View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14684_low_2 (Length: 612)
Name: NF14684_low_2
Description: NF14684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14684_low_2 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 491; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 15 - 596
Target Start/End: Original strand, 1900619 - 1901213
Alignment:
| Q |
15 |
aaaggagagagggaagggctttagagagtcatctcttatctaggaggactggaggagcttagctctgagcggtaggagtaccggtcttttgtaattttcc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||| ||||||||||| |
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|
| T |
1900619 |
aaaggagagagggaagggctttagagagtcatctcttatctaggaggactggagaagcttagctctgggcggtaggagtactggtcttctgtaattttcc |
1900718 |
T |
|
| Q |
115 |
tttttcgtaaataatagattccatttattaaacgttgttgtgttattttatccattaggttctgggttcctaacaggatatatggtaaatggggattcaa |
214 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
1900719 |
tttttcgtaaataatacattccatttattaagtgttgttgtgttattttctccgtaaggttctgggttcctaacaggatatatggtaaatggggcttcaa |
1900818 |
T |
|
| Q |
215 |
gaatctaccatgcaagatcga-------------atataatccatccattaagatgtacgtatgaatagaatctactcaaatgactctcccttggcaagt |
301 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
1900819 |
gaatctaccatgcaagatcgagcataacgacataatataatccatccattaagatgtacgtatgaatagactctactcaaatgactctcccttggcaagt |
1900918 |
T |
|
| Q |
302 |
ggttaatatggggtatagggaatgaaagaaaaactgtgctacggatgtgggtaatatggggtgccaaagtcccgcgatgagtaatatgtcgatgtgatgc |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1900919 |
ggttaatatggggtatagggaatgaaagaaaaactgtgctacggatgtctgtaatatggggtgccaaagtcccgcgatgagtaatatgtcgatgtgatgc |
1901018 |
T |
|
| Q |
402 |
tcggtgtagcatttaagtggtttggttttttcccaccgataactagcttttaaaggaagattatttcccaagcgctcaaatgcttgtcaaaatgcaacct |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1901019 |
tcggtgtagcatttaagtggtttggttttttcccaccgataactagcttttaaaggaagattatttcccaagcgctcaaatgcttgtcaaaatgcaacct |
1901118 |
T |
|
| Q |
502 |
tgtatttattttttctaccgctttgatttgttgattcaggagattaaaataaaaagtagttttgctagaataactgttacaaaacccaaaaagaa |
596 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1901119 |
tgtatttattttttctaccgctttgatttgttgattcaggagattaaaataaaaagtagttttgctaaaataactgttacaaaacccaaaaagaa |
1901213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 15 - 596
Target Start/End: Original strand, 1910065 - 1910659
Alignment:
| Q |
15 |
aaaggagagagggaagggctttagagagtcatctcttatctaggaggactggaggagcttagctctgagcggtaggagtaccggtcttttgtaattttcc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||| ||||||||||| |
|
|
| T |
1910065 |
aaaggagagagggaagggctttagagagtcatctcttatctaggaggactggagaagcttagctctgggcggtaggagtactggtcttctgtaattttcc |
1910164 |
T |
|
| Q |
115 |
tttttcgtaaataatagattccatttattaaacgttgttgtgttattttatccattaggttctgggttcctaacaggatatatggtaaatggggattcaa |
214 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
1910165 |
tttttcgtaaataatacattccatttattaagtgttgttgtgttattttctccgtaaggttctgggttcctaacaggatatatggtaaatggggcttcaa |
1910264 |
T |
|
| Q |
215 |
gaatctaccatgcaagatcga-------------atataatccatccattaagatgtacgtatgaatagaatctactcaaatgactctcccttggcaagt |
