  235 gaaaa-ctctctaaagtattattgaa 259  Q
    ||||| |||||| || || |||||||    
T  22910780 gaaaagctctctgaaataatattgaa 22910755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 22873887 - 22873828
Alignment:
Q  139 cgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactt 198  Q
    ||||||||||| || |||||||||| |||||||| | ||||||||||| |||||||||||    
T  22873887 cgtaggctagcaagtgttaaacctaaattgaaaagagacaagtttgcatgcgacaaactt 22873828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 198
Target Start/End: Complemental strand, 22889337 - 22889274
Alignment:
Q  135 gaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactt 198  Q
    ||||||||||||||| ||  |||||||||||||||||| | |||||||||||  ||||||||||    
T  22889337 gaagcgtaggctagcaagctttaaacctagattgaaaaaagacaagtttgcattcgacaaactt 22889274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 18727185 - 18727089
Alignment:
Q  134 ggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaata-tggttctggaatccatcagaaa 230  Q
    |||||||||||||||| |  | ||||||||||||||||| | ||||||| |||||||||||||||   |||||||  ||||||| |||||| ||||||    
T  18727185 ggaagcgtaggctagcaaacgctaaacctagattgaaaa-acacaagttcgcaagcgacaaacttgtgaaaaataggggttctgaaatccaccagaaa 18727089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 202 - 271
Target Start/End: Original strand, 18727923 - 18727992
Alignment:
Q  202 aaaaatatggttctggaatccatcagaaattgagaaaactctctaaagtattattgaagtaataaaagtt 271  Q
    ||||||| ||||| | |||||| |||||||||||||||||||||||| ||| |||||   ||||||||||    
T  18727923 aaaaataaggttccgaaatccaccagaaattgagaaaactctctaaaatataattgattgaataaaagtt 18727992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 243
Target Start/End: Original strand, 33215167 - 33215282
Alignment:
Q  127 cgcagttggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatca 226  Q
    |||||||||||||  || ||||| |  | |||| ||||||| |||| |||||||||||||||||||||||  ||| |||||   |||| | |||||| ||    
T  33215167 cgcagttggaagcagagactagcaaacgctaaatctagattaaaaagaaacaagtttgcaagcgacaaac-ctgtgaaaatcaagttccgtaatccacca 33215265  T
Q  227 gaaattgagaaaactct 243  Q
    |||||||| ||||||||    
T  33215266 gaaattgaaaaaactct 33215282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 294
Target Start/End: Complemental strand, 14216882 - 14216812
Alignment:
Q  226 agaaattgagaaaactctctaaagtattattgaagtaataaaagtttt--tattaggctacaaatgttaag 294  Q
    |||||||||||||||||||| || ||||||||||  |||||||||| |  | ||||||||||| |||||||    
T  14216882 agaaattgagaaaactctctgaaatattattgaataaataaaagttatcctcttaggctacaactgttaag 14216812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 29340840 - 29340881
Alignment:
Q  156 taaacctagattgaaaataaacaagtttgcaagcgacaaactt 198  Q
    ||||||||||| ||||| |||||||||||||||||||||||||    
T  29340840 taaacctagatagaaaa-aaacaagtttgcaagcgacaaactt 29340881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 12778454 - 12778514
Alignment:
Q  178 aagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgagaaaa 239  Q
    |||||||||||||| || ||| || |||||| |||||||||||| | |||||||||||||||    
T  12778454 aagtttgcaagcgataatctt-gtgaaaataaggttctggaatctaccagaaattgagaaaa 12778514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 256
Target Start/End: Complemental strand, 24664320 - 24664221
Alignment:
Q  156 taaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgagaaaactctctaaagtattat 255  Q
    |||| ||| |||||||||||| |||||||||||||| |||   |||||||||| ||||  | |||||| || | ||| |||||||||||| || ||||||    
T  24664320 taaatctatattgaaaataaaaaagtttgcaagcgataaa-aatgtaaaaataaggtttcgaaatccaccaaagattaagaaaactctctgaaatattat 24664222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 126 - 259
Target Start/End: Original strand, 2107858 - 2107988
Alignment:
Q  126 acgcagttggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatc 225  Q
    |||||||||||||| ||||||||| || |||||| ||| |||||||  ||||| |||||||||| |||||||| ||||||||| ||||| | |||||| |    