301 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1910265 |
gaatctaccatgcaagatcgagcataacgacataatataatccatccattaagatgtacgtatgaatagactctactcaaatgactctcccttggcaagt |
1910364 |
T |
|
| Q |
302 |
ggttaatatggggtatagggaatgaaagaaaaactgtgctacggatgtgggtaatatggggtgccaaagtcccgcgatgagtaatatgtcgatgtgatgc |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1910365 |
ggttaatatggggtatagggaatgaaagaaaaactgtgctacggatgtctgtaatatggggtgccaaagtcccgcgatgagtaatatgtcgatgtgatgc |
1910464 |
T |
|
| Q |
402 |
tcggtgtagcatttaagtggtttggttttttcccaccgataactagcttttaaaggaagattatttcccaagcgctcaaatgcttgtcaaaatgcaacct |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1910465 |
tcggtgtagcatttaagtggtttggttttttcccaccgataactagcttttaaaggaagattatttcccaagcgctcaaatgcttgtcaaaatgcaacct |
1910564 |
T |
|
| Q |
502 |
tgtatttattttttctaccgctttgatttgttgattcaggagattaaaataaaaagtagttttgctagaataactgttacaaaacccaaaaagaa |
596 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1910565 |
tgtatttattttttctaccgctttgatttgttgattcaggagattaaaataaaaagtagttttgctaaaataactgttacaaaacccaaaaagaa |
1910659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 314 - 577
Target Start/End: Original strand, 1894058 - 1894322
Alignment:
| Q |
314 |
gtatagggaatgaaagaaaaactgtgctacggatgtgggtaatatggggtgccaaagtcccgcgatgagtaatatgtcgatgtgatgctcggtgtagcat |
413 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| || |||||||| ||||||||| ||||||||| ||||| ||||||||||| |||||| || |
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|
| T |
1894058 |
gtatagggaatgaaagaaaaactgtgctatggatgtggttattatggggtaccaaagtcctacgatgagtagtatgttaatgtgatgctcagtgtagtat |
1894157 |
T |
|
| Q |
414 |
ttaagtggtttggtttttt-cccaccgataactagcttttaaaggaagattatttcccaagcgctcaaatgcttgtcaaaatgcaaccttgtatttattt |
512 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
1894158 |
ttaagtggtttggttttttccccactgataactagcttttaaaggaagattatttcccaagcgctcaaatgcatgtcaaaatgcaaccttgtattta-tt |
1894256 |
T |
|
| Q |
513 |
tttctaccgctttgatttgttgattcaggaga-ttaaaataaaaagtagttttgctagaataactg |
577 |
Q |
| |
|
|||||||| ||||||||| || || | || | |||||||||||||||||| ||||| |||||||| |
|
|
| T |
1894257 |
tttctaccaatttgatttgctgcttaatgaaatttaaaataaaaagtagttatgctaaaataactg |
1894322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 314 - 577
Target Start/End: Original strand, 1903504 - 1903768
Alignment:
| Q |
314 |
gtatagggaatgaaagaaaaactgtgctacggatgtgggtaatatggggtgccaaagtcccgcgatgagtaatatgtcgatgtgatgctcggtgtagcat |
413 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| || |||||||| ||||||||| ||||||||| ||||| ||||||||||| |||||| || |
|
|
| T |
1903504 |
gtatagggaatgaaagaaaaactgtgctatggatgtggttattatggggtaccaaagtcctacgatgagtagtatgttaatgtgatgctcagtgtagtat |
1903603 |
T |
|
| Q |
414 |
ttaagtggtttggtttttt-cccaccgataactagcttttaaaggaagattatttcccaagcgctcaaatgcttgtcaaaatgcaaccttgtatttattt |
512 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
1903604 |
ttaagtggtttggttttttccccactgataactagcttttaaaggaagattatttcccaagcgctcaaatgcatgtcaaaatgcaaccttgtattta-tt |
1903702 |
T |
|
| Q |
513 |
tttctaccgctttgatttgttgattcaggaga-ttaaaataaaaagtagttttgctagaataactg |
577 |
Q |
| |
|
|||||||| ||||||||| || || | || | |||||||||||||||||| ||||| |||||||| |
|
|
| T |
1903703 |
tttctaccaatttgatttgctgcttaatgaaatttaaaataaaaagtagttatgctaaaataactg |
1903768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 68 - 301
Target Start/End: Original strand, 1893770 - 1894016
Alignment:
| Q |
68 |
ggagcttagctctgagcggtaggagtaccggtcttttgtaattttcctttttcgtaaataatagattccatttattaaacgttgttgtgttattttatcc |
167 |
Q |
| |
|
||||||| |||||| || |||||||||||| || |||||||||||||||||||||| ||| |||||||||||||| |||| ||||||||||| ||| |
|
|
| T |
1893770 |
ggagctttgctctgggcagtaggagtaccgttcaacggtaattttcctttttcgtaaatgatacattccatttattaagtgttgctgtgttattttctcc |
1893869 |
T |
|
| Q |
168 |
attaggttctgggttcctaacaggatatatggtaaatggggattcaagaatctaccatgcaagatcg-------------aatataatccatccattaag |
254 |
Q |
| |
|
||||||||||||| ||| ||||| ||||| |||||||||| || |||||||||||| ||||| | |||| ||||||||||||||| |
|
|
| T |
1893870 |
gttaggttctgggtccctgacaggctatattgtaaatggggcatcgtgaatctaccatgaaagatagagcataacgacgtaatagaatccatccattaag |
1893969 |
T |
|
| Q |
255 |
atgtacgtatgaatagaatctactcaaatgactctcccttggcaagt |
301 |
Q |
| |
|
| ||| || ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1893970 |
ttatacatacgaatagactctactcaaatgactctcccttggcaagt |
1894016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 68 - 301
Target Start/End: Original strand, 1903216 - 1903462
Alignment:
| Q |
68 |
ggagcttagctctgagcggtaggagtaccggtcttttgtaattttcctttttcgtaaataatagattccatttattaaacgttgttgtgttattttatcc |
167 |
Q |
| |
|
||||||| |||||| || |||||||||||| || |||||||||||||||||||||| ||| |||||||||||||| |||| ||||||||||| ||| |
|
|
| T |
1903216 |
ggagctttgctctgggcagtaggagtaccgttcaacggtaattttcctttttcgtaaatgatacattccatttattaagtgttgctgtgttattttctcc |
1903315 |
T |
|
| Q |
168 |
attaggttctgggttcctaacaggatatatggtaaatggggattcaagaatctaccatgcaagatcg-------------aatataatccatccattaag |
254 |
Q |
| |
|
||||||||||||| ||| ||||| ||||| |||||||||| || |||||||||||| ||||| | |||| ||||||||||||||| |
|
|
| T |
1903316 |
gttaggttctgggtccctgacaggctatattgtaaatggggcatcgtgaatctaccatgaaagatagagcataacgacgtaatagaatccatccattaag |
1903415 |
T |
|
| Q |
255 |
atgtacgtatgaatagaatctactcaaatgactctcccttggcaagt |
301 |
Q |
| |
|
| ||| || ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1903416 |
ttatacatacgaatagactctactcaaatgactctcccttggcaagt |
1903462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 66 - 232
Target Start/End: Complemental strand, 2934605 - 2934446
Alignment:
| Q |
66 |
gaggagcttagctctgagcggtaggagtaccggtcttttgtaattttcctttttcgtaaataatagattccatttattaaacgttgttgtgttattttat |
165 |
Q |
| |
|
||||||||| ||||| || |||||||||||| || |||||||||||||||| ||||||||| ||||||||| |||| ||||||||||| | |
|
|
| T |
2934605 |
gaggagctttcctctgggcagtaggagtaccgttcaacggtaattttcctttttcataaataatacattccattt-------gttgctgtgttattttct |
2934513 |
T |
|
| Q |
166 |
ccattaggttctgggttcctaacaggatatatggtaaatggggattcaagaatctaccatgcaagat |
232 |
Q |
| |
|
|| ||||||||| ||| ||||||||| || || |||||||||| ||| |||||||||||||||||| |
|
|
| T |
2934512 |
ccgttaggttctaggtccctaacaggctacattgtaaatggggcatcatgaatctaccatgcaagat |
2934446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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