T  2107858 acgcagttggaagcttaggctagcaagcgttaaatctaaattgaaag-aaacaggtttgcaagcaacaaactt-gtaaaaataaggttccg-aatccacc 2107954  T
Q  226 agaaattgagaaaactctctaaagtattattgaa 259  Q
    ||| ||||||||||||||||||| || |||||||    
T  2107955 agagattgagaaaactctctaaaatactattgaa 2107988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 136 - 271
Target Start/End: Original strand, 2472702 - 2472836
Alignment:
Q  136 aagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgag 235  Q
    |||||||||||||| || | |||||||| |||||||  | |||||||||||| |||||||||| || |||||| ||||| |||||||| |||||||||||    
T  2472702 aagcgtaggctagcaagcgctaaacctaaattgaaag-agacaagtttgcaaccgacaaactt-gtgaaaatagggttccggaatccaccagaaattgag 2472799  T
Q  236 -aaaactctctaaagtattattgaagtaataaaagtt 271  Q
     ||||||| ||||| |||||||||   ||||||||||    
T  2472800 aaaaactcactaaaatattattgattgaataaaagtt 2472836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 134 - 314
Target Start/End: Original strand, 8536380 - 8536564
Alignment:
Q  134 ggaagcgtaggctagcgagggttaaacctagattgaaaataaa----caagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaa 229  Q
    ||||| |||||||||| || | ||||||||||| ||||| |||    |||| ||||||| |||| ||||| | |||||| | ||| |||||||| |||||    
T  8536380 ggaagtgtaggctagcaagtgctaaacctagatagaaaaaaaaaaatcaaggttgcaagggacagacttt-tgaaaataggattccggaatccaccagaa 8536478  T
Q  230 attgagaaaactctctaaagtattattgaagtaataaaagtt-tttattaggctacaaatgttaagttcaaatagagaaataacaa 314  Q
    |||||| |||||||||||| ||||||  ||  ||||||||||   | ||||||||||| ||| ||| | |||||| ||||||||||    
T  8536479 attgaggaaactctctaaaatattatctaatgaataaaagttgcctcttaggctacaactgtcaagcttaaatagggaaataacaa 8536564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 236
Target Start/End: Original strand, 45168353 - 45168434
Alignment:
Q  156 taaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatat--ggttctggaatccatcagaaattgaga 236  Q
    |||||||||||||||| ||||||||||||||||||||||||||   ||||||||  |||||  |||||||  |||||||||||    
T  45168353 taaacctagattgaaa-taaacaagtttgcaagcgacaaacttgtgaaaaatatagggttccagaatccacaagaaattgaga 45168434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 198
Target Start/End: Complemental strand, 33175921 - 33175849
Alignment:
Q  126 acgcagttggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactt 198  Q
    ||||||| |||||||||||||||| |  | |||||||| |||||||| | ||||||||||||  |||||||||    
T  33175921 acgcagtcggaagcgtaggctagcaaacgataaacctatattgaaaagagacaagtttgcaaaggacaaactt 33175849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 294
Target Start/End: Original strand, 365604 - 365764
Alignment:
Q  134 ggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcag-aaatt 232  Q
    |||||||||||||||| |  | |||||||| |  |||||| ||||| ||  |||||||||||| |||| |||||| |||||| ||||||| ||| ||||     
T  365604 ggaagcgtaggctagcaaacgctaaacctaaaaagaaaat-aacaaattcccaagcgacaaac-ttgtgaaaatagggttcttgaatccaccagaaaata 365701  T
Q  233 gagaaaactctctaaagtattattgaagtaataaaagtt-tttattaggctacaaatgttaag 294  Q
    ||||||| ||||  || |||||||||   |||||||||| | | ||||||||||| |||||||    
T  365702 gagaaaagtctcagaaatattattgattgaataaaagttatctcttaggctacaactgttaag 365764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 144 - 314
Target Start/End: Complemental strand, 17707 - 17537
Alignment:
Q  144 gctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgag-aaaactc 242  Q
    |||||| || ||||||||||||||||||  |||||||||||||| |||||||||| || ||||||||||||||||||||| | ||| ||||| ||||||     
T  17707 gctagcaagcgttaaacctagattgaaag-aaacaagtttgcaaacgacaaactt-gtcaaaatatggttctggaatccacctgaatttgagaaaaacta 17610  T
Q  243 tctaaagtattattgaagtaataaaagttt-ttattaggctacaaatgttaagttcaaatagagaaataacaa 314  Q
    |||||| ||||||| ||  ||||||| |||  | ||||| ||||| ||||||| | |||||  ||||||||||    
T  17609 tctaaaatattattcaatgaataaaattttcctcttaggttacaactgttaagcttaaataaggaaataacaa 17537  T

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Target: scaffold0090 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 198 - 314
Target Start/End: Original strand, 15138 - 15254
Alignment:
Q  198 ttgtaaaaatatggttctggaatccatcagaaattgagaaaactctctaaagtattattgaagtaataaaagtttttattaggctacaaatgttaagttc 297  Q
    ||||||||||| |||||| ||||||| |||||||||||||||  ||||||| ||||||||||  |||||| ||| |  ||||||||||| ||||||| |     
T  15138 ttgtaaaaatagggttctagaatccaccagaaattgagaaaatcctctaaaatattattgaatgaataaacgttctccttaggctacaattgttaagctt 15237  T
Q  298 aaatagagaaataacaa 314  Q
    |||||| ||||||||||    
T  15238 aaatagggaaataacaa 15254  T

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Target: scaffold0024 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 156 - 269
Target Start/End: Complemental strand, 145790 - 145677
Alignment:
Q  156 taaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgag-aaaactctctaaagtatta 254  Q
    ||||||||||||||||| || |||||||||||||||||| | ||||||||||| |||||| ||||||| || |||||||| |||| | |||||| |||||    
T  145790 taaacctagattgaaaaaaatcaagtttgcaagcgacaagc-ttgtaaaaatagggttctagaatccaccaaaaattgagaaaaattatctaaaatatta 145692  T
Q  255 ttgaagtaataaaag 269  Q
    |||||  ||||||||    
T  145691 ttgaatgaataaaag 145677  T

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Target: scaffold0024; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 271
Target Start/End: Original strand, 143974 - 144064
Alignment:
Q  177 caagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgagaaaactctctaaagtattattgaagtaataaaagtt 271  Q
    ||||||||||||||| ||| ||||| |||||| | ||| |||||||| ||   ||||||||||||||||||| ||||||||||  ||||||||||    
T  143974 caagtttgcaagcgaaaaa-tttgtgaaaataggtttccggaatccacca---attgagaaaactctctaaaatattattgaataaataaaagtt 144064  T

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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 126 - 259
Target Start/End: Complemental strand, 18252502 - 18252370
Alignment:
Q  126 acgcagttggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatc 225  Q
    ||||||| ||||| |||||||  | || ||||||||||||| ||||   ||||||||||||||||||||||  ||| |||||| ||||||  ||||||      
T  18252502 acgcagtcggaagtgtaggcttacaagcgttaaacctagatagaaatagaacaagtttgcaagcgacaaac-ctgtgaaaatagggttctataatccact 18252404  T
Q  226 agaaattgagaaaactctctaaagtattattgaa 259  Q
    |||||||||||||||||| |||| ||||||||||    
T  18252403 agaaattgagaaaactctttaaaatattattgaa 18252370  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 126 - 258
Target Start/End: Complemental strand, 26140429 - 26140298
Alignment:
Q  126 acgcagttggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatc 225  Q
    ||||||| |||||| |||| |||| |  | |||| |||||||||||  ||||||| |||||||||||||||||  | |||||| |||||  ||||||| |    
T  26140429 acgcagtcggaagcataggttagcaaacgctaaatctagattgaaagaaaacaagattgcaagcgacaaactta-tgaaaatagggttcaagaatccacc 26140331  T
Q  226 agaaattgagaaaactctctaaagtattattga 258  Q
    | ||||||||||||||||||||| |||||||||    
T  26140330 aaaaattgagaaaactctctaaaatattattga 26140298  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 126 - 243
Target Start/End: Original strand, 8456382 - 8456502
Alignment:
Q  126 acgcagttggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatc 225  Q
    ||||||| ||||||||||| |||| || | ||||||||||||||||| ||||||||| ||||||||| ||| ||||||||||| | ||| | |||||| |    
T  8456382 acgcagtcggaagcgtagggtagcaagcgctaaacctagattgaaaagaaacaagttcgcaagcgacgaac-ttgtaaaaataggattccgaaatccacc 8456480  T
Q  226 a----gaaattgagaaaactct 243  Q
    |    |||||||||||||||||    
T  8456481 agatcgaaattgagaaaactct 8456502  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 259
Target Start/End: Original strand, 19497356 - 19497440
Alignment:
Q  175 aacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgag-aaaactctctaaagtattattgaa 259  Q
    |||||||||||||||||||||| |||| |||||| ||||| | ||||||||| |||||||| |||| |||||||| ||||||||||    
T  19497356 aacaagtttgcaagcgacaaac-ttgtgaaaatagggttccgaaatccatcaaaaattgagaaaaaatctctaaaatattattgaa 19497440  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 141 - 271
Target Start/End: Complemental strand, 492638 - 492508
Alignment:
Q  141 taggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgag-aaaa 239  Q
    ||||||||| || | ||||  ||||||||||| ||||||||||||||||||||||| |||| || ||| ||||  |||||| | |||||||| || ||||    
T  492638 taggctagcaagcgctaaatttagattgaaaagaaacaagtttgcaagcgacaaac-ttgtgaagatagggtttcggaatcaaccagaaattaagaaaaa 492540  T
Q  240 ctctctaaagtattattgaagtaataaaagtt 271  Q
    |||||| || ||||||| ||  ||||||||||    
T  492539 ctctctgaaatattattaaatgaataaaagtt 492508  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 259
Target Start/End: Complemental strand, 22440935 - 22440811
Alignment:
Q  134 ggaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattg 233  Q
    |||||||||||||||| || | ||||||||||| |||||  |||| ||| ||||||||||||| || | | |||| |||||  |||||||  |||||||     
T  22440935 ggaagcgtaggctagcaagtgctaaacctagatagaaaa-gaacatgttcgcaagcgacaaac-ttatgataatagggttccagaatccactagaaatta 22440838  T
Q  234 agaaaa-ctctctaaagtattattgaa 259  Q
    |||||| || |||||| ||||||||||    
T  22440837 agaaaacctatctaaaatattattgaa 22440811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 40778820 - 40778875
Alignment:
Q  156 taaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggtt 213  Q
    ||||||||||| ||||| || |||||||||||||||||||| ||||||||||| ||||    
T  40778820 taaacctagatagaaaagaa-caagtttgcaagcgacaaac-ttgtaaaaatagggtt 40778875  T

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Target: scaffold0054 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 198
Target Start/End: Complemental strand, 10732 - 10669
Alignment:
Q  135 gaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactt 198  Q
    ||||||||||||||| ||  |||||||||||||||||| | |||||||||||  ||||||||||    
T  10732 gaagcgtaggctagcaagctttaaacctagattgaaaaaagacaagtttgcattcgacaaactt 10669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 37766 - 37725
Alignment:
Q  156 taaacctagattgaaaataaacaagtttgcaagcgacaaactt 198  Q
    ||||||||||||||||| || ||||||||||||||||||||||    
T  37766 taaacctagattgaaaagaa-caagtttgcaagcgacaaactt 37725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 271
Target Start/End: Complemental strand, 49398 - 49264
Alignment:
Q  135 gaagcgtaggctagcgagggttaaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattga 234  Q
    |||||||| |||||  || ||| |||||||||||| || || ||||||||||||||||||||||  | |||||| |||||   |||||| || ||||       
T  49398 gaagcgtaagctagaaagcgttgaacctagattgagaagaa-caagtttgcaagcgacaaactta-tgaaaatagggttccaaaatccaccataaataag 49301  T
Q  235 gaaaactctctaaagtattattgaagtaataaaagtt 271  Q
    |||||||||||||| ||| ||| ||  ||||||||||    
T  49300 gaaaactctctaaaatataattaaatgaataaaagtt 49264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 14177 - 14238
Alignment:
Q  175 aacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgagaa 237  Q
    ||||||||||||||||| ||| ||||| ||||||  ||| |||||||||||| ||||||||||    
T  14177 aacaagtttgcaagcgataaa-tttgtgaaaatagtgttttggaatccatcaaaaattgagaa 14238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 58667 - 58606
Alignment:
Q  175 aacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgagaa 237  Q
    ||||||||||||||||| ||| ||||| ||||||  ||| |||||||||||| ||||||||||    
T  58667 aacaagtttgcaagcgataaa-tttgtgaaaatagtgttttggaatccatcaaaaattgagaa 58606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 236
Target Start/End: Original strand, 46767 - 46846
Alignment:
Q  156 taaacctagattgaaaataaacaagtttgcaagcgacaaactttgtaaaaatatggttctggaatccatcagaaattgaga 236  Q
    ||||||||||| ||||| || |||||||||||||||||||| |   |||| || ||||| |||||||| || |||||||||    
T  46767 taaacctagatagaaaagaa-caagtttgcaagcgacaaacctatcaaaattaaggttccggaatccaccaaaaattgaga 46846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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